Wall clock time and date at job start Wed Apr 1 2020 03:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46778 * 2 1 4 4 C 1.50706 * 109.46761 * 119.99529 * 2 1 3 5 5 N 1.32162 * 120.53985 * 305.21236 * 4 2 1 6 6 C 1.31849 * 120.96782 * 180.31392 * 5 4 2 7 7 N 1.31895 * 122.09443 * 359.65866 * 6 5 4 8 8 C 1.32133 * 120.96596 * 0.02562 * 7 6 5 9 9 C 1.39926 * 120.53452 * 124.91031 * 4 2 1 10 10 C 1.47835 * 120.93880 * 0.02562 * 9 4 2 11 11 O 1.21552 * 119.99764 * 305.46359 * 10 9 4 12 12 N 1.34777 * 120.00096 * 125.47539 * 10 9 4 13 13 C 1.46594 * 119.68649 * 354.35287 * 12 10 9 14 14 C 1.53954 * 110.58499 * 227.82076 * 13 12 10 15 15 C 1.51528 * 107.34198 * 308.94741 * 14 13 12 16 16 H 1.08996 * 108.81489 * 306.56018 * 15 14 13 17 17 C 1.55369 * 107.77911 * 64.85899 * 15 14 13 18 18 H 1.08998 * 111.50207 * 51.16192 * 17 15 14 19 19 C 1.53738 * 100.22055 * 169.05546 * 17 15 14 20 20 C 1.55284 * 101.84540 * 320.91231 * 19 17 15 21 21 N 1.45463 * 117.33740 * 181.89331 * 15 14 13 22 22 C 1.36941 * 126.41008 * 30.63325 * 21 15 14 23 23 H 1.08006 * 119.99296 * 359.97438 * 22 21 15 24 24 C 1.38806 * 120.00619 * 180.02562 * 22 21 15 25 25 N 1.31627 * 119.99721 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00311 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47057 * 59.99665 * 26 24 22 28 28 H 1.48497 * 109.46907 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.46974 * 299.99727 * 26 24 22 30 30 C 1.47726 * 119.68339 * 174.36045 * 12 10 9 31 31 H 1.09006 * 109.47165 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47328 * 300.00331 * 1 2 3 33 33 H 1.09005 * 109.47164 * 60.00424 * 1 2 3 34 34 H 1.08997 * 109.47328 * 239.99668 * 2 1 3 35 35 H 1.08999 * 109.47097 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47239 * 299.99484 * 3 2 1 37 37 H 1.08997 * 109.47461 * 59.99750 * 3 2 1 38 38 H 1.07999 * 118.95939 * 179.68229 * 6 5 4 39 39 H 1.07994 * 120.53847 * 179.97438 * 8 7 6 40 40 H 1.08997 * 109.25455 * 107.53201 * 13 12 10 41 41 H 1.09001 * 109.25118 * 348.10040 * 13 12 10 42 42 H 1.08995 * 109.88391 * 189.49259 * 14 13 12 43 43 H 1.09000 * 109.94563 * 68.44166 * 14 13 12 44 44 H 1.09000 * 110.95427 * 79.05081 * 19 17 15 45 45 H 1.08997 * 110.95892 * 202.77140 * 19 17 15 46 46 H 1.09003 * 109.92278 * 141.82512 * 20 19 17 47 47 H 1.09005 * 109.91906 * 262.92956 * 20 19 17 48 48 H 0.96999 * 119.99983 * 180.02562 * 25 24 22 49 49 H 1.08998 * 110.06899 * 8.72994 * 30 12 10 50 50 H 1.09005 * 110.06477 * 247.15852 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.6373 -0.3308 2.4333 6 6 2.0761 -0.9423 3.5159 7 7 2.9168 -1.9567 3.4556 8 6 3.3585 -2.4056 2.2940 9 6 2.9195 -1.7865 1.1179 10 6 3.3855 -2.2520 -0.2056 11 8 2.5780 -2.5530 -1.0628 12 7 4.7056 -2.3427 -0.4617 13 6 5.6722 -1.8619 0.5300 14 6 6.7359 -0.9717 -0.1382 15 6 7.2845 -1.7372 -1.3253 16 1 7.6200 -2.7175 -0.9868 17 6 6.1292 -1.9178 -2.3483 18 1 5.6390 -0.9696 -2.5690 19 6 6.9182 -2.4346 -3.5624 20 6 8.2083 -1.5731 -3.4943 21 7 8.3451 -1.1058 -2.0949 22 6 9.2927 -0.2410 -1.6159 23 1 9.2959 0.0315 -0.5708 24 6 10.2483 0.2862 -2.4735 25 7 10.2440 -0.0456 -3.7473 26 14 11.5412 1.4654 -1.8199 27 1 12.3392 0.7899 -0.7653 28 1 12.4376 1.8810 -2.9284 29 1 10.8748 2.6621 -1.2462 30 6 5.1646 -2.9257 -1.7390 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9564 0.8899 38 1 1.7361 -0.6020 4.4828 39 1 4.0471 -3.2365 2.2526 40 1 6.1611 -2.7158 0.9989 41 1 5.1483 -1.2852 1.2923 42 1 7.5380 -0.7588 0.5683 43 1 6.2822 -0.0398 -0.4756 44 1 7.1507 -3.4940 -3.4540 45 1 6.3742 -2.2493 -4.4885 46 1 9.0730 -2.1766 -3.7704 47 1 8.1211 -0.7198 -4.1670 48 1 10.9120 0.3225 -4.3466 49 1 4.3162 -3.0816 -2.4054 50 1 5.6767 -3.8705 -1.5563 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036899158.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:06 Heat of formation + Delta-G solvation = 40.063612 kcal Electronic energy + Delta-G solvation = -31546.492009 eV Core-core repulsion = 27574.412658 eV Total energy + Delta-G solvation = -3972.079351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.73006 -40.04397 -38.33434 -36.37678 -35.45994 -33.47086 -32.77130 -31.88189 -31.68229 -29.60106 -28.20618 -27.31252 -25.79288 -25.15211 -24.76879 -23.32441 -22.49770 -21.07702 -20.38188 -20.03844 -19.31799 -18.20518 -17.45980 -16.96525 -16.36383 -16.22288 -15.27029 -15.15344 -15.01619 -14.71812 -14.44862 -14.28558 -14.05116 -13.87782 -13.80966 -13.32450 -13.25357 -13.13112 -12.70214 -12.53294 -12.33921 -11.89472 -11.75698 -11.72898 -11.60138 -11.52994 -11.47559 -11.06909 -10.93904 -10.85044 -10.80379 -10.74726 -10.24067 -10.19160 -9.97491 -9.93340 -9.74040 -9.66075 -9.55538 -9.50277 -8.68103 -8.66773 -6.89309 -5.76255 -3.09914 0.30387 0.71411 2.42071 2.82929 3.36557 3.40975 3.41414 3.42494 3.66909 3.79673 3.99706 4.19610 4.44598 4.58942 4.83119 4.86964 4.89325 4.94321 4.99115 5.14066 5.16500 5.24917 5.41478 5.43473 5.48993 5.50757 5.51496 5.67780 5.70119 5.71118 5.79618 5.82200 5.92262 5.96460 6.04959 6.05843 6.08630 6.14438 6.15682 6.24803 6.38565 6.53315 6.55860 6.59587 6.72829 6.98497 7.25106 7.49988 7.56091 7.71178 7.76208 7.94692 8.19397 9.14356 9.77904 10.45441 11.36071 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.003132 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.790350 B = 8939.164601 C = 9366.754944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.061 4.061 3 C -0.141 4.141 4 C 0.232 3.768 5 N -0.514 5.514 6 C 0.308 3.692 7 N -0.523 5.523 8 C 0.184 3.816 9 C -0.229 4.229 10 C 0.568 3.432 11 O -0.530 6.530 12 N -0.596 5.596 13 C 0.109 3.891 14 C -0.129 4.129 15 C 0.168 3.832 16 H 0.020 0.980 17 C -0.124 4.124 18 H 0.081 0.919 19 C -0.135 4.135 20 C 0.177 3.823 21 N -0.594 5.594 22 C -0.229 4.229 23 H 0.077 0.923 24 C -0.006 4.006 25 N -0.921 5.921 26 Si 0.909 3.091 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.127 3.873 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.200 0.800 39 H 0.173 0.827 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.038 0.962 47 H 0.055 0.945 48 H 0.253 0.747 49 H 0.093 0.907 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.539 -3.469 9.925 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.080 4.080 3 C -0.199 4.199 4 C 0.085 3.915 5 N -0.227 5.227 6 C 0.021 3.979 7 N -0.237 5.237 8 C 0.017 3.983 9 C -0.237 4.237 10 C 0.354 3.646 11 O -0.408 6.408 12 N -0.328 5.328 13 C -0.014 4.014 14 C -0.168 4.168 15 C 0.060 3.940 16 H 0.038 0.962 17 C -0.145 4.145 18 H 0.099 0.901 19 C -0.174 4.174 20 C 0.053 3.947 21 N -0.318 5.318 22 C -0.357 4.357 23 H 0.095 0.905 24 C -0.202 4.202 25 N -0.568 5.568 26 Si 0.740 3.260 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.005 3.995 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.217 0.783 39 H 0.190 0.810 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.111 0.889 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.036 -3.189 10.279 20.151 hybrid contribution 1.227 0.336 -0.273 1.301 sum -15.810 -2.853 10.006 18.926 Atomic orbital electron populations 1.21704 0.92730 1.02172 1.02572 1.20432 0.97602 0.96631 0.93298 1.21794 1.01215 0.93994 1.02858 1.21816 0.87019 0.88708 0.93955 1.68269 1.25465 1.30461 0.98538 1.25181 0.88168 0.86894 0.97635 1.68465 1.12886 1.14025 1.28317 1.23457 0.92836 0.95859 0.86180 1.21652 1.03682 1.01808 0.96556 1.17868 0.82664 0.77956 0.86135 1.90780 1.53558 1.49931 1.46491 1.48277 1.04830 1.60024 1.19657 1.21894 0.90820 0.98407 0.90300 1.21888 0.97065 0.98641 0.99187 1.20629 0.88081 0.94632 0.90699 0.96240 1.22636 0.95819 0.98634 0.97389 0.90106 1.22714 0.98554 0.99732 0.96434 1.21529 0.91504 0.95518 0.86161 1.44185 1.30467 1.52551 1.04628 1.18933 1.04744 1.18296 0.93705 0.90479 1.24785 0.99304 1.00467 0.95689 1.69927 1.36806 1.47251 1.02795 0.86242 0.81375 0.80849 0.77547 1.21168 1.21576 1.21198 1.21707 0.98542 0.95828 0.83389 0.92687 0.91606 0.91726 0.87833 0.92588 0.91406 0.91635 0.78321 0.80997 0.91157 0.90955 0.90366 0.91384 0.92274 0.91975 0.94341 0.92702 0.93658 0.88895 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 9.06 37.16 0.34 -1.00 16 2 C -0.06 -0.70 3.00 -91.77 -0.28 -0.97 16 3 C -0.14 -1.48 9.15 37.16 0.34 -1.14 16 4 C 0.23 2.79 5.52 -81.82 -0.45 2.34 16 5 N -0.51 -5.74 9.99 -10.48 -0.10 -5.84 16 6 C 0.31 2.99 12.27 -92.02 -1.13 1.86 16 7 N -0.52 -5.56 10.42 -14.24 -0.15 -5.71 16 8 C 0.18 1.94 9.19 -16.77 -0.15 1.79 16 9 C -0.23 -2.79 4.50 -104.69 -0.47 -3.26 16 10 C 0.57 7.81 6.38 -12.33 -0.08 7.73 16 11 O -0.53 -8.59 14.82 5.32 0.08 -8.51 16 12 N -0.60 -7.90 3.00 -173.61 -0.52 -8.42 16 13 C 0.11 1.35 5.38 -3.49 -0.02 1.33 16 14 C -0.13 -2.06 5.48 -26.98 -0.15 -2.21 16 15 C 0.17 3.16 2.57 -67.98 -0.17 2.99 16 16 H 0.02 0.38 7.92 -51.93 -0.41 -0.03 16 17 C -0.12 -2.07 2.86 -89.37 -0.26 -2.33 16 18 H 0.08 1.48 8.12 -51.93 -0.42 1.05 16 19 C -0.14 -2.38 6.54 -25.14 -0.16 -2.55 16 20 C 0.18 4.11 5.45 -1.92 -0.01 4.10 16 21 N -0.59 -14.27 3.35 -163.09 -0.55 -14.82 16 22 C -0.23 -6.05 9.88 -15.06 -0.15 -6.20 16 23 H 0.08 1.95 7.21 -52.48 -0.38 1.57 16 24 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 25 N -0.92 -26.37 10.44 55.49 0.58 -25.79 16 26 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 30 C 0.13 1.76 5.97 -3.76 -0.02 1.74 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.63 7.98 -51.93 -0.41 0.22 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 1.38 5.54 -51.93 -0.29 1.09 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.20 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.17 1.45 7.80 -52.49 -0.41 1.04 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.83 5.53 -51.93 -0.29 0.54 16 42 H 0.08 1.28 7.62 -51.93 -0.40 0.88 16 43 H 0.07 1.18 8.12 -51.93 -0.42 0.75 16 44 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 47 H 0.05 1.43 7.21 -51.93 -0.37 1.05 16 48 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.09 1.32 6.98 -51.93 -0.36 0.96 16 50 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 LS Contribution 388.95 15.07 5.86 5.86 Total: -1.00 -30.98 388.95 -10.67 -41.65 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.93 Total: 1.09 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -2.92 Total: 3.96 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.74 Total: -60.59 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.08 Total: -8.51 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.98 -10.67 -41.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036899158.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.716 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds