Wall clock time and date at job start Wed Apr 1 2020 03:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31909 * 119.03814 * 2 1 4 4 C 1.32183 * 121.02949 * 180.02562 * 3 2 1 5 5 C 1.38803 * 119.14550 * 359.74301 * 4 3 2 6 6 C 1.39496 * 118.26806 * 0.47939 * 5 4 3 7 7 C 1.48446 * 120.55560 * 179.80138 * 6 5 4 8 8 O 1.21482 * 119.99785 * 16.43586 * 7 6 5 9 9 N 1.34771 * 120.00351 * 196.16810 * 7 6 5 10 10 C 1.46924 * 120.62934 * 1.54567 * 9 7 6 11 11 C 1.53627 * 108.54336 * 126.37159 * 10 9 7 12 12 C 1.53040 * 109.24033 * 54.85551 * 11 10 9 13 13 C 1.53035 * 109.54098 * 298.51293 * 12 11 10 14 14 C 1.46924 * 120.63083 * 181.83155 * 9 7 6 15 15 H 1.09004 * 109.58747 * 113.79782 * 14 9 7 16 16 C 1.52996 * 109.59064 * 353.51120 * 14 9 7 17 17 H 1.09003 * 110.64068 * 317.48159 * 16 14 9 18 18 C 1.55162 * 110.71862 * 80.61553 * 16 14 9 19 19 C 1.55125 * 101.48445 * 153.73646 * 18 16 14 20 20 N 1.47425 * 104.94484 * 323.22341 * 19 18 16 21 21 C 1.36934 * 125.64981 * 204.03900 * 20 19 18 22 22 H 1.07998 * 120.00024 * 179.97438 * 21 20 19 23 23 C 1.38807 * 119.99800 * 359.95482 * 21 20 19 24 24 N 1.31620 * 120.00375 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99937 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47107 * 89.99999 * 25 23 21 27 27 H 1.48494 * 109.47316 * 210.00271 * 25 23 21 28 28 H 1.48499 * 109.46883 * 330.00356 * 25 23 21 29 29 C 1.47032 * 108.69983 * 24.00293 * 20 19 18 30 30 N 1.31558 * 119.03955 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.46964 * 270.01757 * 1 2 3 32 32 H 1.08998 * 109.47112 * 30.02174 * 1 2 3 33 33 H 1.09003 * 109.46753 * 150.01931 * 1 2 3 34 34 H 1.07995 * 120.42268 * 180.02562 * 4 3 2 35 35 H 1.08001 * 120.86670 * 180.25067 * 5 4 3 36 36 H 1.08997 * 109.58988 * 246.20368 * 10 9 7 37 37 H 1.09000 * 109.58774 * 6.62906 * 10 9 7 38 38 H 1.08998 * 109.63420 * 294.87190 * 11 10 9 39 39 H 1.09000 * 109.45911 * 174.74248 * 11 10 9 40 40 H 1.08998 * 109.46210 * 178.49010 * 12 11 10 41 41 H 1.09005 * 109.44827 * 58.52805 * 12 11 10 42 42 H 1.08996 * 109.49883 * 301.41433 * 13 12 11 43 43 H 1.08999 * 109.52886 * 181.32793 * 13 12 11 44 44 H 1.08995 * 111.00743 * 271.94495 * 18 16 14 45 45 H 1.09000 * 110.99996 * 35.79527 * 18 16 14 46 46 H 1.09000 * 110.41955 * 204.29541 * 19 18 16 47 47 H 1.08999 * 110.20486 * 82.04550 * 19 18 16 48 48 H 0.97002 * 120.00250 * 179.97438 * 24 23 21 49 49 H 1.08997 * 109.87808 * 239.52142 * 29 20 19 50 50 H 1.09004 * 109.87810 * 118.35643 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4684 1.1992 -0.0005 5 6 4.1861 0.0112 0.0044 6 6 3.4762 -1.1896 -0.0006 7 6 4.1924 -2.4898 -0.0001 8 8 5.3682 -2.5354 0.3021 9 7 3.5371 -3.6204 -0.3298 10 6 2.1225 -3.5777 -0.7245 11 6 1.9733 -4.2775 -2.0840 12 6 2.5573 -5.6890 -1.9913 13 6 4.0477 -5.6053 -1.6541 14 6 4.2219 -4.9198 -0.2952 15 1 3.7860 -5.5420 0.4864 16 6 5.7104 -4.7078 -0.0115 17 1 6.0949 -3.8652 -0.5863 18 6 5.9550 -4.4945 1.5058 19 6 7.4195 -4.9842 1.6543 20 7 7.5336 -6.1276 0.7307 21 6 8.4396 -7.1491 0.8333 22 1 8.4419 -7.9444 0.1027 23 6 9.3555 -7.1623 1.8763 24 7 9.3528 -6.1931 2.7668 25 14 10.5911 -8.5562 2.0168 26 1 11.8238 -8.2023 1.2682 27 1 10.9266 -8.7781 3.4462 28 1 10.0052 -9.7963 1.4475 29 6 6.5127 -5.9898 -0.3185 30 7 2.1457 -1.1502 0.0005 31 1 -0.3633 0.0003 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5136 34 1 3.9826 2.1489 -0.0001 35 1 5.2661 0.0163 0.0082 36 1 1.5189 -4.0926 0.0228 37 1 1.7977 -2.5406 -0.8082 38 1 2.5076 -3.7122 -2.8475 39 1 0.9174 -4.3371 -2.3477 40 1 2.4291 -6.1985 -2.9464 41 1 2.0390 -6.2457 -1.2105 42 1 4.5624 -5.0275 -2.4217 43 1 4.4686 -6.6098 -1.6114 44 1 5.8632 -3.4416 1.7721 45 1 5.2774 -5.1069 2.1006 46 1 7.6117 -5.3034 2.6786 47 1 8.1119 -4.1933 1.3662 48 1 9.9925 -6.2025 3.4959 49 1 5.8492 -6.8544 -0.3058 50 1 6.9925 -5.9023 -1.2933 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039241732.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:02 Heat of formation + Delta-G solvation = 87.116982 kcal Electronic energy + Delta-G solvation = -31574.890318 eV Core-core repulsion = 27604.851354 eV Total energy + Delta-G solvation = -3970.038964 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.72424 -40.34302 -37.49929 -36.84092 -34.50326 -33.59680 -32.84496 -32.62223 -30.92812 -29.04797 -28.80408 -27.16551 -26.29371 -24.59445 -24.30316 -23.66250 -22.44086 -21.22135 -19.86832 -19.65653 -19.54642 -18.00114 -17.20412 -16.69937 -16.10469 -15.93998 -15.80857 -15.31540 -14.91494 -14.68874 -14.49852 -14.38117 -13.99648 -13.69317 -13.62689 -13.36761 -13.10524 -12.91858 -12.86899 -12.76396 -12.34236 -12.06292 -11.79517 -11.56464 -11.36573 -11.22096 -11.15187 -10.90921 -10.86086 -10.77967 -10.70442 -10.59933 -10.13517 -9.93274 -9.83633 -9.76325 -9.52907 -9.33901 -9.23870 -8.71925 -8.49276 -8.32864 -6.65988 -5.50757 -2.92318 0.27259 0.55670 2.65012 2.81860 3.41041 3.46677 3.50902 3.53303 3.55102 3.69241 4.16660 4.53494 4.59741 4.66743 4.79135 4.85398 4.93569 5.03013 5.09438 5.10511 5.16694 5.30094 5.38200 5.46360 5.53109 5.56884 5.60441 5.71090 5.75805 5.82625 5.86766 5.95418 6.04878 6.09444 6.11258 6.17318 6.26727 6.34264 6.44621 6.53026 6.61492 6.65603 6.85919 7.01278 7.12944 7.31398 7.42785 7.62417 7.73446 7.83053 8.04966 8.21112 8.53315 9.36887 9.98412 10.66051 11.52073 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.002988 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.962140 B = 9367.241658 C =10650.114949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.308 3.692 3 N -0.510 5.510 4 C 0.156 3.844 5 C -0.179 4.179 6 C 0.144 3.856 7 C 0.549 3.451 8 O -0.484 6.484 9 N -0.580 5.580 10 C 0.069 3.931 11 C -0.134 4.134 12 C -0.121 4.121 13 C -0.132 4.132 14 C 0.158 3.842 15 H 0.073 0.927 16 C -0.096 4.096 17 H 0.103 0.897 18 C -0.131 4.131 19 C 0.156 3.844 20 N -0.605 5.605 21 C -0.218 4.218 22 H 0.075 0.925 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.139 3.861 30 N -0.489 5.489 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.177 0.823 35 H 0.162 0.838 36 H 0.064 0.936 37 H 0.144 0.856 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.041 0.959 46 H 0.100 0.900 47 H 0.009 0.991 48 H 0.250 0.750 49 H 0.018 0.982 50 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.008 13.287 -8.776 26.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.041 3.959 3 N -0.225 5.225 4 C -0.011 4.011 5 C -0.201 4.201 6 C -0.003 4.003 7 C 0.334 3.666 8 O -0.358 6.358 9 N -0.312 5.312 10 C -0.053 4.053 11 C -0.173 4.173 12 C -0.159 4.159 13 C -0.170 4.170 14 C 0.056 3.944 15 H 0.091 0.909 16 C -0.114 4.114 17 H 0.121 0.879 18 C -0.169 4.169 19 C 0.032 3.968 20 N -0.331 5.331 21 C -0.347 4.347 22 H 0.093 0.907 23 C -0.209 4.209 24 N -0.570 5.570 25 Si 0.743 3.257 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C 0.012 3.988 30 N -0.207 5.207 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.194 0.806 35 H 0.180 0.820 36 H 0.083 0.917 37 H 0.160 0.840 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.060 0.940 46 H 0.117 0.883 47 H 0.027 0.973 48 H 0.061 0.939 49 H 0.036 0.964 50 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -21.168 13.138 -8.467 26.313 hybrid contribution 1.598 -0.824 0.016 1.799 sum -19.569 12.314 -8.451 24.617 Atomic orbital electron populations 1.20613 0.85281 1.04355 1.04199 1.23448 0.98429 0.83417 0.90595 1.68210 1.10491 1.30326 1.13493 1.23374 0.89369 0.98748 0.89654 1.22993 1.04126 0.92842 1.00158 1.22043 0.89604 0.95494 0.93138 1.17905 0.86435 0.82507 0.79756 1.90926 1.14406 1.84589 1.45923 1.47903 1.12028 1.06211 1.65072 1.23063 0.80737 1.06486 0.95026 1.22024 1.00863 0.96634 0.97743 1.21563 0.96158 0.96610 1.01578 1.22045 0.96080 1.01836 0.97004 1.21487 0.93870 0.82161 0.96930 0.90909 1.22694 0.90764 0.98404 0.99583 0.87940 1.23350 0.99941 1.00217 0.93395 1.21892 0.89351 0.87778 0.97810 1.44544 1.36378 1.24992 1.27157 1.19079 1.07843 0.99643 1.08133 0.90729 1.24783 0.99702 0.98519 0.97933 1.69854 1.38335 1.32664 1.16169 0.86107 0.81359 0.81427 0.76829 1.21770 1.21758 1.20812 1.21430 0.90920 0.94286 0.92164 1.68215 1.08833 1.29086 1.14532 0.89347 0.89459 0.89427 0.80599 0.81996 0.91737 0.84037 0.92079 0.91159 0.91965 0.91860 0.91578 0.89894 0.90291 0.94007 0.88270 0.97329 0.93945 0.96406 0.96649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 10.32 36.01 0.37 -0.13 16 2 C 0.31 2.92 7.64 -157.29 -1.20 1.72 16 3 N -0.51 -4.98 10.32 -10.73 -0.11 -5.09 16 4 C 0.16 1.33 11.31 -17.19 -0.19 1.14 16 5 C -0.18 -1.85 9.72 -38.90 -0.38 -2.23 16 6 C 0.14 1.77 6.56 -82.64 -0.54 1.23 16 7 C 0.55 8.15 7.43 -12.06 -0.09 8.06 16 8 O -0.48 -8.64 9.46 5.38 0.05 -8.59 16 9 N -0.58 -7.97 2.97 -165.84 -0.49 -8.47 16 10 C 0.07 0.74 6.04 -3.49 -0.02 0.72 16 11 C -0.13 -1.26 6.10 -26.38 -0.16 -1.42 16 12 C -0.12 -1.25 5.88 -26.69 -0.16 -1.41 16 13 C -0.13 -1.73 4.76 -26.61 -0.13 -1.86 16 14 C 0.16 2.43 2.55 -67.60 -0.17 2.26 16 15 H 0.07 1.17 7.80 -51.93 -0.41 0.76 16 16 C -0.10 -1.86 1.90 -88.79 -0.17 -2.03 16 17 H 0.10 2.12 5.81 -52.50 -0.30 1.82 16 18 C -0.13 -2.86 5.77 -24.46 -0.14 -3.00 16 19 C 0.16 4.19 5.89 -2.41 -0.01 4.18 16 20 N -0.60 -16.66 3.40 -169.94 -0.58 -17.24 16 21 C -0.22 -6.42 10.27 -15.06 -0.15 -6.58 16 22 H 0.07 2.11 7.83 -52.49 -0.41 1.70 16 23 C -0.01 -0.42 5.49 -17.43 -0.10 -0.52 16 24 N -0.92 -28.30 10.09 55.49 0.56 -27.74 16 25 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 29 C 0.14 3.10 5.85 -3.06 -0.02 3.08 16 30 N -0.49 -5.29 6.28 -7.32 -0.05 -5.34 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.18 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.16 1.58 7.82 -52.49 -0.41 1.17 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.14 1.46 3.89 -83.45 -0.32 1.14 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.14 6.54 -51.93 -0.34 0.80 16 44 H 0.08 1.70 5.62 -51.94 -0.29 1.41 16 45 H 0.04 0.91 7.81 -51.93 -0.41 0.50 16 46 H 0.10 2.95 5.87 -51.93 -0.30 2.65 16 47 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.02 0.39 6.61 -51.93 -0.34 0.05 16 50 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -34.33 378.41 -10.95 -45.28 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.75 Total: 0.33 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -3.27 Total: 3.22 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -0.67 Total: -63.87 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.05 Total: -8.59 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.33 -10.95 -45.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039241732.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.395 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds