Wall clock time and date at job start Wed Apr 1 2020 03:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31815 * 119.12235 * 2 1 4 4 C 1.32320 * 120.81292 * 180.02562 * 3 2 1 5 5 C 1.38612 * 119.10883 * 0.02562 * 4 3 2 6 6 C 1.38573 * 118.40018 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.45209 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47619 * 124.99766 * 7 6 5 9 9 C 1.50701 * 109.47292 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00071 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99681 * 180.02562 * 9 8 7 12 12 C 1.46600 * 119.68717 * 359.97438 * 11 9 8 13 13 C 1.53959 * 110.57605 * 227.82257 * 12 11 9 14 14 C 1.51514 * 107.34644 * 308.94705 * 13 12 11 15 15 H 1.09000 * 109.28047 * 306.97739 * 14 13 12 16 16 C 1.55363 * 107.79197 * 64.86105 * 14 13 12 17 17 H 1.08999 * 111.50884 * 50.39778 * 16 14 13 18 18 C 1.53747 * 100.22090 * 169.08044 * 16 14 13 19 19 C 1.55287 * 101.84046 * 320.90799 * 18 16 14 20 20 N 1.45461 * 117.34645 * 181.91156 * 14 13 12 21 21 C 1.36934 * 126.40890 * 30.62649 * 20 14 13 22 22 H 1.08004 * 119.99829 * 359.97438 * 21 20 14 23 23 C 1.38810 * 120.00139 * 179.97438 * 21 20 14 24 24 N 1.31619 * 120.00263 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99740 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47116 * 60.00413 * 25 23 21 27 27 H 1.48505 * 109.46865 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47216 * 299.99933 * 25 23 21 29 29 C 1.47720 * 119.68162 * 180.02562 * 11 9 8 30 30 N 1.31781 * 119.12373 * 180.29779 * 2 1 3 31 31 H 1.09001 * 109.46999 * 89.99697 * 1 2 3 32 32 H 1.08999 * 109.46882 * 210.00015 * 1 2 3 33 33 H 1.08998 * 109.46921 * 329.99977 * 1 2 3 34 34 H 1.08011 * 120.44253 * 180.02562 * 4 3 2 35 35 H 1.08003 * 120.80173 * 179.97438 * 5 4 3 36 36 H 1.09005 * 109.46917 * 4.99303 * 7 6 5 37 37 H 1.09002 * 109.47466 * 244.99531 * 7 6 5 38 38 H 1.08997 * 109.47208 * 59.99503 * 8 7 6 39 39 H 1.09009 * 109.46848 * 300.00195 * 8 7 6 40 40 H 1.08995 * 109.25533 * 107.53997 * 12 11 9 41 41 H 1.08999 * 109.24984 * 348.10486 * 12 11 9 42 42 H 1.08998 * 109.87643 * 189.48334 * 13 12 11 43 43 H 1.08999 * 109.88083 * 68.41108 * 13 12 11 44 44 H 1.09002 * 110.95368 * 202.76899 * 18 16 14 45 45 H 1.09000 * 110.95241 * 79.04207 * 18 16 14 46 46 H 1.08998 * 109.92217 * 263.13697 * 19 18 16 47 47 H 1.08999 * 109.92048 * 141.83114 * 19 18 16 48 48 H 0.96994 * 119.99884 * 180.02562 * 24 23 21 49 49 H 1.08997 * 110.07083 * 247.15835 * 29 11 9 50 50 H 1.09003 * 110.06606 * 8.62140 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1906 -0.0005 5 6 4.1809 -0.0001 -0.0016 6 6 3.4713 -1.1904 -0.0015 7 6 4.1961 -2.5116 -0.0021 8 6 3.7166 -3.3570 1.1795 9 6 4.4419 -4.6779 1.1792 10 8 5.2613 -4.9197 0.3184 11 7 4.1791 -5.5911 2.1351 12 6 3.1869 -5.2919 3.1720 13 6 3.7442 -5.6282 4.5672 14 6 4.2805 -7.0441 4.5102 15 1 3.5054 -7.7074 4.1264 16 6 5.4795 -7.0581 3.5222 17 1 6.1950 -6.2682 3.7509 18 6 6.0533 -8.4553 3.8093 19 6 5.8909 -8.5559 5.3504 20 7 4.8253 -7.6022 5.7380 21 6 4.4278 -7.3023 7.0136 22 1 3.6357 -6.5868 7.1782 23 6 5.0427 -7.9180 8.0951 24 7 6.0083 -8.7896 7.8946 25 14 4.5008 -7.5083 9.8352 26 1 3.0641 -7.8469 9.9989 27 1 5.3083 -8.2936 10.8030 28 1 4.6995 -6.0584 10.0872 29 6 4.8946 -6.8835 2.1285 30 7 2.1484 -1.1512 -0.0060 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 3.9907 2.1375 -0.0001 35 1 5.2609 -0.0001 -0.0024 36 1 5.2685 -2.3377 0.0869 37 1 3.9896 -3.0389 -0.9335 38 1 2.6442 -3.5307 1.0905 39 1 3.9230 -2.8296 2.1110 40 1 2.2890 -5.8828 2.9915 41 1 2.9335 -4.2325 3.1318 42 1 2.9488 -5.5627 5.3096 43 1 4.5478 -4.9373 4.8218 44 1 7.1036 -8.5116 3.5234 45 1 5.4715 -9.2267 3.3049 46 1 6.8264 -8.2867 5.8408 47 1 5.6012 -9.5694 5.6279 48 1 6.4377 -9.2201 8.6503 49 1 4.1998 -7.6945 1.9106 50 1 5.6924 -6.8655 1.3860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036778701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:37 Heat of formation + Delta-G solvation = 15.978171 kcal Electronic energy + Delta-G solvation = -29983.604840 eV Core-core repulsion = 26010.481066 eV Total energy + Delta-G solvation = -3973.123774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.08131 -41.46070 -39.76310 -36.82857 -36.11650 -34.56126 -34.33482 -33.05274 -32.64414 -31.24823 -29.78396 -29.35914 -27.09978 -26.56848 -24.83063 -23.94027 -23.73452 -22.68783 -21.85973 -21.17284 -19.95494 -18.70949 -18.56063 -17.97007 -17.05254 -16.93857 -16.76859 -16.74675 -16.13264 -16.06802 -15.94407 -15.69080 -15.17390 -15.06169 -14.53845 -14.43804 -14.15551 -14.00169 -13.80417 -13.66265 -13.52085 -13.32138 -13.19483 -13.14097 -13.07845 -12.88701 -12.64544 -12.47698 -12.28853 -12.11497 -12.02686 -11.79665 -11.76008 -11.60476 -11.54066 -11.47311 -11.00014 -10.77263 -10.69098 -10.31791 -10.20150 -9.67709 -8.86708 -7.82582 -5.17026 -0.06113 0.10062 1.46192 1.48996 1.54954 1.61894 1.97217 2.51158 2.74910 2.93691 3.16782 3.36035 3.37526 3.48805 3.70855 3.84862 3.85536 3.99408 4.06587 4.09217 4.14981 4.20813 4.24422 4.25662 4.41506 4.50280 4.51727 4.57474 4.64303 4.67345 4.73406 4.73884 4.82398 4.85317 4.86047 4.92453 4.98065 5.06448 5.09102 5.10668 5.10946 5.22834 5.46705 5.51824 5.54813 5.56688 5.66840 5.77262 6.08048 6.21506 6.40748 7.10036 7.13824 7.15052 7.80600 8.49514 9.29213 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.002301 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.625578 B =12164.431711 C =13341.983726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.301 3.699 3 N -0.546 5.546 4 C 0.148 3.852 5 C -0.230 4.230 6 C 0.170 3.830 7 C -0.049 4.049 8 C -0.122 4.122 9 C 0.514 3.486 10 O -0.581 6.581 11 N -0.610 5.610 12 C 0.119 3.881 13 C -0.123 4.123 14 C 0.156 3.844 15 H 0.022 0.978 16 C -0.109 4.109 17 H 0.062 0.938 18 C -0.122 4.122 19 C 0.182 3.818 20 N -0.616 5.616 21 C -0.229 4.229 22 H 0.088 0.912 23 C -0.071 4.071 24 N -0.955 5.955 25 Si 0.974 3.026 26 H -0.276 1.276 27 H -0.299 1.299 28 H -0.277 1.277 29 C 0.134 3.866 30 N -0.533 5.533 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.199 0.801 35 H 0.173 0.827 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.016 0.984 47 H 0.004 0.996 48 H 0.244 0.756 49 H 0.081 0.919 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.844 17.682 -18.053 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.035 3.965 3 N -0.262 5.262 4 C -0.017 4.017 5 C -0.251 4.251 6 C 0.025 3.975 7 C -0.087 4.087 8 C -0.162 4.162 9 C 0.304 3.696 10 O -0.461 6.461 11 N -0.342 5.342 12 C -0.004 4.004 13 C -0.163 4.163 14 C 0.049 3.951 15 H 0.039 0.961 16 C -0.129 4.129 17 H 0.080 0.920 18 C -0.160 4.160 19 C 0.057 3.943 20 N -0.340 5.340 21 C -0.358 4.358 22 H 0.106 0.894 23 C -0.264 4.264 24 N -0.604 5.604 25 Si 0.803 3.197 26 H -0.202 1.202 27 H -0.226 1.226 28 H -0.203 1.203 29 C 0.012 3.988 30 N -0.249 5.249 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.216 0.784 35 H 0.191 0.809 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.132 0.868 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.128 0.872 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.035 0.965 47 H 0.022 0.978 48 H 0.054 0.946 49 H 0.099 0.901 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.398 17.489 -18.273 26.651 hybrid contribution 1.180 -0.383 1.493 1.941 sum -7.219 17.105 -16.780 25.025 Atomic orbital electron populations 1.20649 0.84142 1.04819 1.04599 1.23794 0.99412 0.83298 0.90043 1.68330 1.11336 1.30691 1.15819 1.23819 0.89261 1.00081 0.88586 1.23081 1.04366 0.93457 1.04205 1.21863 0.89644 0.96421 0.89615 1.20279 0.99587 0.89597 0.99243 1.21558 1.02295 0.91682 1.00651 1.21084 0.82025 0.86224 0.80309 1.90661 1.36615 1.80064 1.38798 1.48384 1.41366 1.16532 1.27877 1.21853 0.90292 1.03208 0.85028 1.21812 1.00960 0.96373 0.97116 1.20883 0.93979 0.93843 0.86370 0.96101 1.22452 0.97779 0.97309 0.95379 0.91963 1.22575 1.01280 0.96305 0.95868 1.21303 0.90902 0.91552 0.90581 1.44490 1.40698 1.47681 1.01147 1.19375 1.14630 1.19529 0.82308 0.89426 1.25633 0.99249 0.99753 1.01740 1.70160 1.28204 1.32350 1.29727 0.85207 0.77425 0.77449 0.79611 1.20224 1.22571 1.20270 1.21436 0.96610 0.84827 0.95957 1.68089 1.10123 1.30990 1.15725 0.88770 0.89002 0.88971 0.78409 0.80948 0.88431 0.89439 0.86775 0.87660 0.89859 0.87172 0.90639 0.92708 0.90483 0.90362 0.96549 0.97819 0.94631 0.90108 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.32 71.24 0.74 -0.28 16 2 C 0.30 5.53 7.64 138.75 1.06 6.59 16 3 N -0.55 -9.95 10.34 -187.83 -1.94 -11.89 16 4 C 0.15 1.98 11.30 84.71 0.96 2.94 16 5 C -0.23 -3.04 9.80 22.44 0.22 -2.82 16 6 C 0.17 2.92 6.20 42.56 0.26 3.18 16 7 C -0.05 -0.83 4.94 29.85 0.15 -0.68 16 8 C -0.12 -2.14 3.90 29.85 0.12 -2.02 16 9 C 0.51 12.67 7.67 87.66 0.67 13.34 16 10 O -0.58 -18.05 15.34 -3.03 -0.05 -18.09 16 11 N -0.61 -15.28 3.00 -818.16 -2.46 -17.74 16 12 C 0.12 2.60 6.21 86.68 0.54 3.14 16 13 C -0.12 -3.80 5.48 30.43 0.17 -3.63 16 14 C 0.16 5.94 2.58 45.51 0.12 6.06 16 15 H 0.02 0.82 7.90 -2.39 -0.02 0.80 16 16 C -0.11 -3.70 2.86 -10.01 -0.03 -3.73 16 17 H 0.06 2.33 8.11 -2.39 -0.02 2.31 16 18 C -0.12 -4.42 6.54 31.63 0.21 -4.21 16 19 C 0.18 8.98 5.45 86.84 0.47 9.45 16 20 N -0.62 -30.72 3.35 -669.93 -2.24 -32.96 16 21 C -0.23 -12.44 9.88 84.03 0.83 -11.61 16 22 H 0.09 4.44 7.21 -2.91 -0.02 4.42 16 23 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 24 N -0.95 -57.72 10.44 21.65 0.23 -57.50 16 25 Si 0.97 45.35 29.55 68.60 2.03 47.37 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 27 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 28 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 29 C 0.13 3.74 5.95 85.87 0.51 4.25 16 30 N -0.53 -10.34 9.94 -176.03 -1.75 -12.10 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.20 1.21 8.06 -2.90 -0.02 1.18 16 35 H 0.17 1.32 8.01 -2.91 -0.02 1.30 16 36 H 0.10 1.55 7.90 -2.38 -0.02 1.53 16 37 H 0.09 1.66 8.10 -2.39 -0.02 1.64 16 38 H 0.11 1.83 7.83 -2.39 -0.02 1.81 16 39 H 0.11 1.62 7.55 -2.38 -0.02 1.60 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.11 1.79 5.83 -2.39 -0.01 1.78 16 42 H 0.08 2.34 7.62 -2.39 -0.02 2.33 16 43 H 0.05 1.82 8.11 -2.39 -0.02 1.80 16 44 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.08 2.55 8.11 -2.39 -0.02 2.53 16 46 H 0.02 0.91 7.21 -2.39 -0.02 0.90 16 47 H 0.00 0.20 7.77 -2.39 -0.02 0.18 16 48 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 49 H 0.08 2.08 8.06 -2.39 -0.02 2.06 16 50 H 0.09 2.54 6.99 -2.39 -0.02 2.52 16 Total: -1.00 -74.05 394.91 2.20 -71.85 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.93 Total: 14.63 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 7.45 Total: 16.41 kcal Atomic # 7 Polarization: -124.01 SS G_CDS: -8.17 Total: -132.18 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.05 Total: -18.09 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -74.05 2.20 -71.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036778701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.831 kcal (2) G-P(sol) polarization free energy of solvation -74.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds