Wall clock time and date at job start Wed Apr 1 2020 03:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31806 * 119.12472 * 2 1 4 4 C 1.32318 * 120.81865 * 180.02562 * 3 2 1 5 5 C 1.38624 * 119.10205 * 0.02562 * 4 3 2 6 6 C 1.38578 * 118.39971 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.44586 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47055 * 124.99629 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99507 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00020 * 180.02562 * 9 8 7 12 12 C 1.47141 * 121.01573 * 359.97438 * 11 9 8 13 13 C 1.53052 * 107.68564 * 122.55699 * 12 11 9 14 14 C 1.51145 * 111.10725 * 54.40059 * 13 12 11 15 15 H 1.09003 * 108.45456 * 185.38587 * 14 13 12 16 16 C 1.53989 * 113.17763 * 304.88429 * 14 13 12 17 17 H 1.08997 * 112.71340 * 284.03454 * 16 14 13 18 18 C 1.56014 * 100.38936 * 163.66340 * 16 14 13 19 19 C 1.54498 * 102.62022 * 323.14413 * 18 16 14 20 20 N 1.46469 * 113.22880 * 65.11011 * 14 13 12 21 21 C 1.36931 * 126.06032 * 29.47513 * 20 14 13 22 22 H 1.07999 * 120.00019 * 359.97438 * 21 20 14 23 23 C 1.38815 * 120.00361 * 180.02562 * 21 20 14 24 24 N 1.31622 * 119.99803 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99977 * 179.97438 * 23 21 20 26 26 H 1.48491 * 109.47468 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47025 * 120.00054 * 25 23 21 28 28 H 1.48505 * 109.46830 * 239.99150 * 25 23 21 29 29 C 1.46525 * 121.01065 * 179.72412 * 11 9 8 30 30 N 1.31784 * 119.11978 * 180.29616 * 2 1 3 31 31 H 1.09003 * 109.46869 * 89.99926 * 1 2 3 32 32 H 1.08995 * 109.46909 * 209.99938 * 1 2 3 33 33 H 1.09001 * 109.46565 * 330.00260 * 1 2 3 34 34 H 1.08005 * 120.44992 * 180.02562 * 4 3 2 35 35 H 1.08004 * 120.79656 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47328 * 4.99899 * 7 6 5 37 37 H 1.09004 * 109.47043 * 244.99709 * 7 6 5 38 38 H 1.09001 * 109.46832 * 59.99966 * 8 7 6 39 39 H 1.09000 * 109.47611 * 300.00263 * 8 7 6 40 40 H 1.09000 * 109.82110 * 242.10774 * 12 11 9 41 41 H 1.09008 * 109.81507 * 3.01618 * 12 11 9 42 42 H 1.08998 * 109.15058 * 174.82389 * 13 12 11 43 43 H 1.08999 * 109.14765 * 294.04237 * 13 12 11 44 44 H 1.08993 * 110.77895 * 204.86268 * 18 16 14 45 45 H 1.09001 * 110.94038 * 81.50177 * 18 16 14 46 46 H 1.09001 * 109.90591 * 263.44210 * 19 18 16 47 47 H 1.09006 * 110.04851 * 142.29639 * 19 18 16 48 48 H 0.96996 * 120.00043 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.34995 * 355.83073 * 29 11 9 50 50 H 1.09004 * 109.34705 * 115.38164 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1486 1.1514 0.0000 4 6 3.4712 1.1905 -0.0005 5 6 4.1809 -0.0003 -0.0016 6 6 3.4712 -1.1905 -0.0026 7 6 4.1961 -2.5117 -0.0032 8 6 3.7156 -3.3575 1.1777 9 6 4.4400 -4.6791 1.1767 10 8 5.2601 -4.9203 0.3165 11 7 4.1764 -5.5927 2.1318 12 6 3.1862 -5.3231 3.1863 13 6 2.1289 -6.4280 3.1247 14 6 2.7654 -7.7961 3.2117 15 1 1.9892 -8.5477 3.0676 16 6 3.8490 -8.0295 2.1427 17 1 3.4309 -8.2222 1.1548 18 6 4.5771 -9.2702 2.7464 19 6 4.5364 -8.9805 4.2634 20 7 3.4182 -8.0487 4.4983 21 6 3.0547 -7.5139 5.7053 22 1 2.2152 -6.8371 5.7653 23 6 3.7659 -7.8407 6.8518 24 7 4.7894 -8.6651 6.7787 25 14 3.2704 -7.1105 8.4982 26 1 2.0969 -6.2200 8.3117 27 1 2.9180 -8.2043 9.4388 28 1 4.4031 -6.3265 9.0529 29 6 4.8632 -6.8869 2.1486 30 7 2.1484 -1.1513 -0.0060 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3632 0.8900 0.5138 34 1 3.9908 2.1374 -0.0001 35 1 5.2609 -0.0003 -0.0024 36 1 5.2684 -2.3380 0.0868 37 1 3.9903 -3.0386 -0.9351 38 1 2.6433 -3.5313 1.0876 39 1 3.9212 -2.8307 2.1095 40 1 3.6732 -5.3316 4.1615 41 1 2.7181 -4.3538 3.0146 42 1 1.4331 -6.3038 3.9545 43 1 1.5824 -6.3479 2.1849 44 1 5.6060 -9.3257 2.3909 45 1 4.0391 -10.1891 2.5136 46 1 5.4737 -8.5224 4.5791 47 1 4.3711 -9.9053 4.8162 48 1 5.2861 -8.8937 7.5798 49 1 5.5017 -6.9684 1.2689 50 1 5.4779 -6.9579 3.0460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036778702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:41 Heat of formation + Delta-G solvation = 16.129887 kcal Electronic energy + Delta-G solvation = -30571.760614 eV Core-core repulsion = 26598.643419 eV Total energy + Delta-G solvation = -3973.117195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.07844 -41.46274 -39.77112 -36.50248 -36.10784 -34.62334 -34.33337 -33.17866 -32.59259 -31.02626 -29.52551 -29.19257 -27.38705 -26.56301 -25.24455 -24.03311 -23.92592 -22.70786 -21.81217 -20.80567 -19.59099 -18.57264 -18.46797 -18.07603 -17.07970 -16.97983 -16.84154 -16.62416 -16.22246 -16.08572 -15.97811 -15.65502 -15.16392 -15.00698 -14.47690 -14.32957 -14.04319 -13.97101 -13.93818 -13.65013 -13.46585 -13.23759 -13.17191 -13.09480 -12.93800 -12.84136 -12.61428 -12.52719 -12.27852 -12.21617 -11.93628 -11.78893 -11.64936 -11.52910 -11.50455 -11.43942 -11.17127 -10.77872 -10.63426 -10.31591 -10.19739 -9.56645 -8.78941 -7.78077 -5.10852 -0.06077 0.10472 1.47925 1.48994 1.57972 1.63643 2.04681 2.53380 2.75254 2.94148 3.17031 3.40163 3.41977 3.58790 3.71107 3.82347 3.91435 4.06663 4.07370 4.09005 4.15074 4.24086 4.24741 4.28369 4.46593 4.50588 4.58869 4.59576 4.63106 4.64645 4.73892 4.77524 4.84291 4.85515 4.92212 4.97557 4.99377 5.10087 5.10690 5.14892 5.26183 5.28172 5.40635 5.51842 5.55345 5.61403 5.69840 5.82064 6.08413 6.25689 6.52431 7.14461 7.16166 7.17142 7.85850 8.53010 9.33764 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.002704 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.928143 B =10353.332489 C =11422.742294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.301 3.699 3 N -0.545 5.545 4 C 0.148 3.852 5 C -0.229 4.229 6 C 0.170 3.830 7 C -0.047 4.047 8 C -0.119 4.119 9 C 0.515 3.485 10 O -0.584 6.584 11 N -0.602 5.602 12 C 0.119 3.881 13 C -0.124 4.124 14 C 0.161 3.839 15 H 0.014 0.986 16 C -0.102 4.102 17 H 0.103 0.897 18 C -0.130 4.130 19 C 0.185 3.815 20 N -0.607 5.607 21 C -0.214 4.214 22 H 0.091 0.909 23 C -0.070 4.070 24 N -0.954 5.954 25 Si 0.966 3.034 26 H -0.260 1.260 27 H -0.301 1.301 28 H -0.299 1.299 29 C 0.133 3.867 30 N -0.535 5.535 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.201 0.799 35 H 0.174 0.826 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.011 0.989 47 H 0.003 0.997 48 H 0.241 0.759 49 H 0.080 0.920 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.979 17.005 -15.329 23.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.035 3.965 3 N -0.261 5.261 4 C -0.017 4.017 5 C -0.251 4.251 6 C 0.025 3.975 7 C -0.086 4.086 8 C -0.159 4.159 9 C 0.305 3.695 10 O -0.465 6.465 11 N -0.333 5.333 12 C -0.003 4.003 13 C -0.163 4.163 14 C 0.055 3.945 15 H 0.032 0.968 16 C -0.122 4.122 17 H 0.122 0.878 18 C -0.169 4.169 19 C 0.060 3.940 20 N -0.333 5.333 21 C -0.343 4.343 22 H 0.109 0.891 23 C -0.263 4.263 24 N -0.605 5.605 25 Si 0.797 3.203 26 H -0.184 1.184 27 H -0.229 1.229 28 H -0.227 1.227 29 C 0.010 3.990 30 N -0.250 5.250 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.217 0.783 35 H 0.191 0.809 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.075 0.925 41 H 0.126 0.874 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.029 0.971 47 H 0.021 0.979 48 H 0.051 0.949 49 H 0.098 0.902 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.511 16.887 -15.556 23.612 hybrid contribution 1.169 -0.370 1.533 1.963 sum -4.342 16.517 -14.023 22.098 Atomic orbital electron populations 1.20649 0.84161 1.04788 1.04610 1.23790 0.99408 0.83288 0.90057 1.68323 1.11343 1.30614 1.15802 1.23833 0.89246 1.00063 0.88568 1.23085 1.04381 0.93406 1.04195 1.21846 0.89642 0.96399 0.89652 1.20269 0.99609 0.89608 0.99087 1.21509 1.02155 0.91565 1.00699 1.21044 0.82219 0.86341 0.79877 1.90642 1.36892 1.80265 1.38721 1.48120 1.41303 1.15971 1.27917 1.21743 0.89183 0.99246 0.90113 1.21541 0.97845 0.94309 1.02588 1.20483 0.93285 0.95332 0.85401 0.96814 1.22624 0.96286 0.94604 0.98718 0.87841 1.23009 1.00742 0.97517 0.95613 1.20962 0.90238 0.91807 0.91014 1.44550 1.33777 1.52305 1.02650 1.19384 1.10387 1.20548 0.83975 0.89124 1.25529 0.98695 1.01088 1.00964 1.70186 1.22955 1.40061 1.27266 0.85164 0.77433 0.77327 0.80425 1.18410 1.22861 1.22713 1.21202 0.94396 0.82066 1.01300 1.68087 1.10185 1.31071 1.15704 0.88725 0.89127 0.88913 0.78278 0.80874 0.88344 0.89448 0.87006 0.87937 0.92463 0.87406 0.90996 0.89825 0.90479 0.90895 0.97100 0.97860 0.94926 0.90157 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.32 71.24 0.74 -0.40 16 2 C 0.30 5.95 7.64 138.75 1.06 7.01 16 3 N -0.55 -10.48 10.33 -187.82 -1.94 -12.42 16 4 C 0.15 2.12 11.31 84.71 0.96 3.08 16 5 C -0.23 -3.30 9.80 22.44 0.22 -3.08 16 6 C 0.17 3.20 6.20 42.56 0.26 3.47 16 7 C -0.05 -0.91 4.94 29.85 0.15 -0.76 16 8 C -0.12 -2.49 3.93 29.85 0.12 -2.37 16 9 C 0.51 14.78 7.71 87.66 0.68 15.45 16 10 O -0.58 -20.11 15.41 -3.02 -0.05 -20.15 16 11 N -0.60 -18.55 2.94 -820.43 -2.41 -20.96 16 12 C 0.12 3.51 6.27 86.27 0.54 4.05 16 13 C -0.12 -3.78 5.19 30.01 0.16 -3.62 16 14 C 0.16 6.00 2.85 44.73 0.13 6.12 16 15 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 16 C -0.10 -3.37 3.84 -9.49 -0.04 -3.41 16 17 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 18 C -0.13 -4.66 6.28 32.15 0.20 -4.46 16 19 C 0.18 8.86 4.64 86.71 0.40 9.26 16 20 N -0.61 -28.65 3.12 -674.34 -2.11 -30.76 16 21 C -0.21 -10.98 9.02 84.04 0.76 -10.22 16 22 H 0.09 4.35 6.69 -2.91 -0.02 4.33 16 23 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 24 N -0.95 -56.48 10.38 21.65 0.22 -56.25 16 25 Si 0.97 44.46 29.55 68.60 2.03 46.48 16 26 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 27 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 28 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 29 C 0.13 4.60 5.44 86.30 0.47 5.06 16 30 N -0.53 -11.32 9.94 -176.03 -1.75 -13.07 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.20 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.17 1.49 8.01 -2.91 -0.02 1.47 16 36 H 0.10 1.74 7.90 -2.39 -0.02 1.72 16 37 H 0.09 1.84 8.10 -2.38 -0.02 1.82 16 38 H 0.11 2.21 7.62 -2.39 -0.02 2.19 16 39 H 0.10 1.93 7.90 -2.39 -0.02 1.91 16 40 H 0.06 2.08 7.48 -2.39 -0.02 2.07 16 41 H 0.11 2.40 5.99 -2.38 -0.01 2.39 16 42 H 0.07 2.27 7.01 -2.39 -0.02 2.25 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.08 2.52 7.97 -2.39 -0.02 2.50 16 45 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.01 0.59 6.99 -2.39 -0.02 0.57 16 47 H 0.00 0.17 7.56 -2.38 -0.02 0.16 16 48 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 49 H 0.08 2.74 7.00 -2.39 -0.02 2.73 16 50 H 0.05 1.86 6.79 -2.38 -0.02 1.85 16 Total: -1.00 -70.78 390.23 2.20 -68.59 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.94 Total: 16.74 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 7.26 Total: 21.80 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -7.98 Total: -133.46 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.05 Total: -20.15 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -70.78 2.20 -68.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036778702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.715 kcal (2) G-P(sol) polarization free energy of solvation -70.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds