Wall clock time and date at job start Wed Apr 1 2020 03:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46862 * 2 1 4 4 C 1.38551 * 120.01592 * 124.99924 * 3 2 1 5 5 C 1.40072 * 117.82000 * 180.02562 * 4 3 2 6 6 C 1.48133 * 121.14882 * 180.02562 * 5 4 3 7 7 O 1.21517 * 119.99887 * 231.87659 * 6 5 4 8 8 N 1.34772 * 120.00165 * 51.87135 * 6 5 4 9 9 C 1.46599 * 119.68361 * 355.80760 * 8 6 5 10 10 C 1.53952 * 110.57536 * 132.19467 * 9 8 6 11 11 C 1.51517 * 107.34611 * 51.05961 * 10 9 8 12 12 H 1.09005 * 108.80716 * 53.43160 * 11 10 9 13 13 C 1.55097 * 107.76469 * 295.29543 * 11 10 9 14 14 H 1.08996 * 111.33882 * 308.99750 * 13 11 10 15 15 C 1.53746 * 100.31946 * 191.11542 * 13 11 10 16 16 C 1.55286 * 101.84374 * 38.94994 * 15 13 11 17 17 N 1.45468 * 117.35119 * 178.09105 * 11 10 9 18 18 C 1.36935 * 126.40159 * 329.40968 * 17 11 10 19 19 H 1.07999 * 120.00293 * 17.37325 * 18 17 11 20 20 C 1.38814 * 119.99538 * 197.36804 * 18 17 11 21 21 N 1.31619 * 119.99753 * 185.78374 * 20 18 17 22 22 Si 1.86792 * 120.00282 * 5.78554 * 20 18 17 23 23 H 1.48503 * 109.47431 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47369 * 59.99366 * 22 20 18 25 25 H 1.48508 * 109.46987 * 299.99659 * 22 20 18 26 26 C 1.47797 * 119.83565 * 176.16093 * 8 6 5 27 27 C 1.39771 * 117.70380 * 0.27604 * 5 4 3 28 28 C 1.50698 * 120.17187 * 179.71231 * 27 5 4 29 29 N 1.31892 * 119.65535 * 359.43475 * 27 5 4 30 30 N 1.28279 * 122.32884 * 0.59106 * 29 27 5 31 31 H 1.09003 * 109.47137 * 60.00237 * 1 2 3 32 32 H 1.09001 * 109.46842 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47473 * 300.00125 * 1 2 3 34 34 H 1.08998 * 109.47473 * 239.99875 * 2 1 3 35 35 H 1.09003 * 109.47137 * 119.99763 * 2 1 3 36 36 H 1.08003 * 121.09031 * 0.04432 * 4 3 2 37 37 H 1.09003 * 109.25138 * 11.91516 * 9 8 6 38 38 H 1.09001 * 109.22725 * 252.46608 * 9 8 6 39 39 H 1.08994 * 109.88642 * 291.59409 * 10 9 8 40 40 H 1.09008 * 109.87658 * 170.51188 * 10 9 8 41 41 H 1.08997 * 110.95530 * 280.80451 * 15 13 11 42 42 H 1.09001 * 110.95479 * 157.08688 * 15 13 11 43 43 H 1.08997 * 109.91882 * 218.17155 * 16 15 13 44 44 H 1.08995 * 110.09297 * 96.95730 * 16 15 13 45 45 H 0.97004 * 120.00081 * 354.96063 * 21 20 18 46 46 H 1.08995 * 110.64640 * 112.73756 * 26 8 6 47 47 H 1.09003 * 109.73132 * 351.00655 * 26 8 6 48 48 H 1.08995 * 109.47666 * 84.34228 * 28 27 5 49 49 H 1.09001 * 109.47101 * 204.35471 * 28 27 5 50 50 H 1.09008 * 109.47018 * 324.34458 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9120 1.8450 0.9827 5 6 3.3491 3.1751 0.9391 6 6 4.2900 3.7061 1.9525 7 8 4.0242 4.7296 2.5511 8 7 5.4409 3.0540 2.2106 9 6 5.7125 1.7724 1.5526 10 6 7.1347 1.7573 0.9635 11 6 8.0841 2.1853 2.0640 12 1 7.9174 1.5544 2.9371 13 6 7.7521 3.6554 2.4302 14 1 7.7181 4.2873 1.5427 15 6 8.9619 3.9989 3.3145 16 6 10.1175 3.2796 2.5672 17 7 9.5045 2.2059 1.7507 18 6 10.1528 1.3895 0.8628 19 1 9.5894 0.8438 0.1204 20 6 11.5341 1.2634 0.9170 21 7 12.1683 0.5704 -0.0049 22 14 12.4929 2.0771 2.2982 23 1 13.9408 1.7932 2.1299 24 1 12.0321 1.5402 3.6038 25 1 12.2679 3.5445 2.2593 26 6 6.4160 3.6309 3.1596 27 6 2.8625 3.9855 -0.0905 28 6 3.2911 5.4270 -0.1866 29 7 2.0306 3.4805 -0.9808 30 7 1.6342 2.2613 -0.9351 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.2500 1.1720 1.7569 37 1 4.9897 1.6196 0.7511 38 1 5.6165 0.9674 2.2813 39 1 7.1973 2.4544 0.1279 40 1 7.3861 0.7512 0.6276 41 1 8.8370 3.5960 4.3196 42 1 9.1286 5.0757 3.3459 43 1 10.8130 2.8477 3.2868 44 1 10.6415 3.9840 1.9213 45 1 11.6661 0.0874 -0.6799 46 1 6.4905 3.0151 4.0559 47 1 6.1159 4.6447 3.4248 48 1 4.2418 5.4890 -0.7161 49 1 2.5353 5.9954 -0.7287 50 1 3.4061 5.8395 0.8159 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036779045.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:20 Heat of formation + Delta-G solvation = 36.793318 kcal Electronic energy + Delta-G solvation = -31210.315095 eV Core-core repulsion = 27238.093934 eV Total energy + Delta-G solvation = -3972.221161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.70351 -41.40322 -39.92825 -37.20764 -36.25294 -35.14651 -34.53073 -33.18016 -32.77633 -31.88989 -29.88285 -28.96036 -27.49930 -26.29744 -24.97253 -24.64678 -23.95432 -23.30290 -22.23694 -21.37833 -20.58789 -19.38087 -18.85590 -18.28663 -17.43281 -17.06707 -16.88677 -16.60638 -16.56537 -16.12552 -15.87896 -15.64393 -15.25665 -15.04546 -14.86694 -14.74543 -14.51492 -14.38650 -14.07284 -14.01774 -13.73212 -13.48838 -13.36530 -13.23949 -12.96284 -12.78045 -12.69584 -12.50584 -12.30523 -12.24781 -12.16219 -11.88239 -11.61643 -11.60336 -11.40910 -11.26674 -11.11586 -10.95704 -10.68229 -10.64529 -10.58674 -9.92039 -9.09412 -8.55337 -5.49455 -0.73570 -0.31282 1.25356 1.41303 1.50356 1.64296 1.71505 2.28212 2.56171 2.77611 2.91700 3.11290 3.19129 3.24619 3.32933 3.60719 3.61146 3.72291 3.84914 3.91705 3.97730 4.00642 4.08167 4.26129 4.32001 4.34828 4.35239 4.41295 4.50044 4.51970 4.53920 4.59357 4.61622 4.72827 4.75122 4.79976 4.83644 4.86998 4.95453 4.97564 5.04597 5.08583 5.11942 5.16661 5.27660 5.32801 5.40257 5.45629 5.63290 6.05024 6.12746 6.75905 6.83075 7.49611 7.51267 8.15453 8.91995 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.003018 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.296445 B = 9275.878248 C =10171.025560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 C 0.064 3.936 4 C -0.071 4.071 5 C -0.133 4.133 6 C 0.571 3.429 7 O -0.548 6.548 8 N -0.592 5.592 9 C 0.112 3.888 10 C -0.123 4.123 11 C 0.154 3.846 12 H 0.037 0.963 13 C -0.113 4.113 14 H 0.067 0.933 15 C -0.105 4.105 16 C 0.091 3.909 17 N -0.626 5.626 18 C -0.297 4.297 19 H 0.048 0.952 20 C -0.086 4.086 21 N -0.973 5.973 22 Si 1.113 2.887 23 H -0.319 1.319 24 H -0.280 1.280 25 H -0.251 1.251 26 C 0.135 3.865 27 C 0.098 3.902 28 C -0.112 4.112 29 N -0.264 5.264 30 N -0.249 5.249 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.190 0.810 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.031 0.969 44 H 0.035 0.965 45 H 0.245 0.755 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.075 2.937 7.687 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.081 4.081 4 C -0.101 4.101 5 C -0.147 4.147 6 C 0.358 3.642 7 O -0.427 6.427 8 N -0.323 5.323 9 C -0.011 4.011 10 C -0.163 4.163 11 C 0.047 3.953 12 H 0.055 0.945 13 C -0.133 4.133 14 H 0.086 0.914 15 C -0.144 4.144 16 C -0.033 4.033 17 N -0.352 5.352 18 C -0.426 4.426 19 H 0.066 0.934 20 C -0.278 4.278 21 N -0.618 5.618 22 Si 0.942 3.058 23 H -0.249 1.249 24 H -0.208 1.208 25 H -0.176 1.176 26 C 0.014 3.986 27 C -0.048 4.048 28 C -0.170 4.170 29 N -0.106 5.106 30 N -0.091 5.091 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.133 0.867 36 H 0.207 0.793 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.106 0.894 49 H 0.113 0.887 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.580 3.962 7.138 23.073 hybrid contribution -0.154 -0.891 -0.345 0.968 sum -21.735 3.071 6.793 22.978 Atomic orbital electron populations 1.21697 0.93540 1.03212 1.01825 1.20667 0.97380 0.86886 1.05804 1.23391 0.93744 0.99759 0.91253 1.22952 0.93975 0.94088 0.99052 1.21057 1.00123 0.95911 0.97606 1.18004 0.81417 0.83307 0.81485 1.90760 1.75612 1.24860 1.51464 1.48268 1.17950 1.22552 1.43576 1.22087 0.95917 0.84836 0.98221 1.21762 0.94668 1.01475 0.98352 1.20880 0.83581 0.95112 0.95700 0.94544 1.22513 0.94525 0.97039 0.99225 0.91404 1.22414 0.91983 1.01317 0.98649 1.22637 0.97046 0.90157 0.93468 1.44616 1.04768 1.37510 1.48338 1.19995 0.92018 1.21551 1.08997 0.93376 1.27157 0.95591 1.01077 1.03943 1.71029 1.37576 1.35725 1.17442 0.83376 0.72553 0.77140 0.72768 1.24887 1.20767 1.17571 1.21697 0.84873 1.01059 0.91004 1.23189 0.92283 0.99108 0.90179 1.20912 1.02935 0.88072 1.05108 1.73015 1.09768 1.06269 1.21521 1.72678 1.18125 0.97633 1.20621 0.93151 0.89811 0.93094 0.88498 0.86729 0.79256 0.88896 0.87824 0.93670 0.91761 0.88587 0.88470 0.95153 0.94732 0.94559 0.88136 0.88172 0.89383 0.88724 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.77 71.98 0.70 -0.92 16 2 C -0.07 -0.74 6.35 29.85 0.19 -0.55 16 3 C 0.06 1.15 6.25 42.63 0.27 1.42 16 4 C -0.07 -1.17 7.23 22.79 0.16 -1.01 16 5 C -0.13 -2.90 4.90 -19.83 -0.10 -2.99 16 6 C 0.57 13.35 6.76 86.87 0.59 13.93 16 7 O -0.55 -15.41 14.49 -3.77 -0.05 -15.47 16 8 N -0.59 -12.65 2.99 -820.90 -2.46 -15.11 16 9 C 0.11 2.24 5.24 86.68 0.45 2.69 16 10 C -0.12 -3.73 5.40 30.43 0.16 -3.56 16 11 C 0.15 5.19 2.57 45.42 0.12 5.31 16 12 H 0.04 1.19 7.91 -2.38 -0.02 1.18 16 13 C -0.11 -3.05 2.84 -10.08 -0.03 -3.08 16 14 H 0.07 2.08 8.11 -2.39 -0.02 2.06 16 15 C -0.11 -2.78 6.54 31.63 0.21 -2.57 16 16 C 0.09 3.50 4.66 86.85 0.40 3.90 16 17 N -0.63 -28.07 3.25 -670.44 -2.18 -30.24 16 18 C -0.30 -16.44 10.23 84.03 0.86 -15.58 16 19 H 0.05 2.87 7.44 -2.91 -0.02 2.85 16 20 C -0.09 -5.02 5.50 84.86 0.47 -4.55 16 21 N -0.97 -62.31 13.70 21.65 0.30 -62.01 16 22 Si 1.11 52.86 24.58 68.60 1.69 54.54 16 23 H -0.32 -15.92 7.11 99.48 0.71 -15.22 16 24 H -0.28 -12.34 6.79 99.48 0.68 -11.67 16 25 H -0.25 -10.46 5.29 99.48 0.53 -9.93 16 26 C 0.13 2.83 5.97 85.88 0.51 3.34 16 27 C 0.10 2.39 6.90 42.92 0.30 2.69 16 28 C -0.11 -2.40 9.72 71.24 0.69 -1.71 16 29 N -0.26 -7.13 11.42 -46.94 -0.54 -7.66 16 30 N -0.25 -6.14 11.04 -47.68 -0.53 -6.67 16 31 H 0.05 0.75 7.96 -2.39 -0.02 0.73 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.11 0.58 7.92 -2.39 -0.02 0.56 16 36 H 0.19 1.73 7.22 -2.91 -0.02 1.71 16 37 H 0.09 1.66 4.74 -2.39 -0.01 1.65 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.04 1.54 8.11 -2.39 -0.02 1.52 16 40 H 0.06 2.15 7.73 -2.38 -0.02 2.13 16 41 H 0.10 2.08 8.11 -2.39 -0.02 2.06 16 42 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.03 1.22 4.08 -2.39 -0.01 1.21 16 44 H 0.03 1.43 6.58 -2.39 -0.02 1.42 16 45 H 0.25 15.77 8.73 -92.71 -0.81 14.96 16 46 H 0.10 1.73 8.07 -2.39 -0.02 1.71 16 47 H 0.10 2.10 7.01 -2.39 -0.02 2.09 16 48 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.09 2.12 5.96 -2.38 -0.01 2.11 16 Total: -1.00 -76.34 380.17 2.89 -73.45 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.70 Total: 12.42 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 5.96 Total: -3.26 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -5.40 Total: -121.69 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.05 Total: -15.47 kcal Atomic # 14 Polarization: 52.86 SS G_CDS: 1.69 Total: 54.54 kcal Total: -76.34 2.89 -73.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036779045.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.240 kcal (2) G-P(sol) polarization free energy of solvation -76.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds