Wall clock time and date at job start Wed Apr 1 2020 03:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31806 * 119.12472 * 2 1 4 4 C 1.32318 * 120.81865 * 180.02562 * 3 2 1 5 5 C 1.38624 * 119.10205 * 0.02562 * 4 3 2 6 6 C 1.38578 * 118.39971 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.44586 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47055 * 124.99629 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99507 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00020 * 180.02562 * 9 8 7 12 12 C 1.47141 * 121.01573 * 359.97438 * 11 9 8 13 13 C 1.53052 * 107.68564 * 122.55699 * 12 11 9 14 14 C 1.51145 * 111.10725 * 54.40059 * 13 12 11 15 15 H 1.09003 * 108.45456 * 185.38587 * 14 13 12 16 16 C 1.53989 * 113.17763 * 304.88429 * 14 13 12 17 17 H 1.08997 * 112.71340 * 284.03454 * 16 14 13 18 18 C 1.56014 * 100.38936 * 163.66340 * 16 14 13 19 19 C 1.54498 * 102.62022 * 323.14413 * 18 16 14 20 20 N 1.46469 * 113.22880 * 65.11011 * 14 13 12 21 21 C 1.36931 * 126.06032 * 29.47513 * 20 14 13 22 22 H 1.07999 * 120.00019 * 359.97438 * 21 20 14 23 23 C 1.38815 * 120.00361 * 180.02562 * 21 20 14 24 24 N 1.31622 * 119.99803 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99977 * 179.97438 * 23 21 20 26 26 H 1.48491 * 109.47468 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47025 * 120.00054 * 25 23 21 28 28 H 1.48505 * 109.46830 * 239.99150 * 25 23 21 29 29 C 1.46525 * 121.01065 * 179.72412 * 11 9 8 30 30 N 1.31784 * 119.11978 * 180.29616 * 2 1 3 31 31 H 1.09003 * 109.46869 * 89.99926 * 1 2 3 32 32 H 1.08995 * 109.46909 * 209.99938 * 1 2 3 33 33 H 1.09001 * 109.46565 * 330.00260 * 1 2 3 34 34 H 1.08005 * 120.44992 * 180.02562 * 4 3 2 35 35 H 1.08004 * 120.79656 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47328 * 4.99899 * 7 6 5 37 37 H 1.09004 * 109.47043 * 244.99709 * 7 6 5 38 38 H 1.09001 * 109.46832 * 59.99966 * 8 7 6 39 39 H 1.09000 * 109.47611 * 300.00263 * 8 7 6 40 40 H 1.09000 * 109.82110 * 242.10774 * 12 11 9 41 41 H 1.09008 * 109.81507 * 3.01618 * 12 11 9 42 42 H 1.08998 * 109.15058 * 174.82389 * 13 12 11 43 43 H 1.08999 * 109.14765 * 294.04237 * 13 12 11 44 44 H 1.08993 * 110.77895 * 204.86268 * 18 16 14 45 45 H 1.09001 * 110.94038 * 81.50177 * 18 16 14 46 46 H 1.09001 * 109.90591 * 263.44210 * 19 18 16 47 47 H 1.09006 * 110.04851 * 142.29639 * 19 18 16 48 48 H 0.96996 * 120.00043 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.34995 * 355.83073 * 29 11 9 50 50 H 1.09004 * 109.34705 * 115.38164 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1486 1.1514 0.0000 4 6 3.4712 1.1905 -0.0005 5 6 4.1809 -0.0003 -0.0016 6 6 3.4712 -1.1905 -0.0026 7 6 4.1961 -2.5117 -0.0032 8 6 3.7156 -3.3575 1.1777 9 6 4.4400 -4.6791 1.1767 10 8 5.2601 -4.9203 0.3165 11 7 4.1764 -5.5927 2.1318 12 6 3.1862 -5.3231 3.1863 13 6 2.1289 -6.4280 3.1247 14 6 2.7654 -7.7961 3.2117 15 1 1.9892 -8.5477 3.0676 16 6 3.8490 -8.0295 2.1427 17 1 3.4309 -8.2222 1.1548 18 6 4.5771 -9.2702 2.7464 19 6 4.5364 -8.9805 4.2634 20 7 3.4182 -8.0487 4.4983 21 6 3.0547 -7.5139 5.7053 22 1 2.2152 -6.8371 5.7653 23 6 3.7659 -7.8407 6.8518 24 7 4.7894 -8.6651 6.7787 25 14 3.2704 -7.1105 8.4982 26 1 2.0969 -6.2200 8.3117 27 1 2.9180 -8.2043 9.4388 28 1 4.4031 -6.3265 9.0529 29 6 4.8632 -6.8869 2.1486 30 7 2.1484 -1.1513 -0.0060 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3632 0.8900 0.5138 34 1 3.9908 2.1374 -0.0001 35 1 5.2609 -0.0003 -0.0024 36 1 5.2684 -2.3380 0.0868 37 1 3.9903 -3.0386 -0.9351 38 1 2.6433 -3.5313 1.0876 39 1 3.9212 -2.8307 2.1095 40 1 3.6732 -5.3316 4.1615 41 1 2.7181 -4.3538 3.0146 42 1 1.4331 -6.3038 3.9545 43 1 1.5824 -6.3479 2.1849 44 1 5.6060 -9.3257 2.3909 45 1 4.0391 -10.1891 2.5136 46 1 5.4737 -8.5224 4.5791 47 1 4.3711 -9.9053 4.8162 48 1 5.2861 -8.8937 7.5798 49 1 5.5017 -6.9684 1.2689 50 1 5.4779 -6.9579 3.0460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036778702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:42 Heat of formation + Delta-G solvation = 34.100783 kcal Electronic energy + Delta-G solvation = -30570.981338 eV Core-core repulsion = 26598.643419 eV Total energy + Delta-G solvation = -3972.337918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.36552 -40.11916 -38.33193 -35.34068 -34.97264 -33.67583 -32.87033 -31.71138 -31.59492 -29.35261 -28.80046 -27.75002 -26.24367 -24.97043 -23.90368 -23.17905 -22.53650 -21.88298 -20.06953 -19.46481 -18.18328 -17.81569 -17.19293 -16.43070 -16.15324 -15.84561 -15.55030 -15.44575 -15.33477 -15.01951 -14.47399 -14.04317 -13.89228 -13.78874 -13.46302 -13.17470 -13.03968 -12.82293 -12.62396 -12.59776 -12.54285 -12.13062 -12.03116 -11.53734 -11.50182 -11.36317 -11.12144 -11.10365 -11.02533 -10.81265 -10.73670 -10.66022 -10.16193 -10.03105 -9.92665 -9.68213 -9.65582 -9.62162 -9.50182 -9.42742 -8.63593 -8.18318 -6.84655 -5.75158 -3.07802 0.62565 0.79381 2.85297 3.26179 3.35721 3.41145 3.44083 3.47397 3.62783 3.81478 4.17220 4.45217 4.59851 4.76542 4.85132 4.91407 4.98351 5.10800 5.16735 5.17619 5.25994 5.26911 5.34628 5.45541 5.52060 5.56337 5.57747 5.61264 5.63737 5.76519 5.81901 5.89010 5.89473 6.03618 6.12729 6.16979 6.27694 6.30452 6.35037 6.43224 6.54713 6.70056 6.76485 6.76886 6.89029 6.94668 7.53868 7.59189 7.77782 7.79551 7.84978 8.21563 8.41398 9.17392 9.79700 10.47518 11.36980 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.002704 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.928143 B =10353.332489 C =11422.742294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.319 3.681 3 N -0.528 5.528 4 C 0.152 3.848 5 C -0.233 4.233 6 C 0.186 3.814 7 C -0.055 4.055 8 C -0.130 4.130 9 C 0.514 3.486 10 O -0.558 6.558 11 N -0.598 5.598 12 C 0.112 3.888 13 C -0.128 4.128 14 C 0.170 3.830 15 H 0.017 0.983 16 C -0.116 4.116 17 H 0.076 0.924 18 C -0.142 4.142 19 C 0.176 3.824 20 N -0.594 5.594 21 C -0.224 4.224 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.919 5.919 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 C 0.126 3.874 30 N -0.515 5.515 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.168 0.832 35 H 0.148 0.852 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.046 0.954 47 H 0.042 0.958 48 H 0.251 0.749 49 H 0.078 0.922 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.641 14.757 -13.710 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 N -0.243 5.243 4 C -0.014 4.014 5 C -0.255 4.255 6 C 0.040 3.960 7 C -0.094 4.094 8 C -0.170 4.170 9 C 0.302 3.698 10 O -0.438 6.438 11 N -0.330 5.330 12 C -0.010 4.010 13 C -0.167 4.167 14 C 0.063 3.937 15 H 0.034 0.966 16 C -0.137 4.137 17 H 0.095 0.905 18 C -0.181 4.181 19 C 0.051 3.949 20 N -0.319 5.319 21 C -0.352 4.352 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.738 3.262 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.219 1.219 29 C 0.004 3.996 30 N -0.231 5.231 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.185 0.815 35 H 0.166 0.834 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.097 0.903 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.133 14.614 -13.906 20.592 hybrid contribution 0.739 0.302 1.100 1.359 sum -3.394 14.916 -12.807 19.950 Atomic orbital electron populations 1.20580 0.85677 1.04306 1.03866 1.23298 0.98230 0.83332 0.89947 1.68259 1.10204 1.30564 1.15244 1.23229 0.89698 0.98634 0.89813 1.22804 1.03091 0.94140 1.05453 1.21796 0.89574 0.95958 0.88672 1.20370 0.99240 0.89627 1.00114 1.21545 1.02333 0.93603 0.99529 1.20452 0.82735 0.85698 0.80889 1.90652 1.35679 1.79666 1.37755 1.48076 1.41212 1.16260 1.27426 1.21807 0.89776 0.97661 0.91753 1.21586 0.97861 0.96053 1.01247 1.20242 0.93015 0.93595 0.86888 0.96560 1.22663 0.97283 0.95486 0.98227 0.90547 1.23132 0.99197 0.96341 0.99452 1.21244 0.91673 0.93904 0.88034 1.44325 1.33590 1.52514 1.01514 1.18994 1.11095 1.21882 0.83201 0.90302 1.24775 0.98038 0.99827 0.97728 1.69964 1.21429 1.37982 1.27306 0.86126 0.77528 0.78263 0.84332 1.20530 1.21844 1.21886 1.21433 0.94425 0.80855 1.02854 1.68102 1.09590 1.30504 1.14859 0.89661 0.89408 0.89654 0.81486 0.83386 0.88940 0.88481 0.87828 0.89161 0.89193 0.90957 0.90613 0.92680 0.92040 0.92360 0.93537 0.93958 0.93843 0.90327 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 10.32 36.01 0.37 -0.28 16 2 C 0.32 3.42 7.64 -157.19 -1.20 2.22 16 3 N -0.53 -5.60 10.33 -10.72 -0.11 -5.71 16 4 C 0.15 1.29 11.31 -17.20 -0.19 1.10 16 5 C -0.23 -1.99 9.80 -39.31 -0.39 -2.38 16 6 C 0.19 1.96 6.20 -82.25 -0.51 1.44 16 7 C -0.06 -0.59 4.94 -27.89 -0.14 -0.72 16 8 C -0.13 -1.52 3.93 -27.88 -0.11 -1.63 16 9 C 0.51 7.89 7.71 -10.98 -0.08 7.81 16 10 O -0.56 -10.03 15.41 5.56 0.09 -9.95 16 11 N -0.60 -9.71 2.94 -173.25 -0.51 -10.22 16 12 C 0.11 1.76 6.27 -3.67 -0.02 1.74 16 13 C -0.13 -2.11 5.19 -27.64 -0.14 -2.26 16 14 C 0.17 3.28 2.85 -68.37 -0.19 3.08 16 15 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 16 C -0.12 -2.02 3.84 -88.60 -0.34 -2.36 16 17 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 18 C -0.14 -2.58 6.28 -24.33 -0.15 -2.74 16 19 C 0.18 4.05 4.64 -2.75 -0.01 4.04 16 20 N -0.59 -13.83 3.12 -164.49 -0.51 -14.34 16 21 C -0.22 -5.69 9.02 -15.06 -0.14 -5.82 16 22 H 0.08 1.93 6.69 -52.49 -0.35 1.57 16 23 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 24 N -0.92 -25.96 10.38 55.49 0.58 -25.38 16 25 Si 0.91 21.23 29.55 -169.99 -5.02 16.20 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 C 0.13 2.23 5.44 -4.14 -0.02 2.20 16 30 N -0.52 -5.94 9.94 -6.99 -0.07 -6.01 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.17 0.85 8.06 -52.48 -0.42 0.42 16 35 H 0.15 0.89 8.01 -52.48 -0.42 0.47 16 36 H 0.09 0.92 7.90 -51.93 -0.41 0.51 16 37 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 38 H 0.10 1.19 7.62 -51.93 -0.40 0.80 16 39 H 0.09 0.99 7.90 -51.93 -0.41 0.58 16 40 H 0.09 1.67 7.48 -51.93 -0.39 1.28 16 41 H 0.07 0.92 5.99 -51.92 -0.31 0.61 16 42 H 0.08 1.29 7.01 -51.93 -0.36 0.92 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 1.02 7.97 -51.93 -0.41 0.61 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 1.19 6.99 -51.93 -0.36 0.83 16 47 H 0.04 1.10 7.56 -51.93 -0.39 0.70 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 50 H 0.08 1.55 6.79 -51.93 -0.35 1.19 16 LS Contribution 390.23 15.07 5.88 5.88 Total: -1.00 -31.50 390.23 -10.93 -42.43 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.87 Total: 1.94 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -3.37 Total: 5.16 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.63 Total: -61.67 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.50 -10.93 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036778702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.530 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds