Wall clock time and date at job start Wed Apr 1 2020 03:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46862 * 2 1 4 4 C 1.38551 * 120.01592 * 124.99924 * 3 2 1 5 5 C 1.40072 * 117.82000 * 180.02562 * 4 3 2 6 6 C 1.48133 * 121.14882 * 180.02562 * 5 4 3 7 7 O 1.21517 * 119.99887 * 231.87659 * 6 5 4 8 8 N 1.34772 * 120.00165 * 51.87135 * 6 5 4 9 9 C 1.46599 * 119.68361 * 355.80760 * 8 6 5 10 10 C 1.53952 * 110.57536 * 132.19467 * 9 8 6 11 11 C 1.51517 * 107.34611 * 51.05961 * 10 9 8 12 12 H 1.09005 * 108.80716 * 53.43160 * 11 10 9 13 13 C 1.55097 * 107.76469 * 295.29543 * 11 10 9 14 14 H 1.08996 * 111.33882 * 308.99750 * 13 11 10 15 15 C 1.53746 * 100.31946 * 191.11542 * 13 11 10 16 16 C 1.55286 * 101.84374 * 38.94994 * 15 13 11 17 17 N 1.45468 * 117.35119 * 178.09105 * 11 10 9 18 18 C 1.36935 * 126.40159 * 329.40968 * 17 11 10 19 19 H 1.07999 * 120.00293 * 17.37325 * 18 17 11 20 20 C 1.38814 * 119.99538 * 197.36804 * 18 17 11 21 21 N 1.31619 * 119.99753 * 185.78374 * 20 18 17 22 22 Si 1.86792 * 120.00282 * 5.78554 * 20 18 17 23 23 H 1.48503 * 109.47431 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47369 * 59.99366 * 22 20 18 25 25 H 1.48508 * 109.46987 * 299.99659 * 22 20 18 26 26 C 1.47797 * 119.83565 * 176.16093 * 8 6 5 27 27 C 1.39771 * 117.70380 * 0.27604 * 5 4 3 28 28 C 1.50698 * 120.17187 * 179.71231 * 27 5 4 29 29 N 1.31892 * 119.65535 * 359.43475 * 27 5 4 30 30 N 1.28279 * 122.32884 * 0.59106 * 29 27 5 31 31 H 1.09003 * 109.47137 * 60.00237 * 1 2 3 32 32 H 1.09001 * 109.46842 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47473 * 300.00125 * 1 2 3 34 34 H 1.08998 * 109.47473 * 239.99875 * 2 1 3 35 35 H 1.09003 * 109.47137 * 119.99763 * 2 1 3 36 36 H 1.08003 * 121.09031 * 0.04432 * 4 3 2 37 37 H 1.09003 * 109.25138 * 11.91516 * 9 8 6 38 38 H 1.09001 * 109.22725 * 252.46608 * 9 8 6 39 39 H 1.08994 * 109.88642 * 291.59409 * 10 9 8 40 40 H 1.09008 * 109.87658 * 170.51188 * 10 9 8 41 41 H 1.08997 * 110.95530 * 280.80451 * 15 13 11 42 42 H 1.09001 * 110.95479 * 157.08688 * 15 13 11 43 43 H 1.08997 * 109.91882 * 218.17155 * 16 15 13 44 44 H 1.08995 * 110.09297 * 96.95730 * 16 15 13 45 45 H 0.97004 * 120.00081 * 354.96063 * 21 20 18 46 46 H 1.08995 * 110.64640 * 112.73756 * 26 8 6 47 47 H 1.09003 * 109.73132 * 351.00655 * 26 8 6 48 48 H 1.08995 * 109.47666 * 84.34228 * 28 27 5 49 49 H 1.09001 * 109.47101 * 204.35471 * 28 27 5 50 50 H 1.09008 * 109.47018 * 324.34458 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9120 1.8450 0.9827 5 6 3.3491 3.1751 0.9391 6 6 4.2900 3.7061 1.9525 7 8 4.0242 4.7296 2.5511 8 7 5.4409 3.0540 2.2106 9 6 5.7125 1.7724 1.5526 10 6 7.1347 1.7573 0.9635 11 6 8.0841 2.1853 2.0640 12 1 7.9174 1.5544 2.9371 13 6 7.7521 3.6554 2.4302 14 1 7.7181 4.2873 1.5427 15 6 8.9619 3.9989 3.3145 16 6 10.1175 3.2796 2.5672 17 7 9.5045 2.2059 1.7507 18 6 10.1528 1.3895 0.8628 19 1 9.5894 0.8438 0.1204 20 6 11.5341 1.2634 0.9170 21 7 12.1683 0.5704 -0.0049 22 14 12.4929 2.0771 2.2982 23 1 13.9408 1.7932 2.1299 24 1 12.0321 1.5402 3.6038 25 1 12.2679 3.5445 2.2593 26 6 6.4160 3.6309 3.1596 27 6 2.8625 3.9855 -0.0905 28 6 3.2911 5.4270 -0.1866 29 7 2.0306 3.4805 -0.9808 30 7 1.6342 2.2613 -0.9351 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.2500 1.1720 1.7569 37 1 4.9897 1.6196 0.7511 38 1 5.6165 0.9674 2.2813 39 1 7.1973 2.4544 0.1279 40 1 7.3861 0.7512 0.6276 41 1 8.8370 3.5960 4.3196 42 1 9.1286 5.0757 3.3459 43 1 10.8130 2.8477 3.2868 44 1 10.6415 3.9840 1.9213 45 1 11.6661 0.0874 -0.6799 46 1 6.4905 3.0151 4.0559 47 1 6.1159 4.6447 3.4248 48 1 4.2418 5.4890 -0.7161 49 1 2.5353 5.9954 -0.7287 50 1 3.4061 5.8395 0.8159 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036779045.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:21 Heat of formation + Delta-G solvation = 58.841887 kcal Electronic energy + Delta-G solvation = -31209.358998 eV Core-core repulsion = 27238.093934 eV Total energy + Delta-G solvation = -3971.265064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.80335 -40.30853 -38.67822 -36.00392 -35.47771 -34.04577 -32.88983 -31.96715 -31.83397 -30.41693 -28.58607 -28.08406 -26.47874 -24.93327 -23.79149 -23.59932 -22.78046 -22.44508 -20.70059 -20.19925 -19.41423 -17.98377 -17.68499 -17.00211 -16.41420 -16.16775 -15.68980 -15.36095 -15.20627 -15.13616 -14.89886 -14.45020 -14.25510 -14.01683 -13.72690 -13.36198 -13.28503 -13.17743 -12.95600 -12.90156 -12.65668 -12.51392 -12.32655 -12.17360 -12.05594 -11.58483 -11.54605 -11.27416 -11.12306 -11.06678 -10.94596 -10.71575 -10.64822 -10.35119 -10.03912 -9.94744 -9.76790 -9.69136 -9.27393 -9.10973 -8.85939 -8.79710 -7.12764 -6.33274 -3.34496 0.13302 0.51224 2.24366 2.60994 3.15035 3.36178 3.42323 3.57185 3.64611 3.82212 4.01524 4.11897 4.37096 4.54311 4.59024 4.61997 4.71717 4.77237 4.86959 4.91175 5.01422 5.12431 5.15110 5.16170 5.21042 5.27376 5.36678 5.38130 5.40752 5.49202 5.51773 5.59636 5.63956 5.66181 5.73010 5.77466 5.83175 5.89632 5.92261 5.97114 5.98524 6.03460 6.15963 6.30969 6.36383 6.51089 6.68286 6.78043 7.05163 7.63342 7.74975 8.25309 8.38176 8.95669 9.50429 10.17836 11.14009 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.003018 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.296445 B = 9275.878248 C =10171.025560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.069 4.069 3 C 0.062 3.938 4 C -0.084 4.084 5 C -0.118 4.118 6 C 0.564 3.436 7 O -0.526 6.526 8 N -0.594 5.594 9 C 0.101 3.899 10 C -0.127 4.127 11 C 0.168 3.832 12 H 0.025 0.975 13 C -0.128 4.128 14 H 0.084 0.916 15 C -0.118 4.118 16 C 0.104 3.896 17 N -0.603 5.603 18 C -0.320 4.320 19 H 0.077 0.923 20 C -0.022 4.022 21 N -0.931 5.931 22 Si 1.078 2.922 23 H -0.302 1.302 24 H -0.297 1.297 25 H -0.284 1.284 26 C 0.128 3.872 27 C 0.110 3.890 28 C -0.116 4.116 29 N -0.238 5.238 30 N -0.224 5.224 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.156 0.844 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.034 0.966 44 H 0.051 0.949 45 H 0.261 0.739 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.287 2.780 4.777 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.082 4.082 4 C -0.113 4.113 5 C -0.133 4.133 6 C 0.350 3.650 7 O -0.403 6.403 8 N -0.325 5.325 9 C -0.022 4.022 10 C -0.166 4.166 11 C 0.060 3.940 12 H 0.043 0.957 13 C -0.148 4.148 14 H 0.103 0.897 15 C -0.157 4.157 16 C -0.020 4.020 17 N -0.329 5.329 18 C -0.448 4.448 19 H 0.094 0.906 20 C -0.222 4.222 21 N -0.572 5.572 22 Si 0.912 3.088 23 H -0.231 1.231 24 H -0.226 1.226 25 H -0.211 1.211 26 C 0.007 3.993 27 C -0.034 4.034 28 C -0.174 4.174 29 N -0.080 5.080 30 N -0.066 5.066 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.174 0.826 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.113 0.887 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.720 3.776 4.221 20.517 hybrid contribution -0.596 -0.783 0.630 1.168 sum -20.315 2.993 4.851 21.100 Atomic orbital electron populations 1.21711 0.93583 1.02275 1.02862 1.20478 0.97405 0.88792 1.04070 1.22852 0.94404 0.98794 0.92164 1.22565 0.95202 0.94646 0.98907 1.21058 0.99634 0.94880 0.97702 1.17972 0.81335 0.83833 0.81827 1.90767 1.75014 1.23932 1.50612 1.48267 1.18117 1.22449 1.43706 1.22116 0.98725 0.84265 0.97127 1.21850 0.92219 1.03249 0.99323 1.20558 0.85961 0.92637 0.94822 0.95718 1.22662 0.92852 0.99859 0.99414 0.89721 1.22406 0.94767 1.00209 0.98302 1.22490 0.94916 0.90823 0.93771 1.44487 1.02378 1.37259 1.48813 1.20101 0.92095 1.22809 1.09762 0.90566 1.25916 0.93818 1.00096 1.02350 1.70922 1.37312 1.33053 1.15933 0.83756 0.74795 0.75722 0.74512 1.23055 1.22618 1.21106 1.21697 0.86753 1.00034 0.90811 1.22985 0.92148 0.98432 0.89843 1.20940 1.02553 0.88485 1.05469 1.73064 1.08834 1.05466 1.20596 1.72750 1.17214 0.97461 1.19168 0.91332 0.91741 0.92811 0.89057 0.89727 0.82603 0.90178 0.90859 0.91427 0.90037 0.91247 0.91054 0.94857 0.93103 0.92936 0.90476 0.88704 0.89610 0.89565 0.88162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.77 37.16 0.36 -0.62 16 2 C -0.07 -0.47 6.35 -27.88 -0.18 -0.65 16 3 C 0.06 0.63 6.25 -82.45 -0.52 0.11 16 4 C -0.08 -0.82 7.23 -38.78 -0.28 -1.10 16 5 C -0.12 -1.41 4.90 -104.57 -0.51 -1.92 16 6 C 0.56 7.34 6.76 -12.20 -0.08 7.26 16 7 O -0.53 -7.99 14.49 5.35 0.08 -7.91 16 8 N -0.59 -7.35 2.99 -173.43 -0.52 -7.87 16 9 C 0.10 1.17 5.24 -3.49 -0.02 1.15 16 10 C -0.13 -1.99 5.40 -26.98 -0.15 -2.14 16 11 C 0.17 3.01 2.57 -68.13 -0.18 2.84 16 12 H 0.03 0.46 7.91 -51.93 -0.41 0.04 16 13 C -0.13 -1.92 2.84 -89.51 -0.25 -2.17 16 14 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 15 C -0.12 -1.80 6.54 -25.13 -0.16 -1.96 16 16 C 0.10 2.13 4.66 -1.92 -0.01 2.12 16 17 N -0.60 -13.78 3.25 -163.26 -0.53 -14.31 16 18 C -0.32 -8.69 10.23 -15.06 -0.15 -8.84 16 19 H 0.08 2.17 7.44 -52.49 -0.39 1.78 16 20 C -0.02 -0.64 5.50 -17.43 -0.10 -0.73 16 21 N -0.93 -28.66 13.70 55.49 0.76 -27.90 16 22 Si 1.08 26.18 24.58 -169.99 -4.18 22.01 16 23 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 24 H -0.30 -6.94 6.79 56.52 0.38 -6.56 16 25 H -0.28 -6.27 5.29 56.52 0.30 -5.97 16 26 C 0.13 1.61 5.97 -3.72 -0.02 1.59 16 27 C 0.11 1.39 6.90 -81.99 -0.57 0.82 16 28 C -0.12 -1.26 9.72 36.00 0.35 -0.91 16 29 N -0.24 -3.23 11.42 33.81 0.39 -2.84 16 30 N -0.22 -2.84 11.04 33.58 0.37 -2.47 16 31 H 0.07 0.54 7.96 -51.93 -0.41 0.13 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.41 7.92 -51.93 -0.41 0.00 16 36 H 0.16 1.11 7.22 -52.48 -0.38 0.73 16 37 H 0.08 0.84 4.74 -51.93 -0.25 0.60 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 40 H 0.08 1.36 7.73 -51.92 -0.40 0.96 16 41 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.03 0.72 4.08 -51.93 -0.21 0.51 16 44 H 0.05 1.10 6.58 -51.93 -0.34 0.76 16 45 H 0.26 7.92 8.73 -40.82 -0.36 7.56 16 46 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 47 H 0.09 1.19 7.01 -51.93 -0.36 0.83 16 48 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.10 1.17 5.96 -51.92 -0.31 0.86 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -33.15 380.17 -8.16 -41.31 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.79 Total: -0.58 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -2.46 Total: -5.16 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.47 Total: -55.39 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.08 Total: -7.91 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -4.18 Total: 22.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.15 -8.16 -41.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036779045.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.148 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds