Wall clock time and date at job start Wed Apr 1 2020 03:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31909 * 119.03814 * 2 1 4 4 C 1.32183 * 121.02949 * 180.02562 * 3 2 1 5 5 C 1.38803 * 119.14550 * 359.74301 * 4 3 2 6 6 C 1.39496 * 118.26806 * 0.47939 * 5 4 3 7 7 C 1.48446 * 120.55560 * 179.80138 * 6 5 4 8 8 O 1.21482 * 119.99785 * 16.43586 * 7 6 5 9 9 N 1.34771 * 120.00351 * 196.16810 * 7 6 5 10 10 C 1.46924 * 120.62934 * 1.54567 * 9 7 6 11 11 C 1.53627 * 108.54336 * 126.37159 * 10 9 7 12 12 C 1.53040 * 109.24033 * 54.85551 * 11 10 9 13 13 C 1.53035 * 109.54098 * 298.51293 * 12 11 10 14 14 C 1.46924 * 120.63083 * 181.83155 * 9 7 6 15 15 H 1.09004 * 109.58747 * 113.79782 * 14 9 7 16 16 C 1.52996 * 109.59064 * 353.51120 * 14 9 7 17 17 H 1.09003 * 110.64068 * 317.48159 * 16 14 9 18 18 C 1.55162 * 110.71862 * 80.61553 * 16 14 9 19 19 C 1.55125 * 101.48445 * 153.73646 * 18 16 14 20 20 N 1.47425 * 104.94484 * 323.22341 * 19 18 16 21 21 C 1.36934 * 125.64981 * 204.03900 * 20 19 18 22 22 H 1.07998 * 120.00024 * 179.97438 * 21 20 19 23 23 C 1.38807 * 119.99800 * 359.95482 * 21 20 19 24 24 N 1.31620 * 120.00375 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99937 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47107 * 89.99999 * 25 23 21 27 27 H 1.48494 * 109.47316 * 210.00271 * 25 23 21 28 28 H 1.48499 * 109.46883 * 330.00356 * 25 23 21 29 29 C 1.47032 * 108.69983 * 24.00293 * 20 19 18 30 30 N 1.31558 * 119.03955 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.46964 * 270.01757 * 1 2 3 32 32 H 1.08998 * 109.47112 * 30.02174 * 1 2 3 33 33 H 1.09003 * 109.46753 * 150.01931 * 1 2 3 34 34 H 1.07995 * 120.42268 * 180.02562 * 4 3 2 35 35 H 1.08001 * 120.86670 * 180.25067 * 5 4 3 36 36 H 1.08997 * 109.58988 * 246.20368 * 10 9 7 37 37 H 1.09000 * 109.58774 * 6.62906 * 10 9 7 38 38 H 1.08998 * 109.63420 * 294.87190 * 11 10 9 39 39 H 1.09000 * 109.45911 * 174.74248 * 11 10 9 40 40 H 1.08998 * 109.46210 * 178.49010 * 12 11 10 41 41 H 1.09005 * 109.44827 * 58.52805 * 12 11 10 42 42 H 1.08996 * 109.49883 * 301.41433 * 13 12 11 43 43 H 1.08999 * 109.52886 * 181.32793 * 13 12 11 44 44 H 1.08995 * 111.00743 * 271.94495 * 18 16 14 45 45 H 1.09000 * 110.99996 * 35.79527 * 18 16 14 46 46 H 1.09000 * 110.41955 * 204.29541 * 19 18 16 47 47 H 1.08999 * 110.20486 * 82.04550 * 19 18 16 48 48 H 0.97002 * 120.00250 * 179.97438 * 24 23 21 49 49 H 1.08997 * 109.87808 * 239.52142 * 29 20 19 50 50 H 1.09004 * 109.87810 * 118.35643 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4684 1.1992 -0.0005 5 6 4.1861 0.0112 0.0044 6 6 3.4762 -1.1896 -0.0006 7 6 4.1924 -2.4898 -0.0001 8 8 5.3682 -2.5354 0.3021 9 7 3.5371 -3.6204 -0.3298 10 6 2.1225 -3.5777 -0.7245 11 6 1.9733 -4.2775 -2.0840 12 6 2.5573 -5.6890 -1.9913 13 6 4.0477 -5.6053 -1.6541 14 6 4.2219 -4.9198 -0.2952 15 1 3.7860 -5.5420 0.4864 16 6 5.7104 -4.7078 -0.0115 17 1 6.0949 -3.8652 -0.5863 18 6 5.9550 -4.4945 1.5058 19 6 7.4195 -4.9842 1.6543 20 7 7.5336 -6.1276 0.7307 21 6 8.4396 -7.1491 0.8333 22 1 8.4419 -7.9444 0.1027 23 6 9.3555 -7.1623 1.8763 24 7 9.3528 -6.1931 2.7668 25 14 10.5911 -8.5562 2.0168 26 1 11.8238 -8.2023 1.2682 27 1 10.9266 -8.7781 3.4462 28 1 10.0052 -9.7963 1.4475 29 6 6.5127 -5.9898 -0.3185 30 7 2.1457 -1.1502 0.0005 31 1 -0.3633 0.0003 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5136 34 1 3.9826 2.1489 -0.0001 35 1 5.2661 0.0163 0.0082 36 1 1.5189 -4.0926 0.0228 37 1 1.7977 -2.5406 -0.8082 38 1 2.5076 -3.7122 -2.8475 39 1 0.9174 -4.3371 -2.3477 40 1 2.4291 -6.1985 -2.9464 41 1 2.0390 -6.2457 -1.2105 42 1 4.5624 -5.0275 -2.4217 43 1 4.4686 -6.6098 -1.6114 44 1 5.8632 -3.4416 1.7721 45 1 5.2774 -5.1069 2.1006 46 1 7.6117 -5.3034 2.6786 47 1 8.1119 -4.1933 1.3662 48 1 9.9925 -6.2025 3.4959 49 1 5.8492 -6.8544 -0.3058 50 1 6.9925 -5.9023 -1.2933 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039241732.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:01 Heat of formation + Delta-G solvation = 66.597626 kcal Electronic energy + Delta-G solvation = -31575.780104 eV Core-core repulsion = 27604.851354 eV Total energy + Delta-G solvation = -3970.928750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.60724 -41.44165 -38.87080 -38.33259 -35.51802 -34.66503 -34.20280 -33.64477 -32.51287 -30.90205 -29.43843 -28.72289 -27.55204 -26.32894 -25.31933 -24.60811 -23.59070 -22.44325 -21.59848 -21.12112 -20.70794 -18.95368 -18.78488 -18.09136 -17.24716 -16.96805 -16.81748 -16.64749 -16.40518 -15.86552 -15.71502 -15.58094 -15.20826 -14.96410 -14.71198 -14.37783 -14.21810 -14.11062 -14.06117 -13.65787 -13.49845 -13.44895 -13.17317 -13.16903 -12.92417 -12.75002 -12.42822 -12.29041 -12.06046 -12.03006 -11.95524 -11.89529 -11.74083 -11.58731 -11.41072 -11.23871 -11.09661 -10.77642 -10.60167 -10.40367 -9.78819 -9.52717 -8.88027 -7.75809 -5.22017 -0.59186 -0.15429 1.43750 1.47404 1.56109 1.62891 1.76674 2.49392 2.61125 2.75437 3.02439 3.29710 3.34478 3.65167 3.71772 3.76953 3.84372 3.97798 4.04678 4.13328 4.19036 4.25989 4.35257 4.38405 4.45418 4.51090 4.60888 4.66458 4.71429 4.78043 4.83238 4.89287 4.90877 4.96868 5.00486 5.07163 5.11734 5.14625 5.21529 5.23500 5.30012 5.42418 5.45632 5.47398 5.55635 5.65956 5.74278 5.80656 5.82444 6.29366 6.35523 6.86076 7.07583 7.10167 7.78583 8.45675 9.25977 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.002988 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.962140 B = 9367.241658 C =10650.114949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.302 3.698 3 N -0.518 5.518 4 C 0.167 3.833 5 C -0.186 4.186 6 C 0.126 3.874 7 C 0.544 3.456 8 O -0.528 6.528 9 N -0.578 5.578 10 C 0.066 3.934 11 C -0.128 4.128 12 C -0.116 4.116 13 C -0.127 4.127 14 C 0.163 3.837 15 H 0.070 0.930 16 C -0.076 4.076 17 H 0.091 0.909 18 C -0.113 4.113 19 C 0.163 3.837 20 N -0.627 5.627 21 C -0.239 4.239 22 H 0.083 0.917 23 C -0.073 4.073 24 N -0.952 5.952 25 Si 0.986 3.014 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.266 1.266 29 C 0.136 3.864 30 N -0.492 5.492 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.213 0.787 35 H 0.161 0.839 36 H 0.072 0.928 37 H 0.151 0.849 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.042 0.958 46 H 0.067 0.933 47 H -0.027 1.027 48 H 0.246 0.754 49 H 0.032 0.968 50 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.804 13.472 -10.198 29.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 N -0.233 5.233 4 C 0.000 4.000 5 C -0.209 4.209 6 C -0.020 4.020 7 C 0.331 3.669 8 O -0.405 6.405 9 N -0.309 5.309 10 C -0.055 4.055 11 C -0.166 4.166 12 C -0.154 4.154 13 C -0.165 4.165 14 C 0.060 3.940 15 H 0.088 0.912 16 C -0.095 4.095 17 H 0.108 0.892 18 C -0.151 4.151 19 C 0.038 3.962 20 N -0.353 5.353 21 C -0.368 4.368 22 H 0.101 0.899 23 C -0.265 4.265 24 N -0.602 5.602 25 Si 0.813 3.187 26 H -0.214 1.214 27 H -0.219 1.219 28 H -0.190 1.190 29 C 0.011 3.989 30 N -0.211 5.211 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.229 0.771 35 H 0.179 0.821 36 H 0.091 0.909 37 H 0.167 0.833 38 H 0.073 0.927 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.060 0.940 46 H 0.085 0.915 47 H -0.009 1.009 48 H 0.055 0.945 49 H 0.050 0.950 50 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -24.032 13.310 -9.930 29.212 hybrid contribution 2.427 -0.779 0.443 2.587 sum -21.606 12.531 -9.486 26.717 Atomic orbital electron populations 1.20770 0.82684 1.05651 1.05166 1.24171 0.99937 0.82906 0.89397 1.68341 1.10897 1.30416 1.13666 1.23938 0.89095 0.99383 0.87620 1.23107 1.04276 0.93037 1.00447 1.21691 0.90517 0.94576 0.95250 1.18322 0.86162 0.83636 0.78798 1.90880 1.16193 1.85407 1.48064 1.48030 1.13225 1.05219 1.64467 1.23307 0.78644 1.07464 0.96061 1.22007 1.02547 0.95548 0.96512 1.21547 0.93601 0.97580 1.02645 1.21990 0.98614 1.00816 0.95128 1.21268 0.90887 0.83409 0.98403 0.91176 1.22467 0.93567 0.96241 0.97260 0.89157 1.23145 0.96305 1.00155 0.95458 1.21622 0.91805 0.86866 0.95912 1.44876 1.37200 1.24642 1.28595 1.19520 1.08519 1.00364 1.08439 0.89943 1.25747 1.01859 1.01281 0.97643 1.70129 1.38940 1.34577 1.16592 0.84972 0.78519 0.78651 0.76543 1.21384 1.21851 1.19049 1.21614 0.90308 0.96306 0.90705 1.68160 1.07925 1.29886 1.15099 0.88363 0.88259 0.88044 0.77062 0.82133 0.90949 0.83311 0.92650 0.88195 0.90264 0.91186 0.92224 0.90563 0.89937 0.93951 0.91538 1.00904 0.94454 0.94973 0.96749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.32 71.24 0.73 0.00 16 2 C 0.30 5.05 7.64 138.79 1.06 6.11 16 3 N -0.52 -8.92 10.32 -187.87 -1.94 -10.86 16 4 C 0.17 2.53 11.31 84.78 0.96 3.49 16 5 C -0.19 -3.75 9.72 22.71 0.22 -3.53 16 6 C 0.13 3.03 6.56 41.98 0.28 3.30 16 7 C 0.54 16.33 7.43 86.97 0.65 16.98 16 8 O -0.53 -19.67 9.46 -3.66 -0.03 -19.71 16 9 N -0.58 -15.50 2.97 -796.90 -2.36 -17.86 16 10 C 0.07 1.27 6.04 86.51 0.52 1.79 16 11 C -0.13 -2.00 6.10 30.82 0.19 -1.81 16 12 C -0.12 -2.06 5.88 30.62 0.18 -1.88 16 13 C -0.13 -3.19 4.76 30.67 0.15 -3.04 16 14 C 0.16 4.96 2.55 44.98 0.11 5.08 16 15 H 0.07 2.19 7.80 -2.39 -0.02 2.18 16 16 C -0.08 -3.06 1.90 -9.61 -0.02 -3.08 16 17 H 0.09 3.91 5.81 -12.12 -0.07 3.84 16 18 C -0.11 -5.14 5.77 32.06 0.18 -4.95 16 19 C 0.16 9.29 5.89 86.93 0.51 9.80 16 20 N -0.63 -35.87 3.40 -691.55 -2.35 -38.21 16 21 C -0.24 -14.43 10.27 84.03 0.86 -13.56 16 22 H 0.08 4.70 7.83 -2.91 -0.02 4.68 16 23 C -0.07 -4.44 5.49 84.86 0.47 -3.97 16 24 N -0.95 -60.98 10.09 21.65 0.22 -60.76 16 25 Si 0.99 48.03 29.55 68.60 2.03 50.05 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 28 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 29 C 0.14 6.23 5.85 86.72 0.51 6.74 16 30 N -0.49 -9.87 6.28 -177.08 -1.11 -10.98 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.21 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.16 3.21 7.82 -2.91 -0.02 3.19 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.15 2.73 3.89 -64.63 -0.25 2.47 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.08 2.00 6.54 -2.39 -0.02 1.99 16 44 H 0.08 3.75 5.62 -3.21 -0.02 3.73 16 45 H 0.04 1.89 7.81 -2.39 -0.02 1.87 16 46 H 0.07 4.22 5.87 -2.39 -0.01 4.20 16 47 H -0.03 -1.69 8.14 -2.39 -0.02 -1.71 16 48 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 49 H 0.03 1.39 6.61 -2.39 -0.02 1.38 16 50 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 Total: -1.00 -78.09 378.41 2.66 -75.43 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.64 Total: 15.44 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 7.56 Total: 17.46 kcal Atomic # 7 Polarization: -131.13 SS G_CDS: -7.54 Total: -138.68 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.03 Total: -19.71 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.05 kcal Total: -78.09 2.66 -75.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039241732.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.029 kcal (2) G-P(sol) polarization free energy of solvation -78.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds