Wall clock time and date at job start Wed Apr 1 2020 03:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47273 * 2 1 4 4 N 1.31925 * 120.17147 * 272.12435 * 3 2 1 5 5 N 1.28282 * 122.32340 * 179.97438 * 4 3 2 6 6 C 1.31919 * 122.51837 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.01532 * 180.27491 * 6 5 4 8 8 C 1.38506 * 119.96456 * 0.02562 * 6 5 4 9 9 C 1.39728 * 120.17096 * 92.09991 * 3 2 1 10 10 C 1.48132 * 121.14768 * 0.02562 * 9 3 2 11 11 O 1.21518 * 119.99992 * 308.17469 * 10 9 3 12 12 N 1.34780 * 120.00374 * 128.17165 * 10 9 3 13 13 C 1.46943 * 120.44057 * 184.55812 * 12 10 9 14 14 C 1.53599 * 108.52688 * 125.75684 * 13 12 10 15 15 H 1.09003 * 110.59512 * 172.15710 * 14 13 12 16 16 C 1.53370 * 108.68751 * 294.35737 * 14 13 12 17 17 C 1.53010 * 109.27160 * 60.29250 * 16 14 13 18 18 C 1.53008 * 109.79101 * 60.57052 * 17 16 14 19 19 C 1.53369 * 109.25943 * 299.41819 * 18 17 16 20 20 H 1.09006 * 111.08665 * 177.83142 * 19 18 17 21 21 C 1.46942 * 120.43721 * 4.28689 * 12 10 9 22 22 N 1.47572 * 107.76874 * 51.14333 * 14 13 12 23 23 C 1.36931 * 121.61285 * 120.50288 * 22 14 13 24 24 H 1.07996 * 120.00343 * 217.07069 * 23 22 14 25 25 C 1.38819 * 120.00093 * 37.06976 * 23 22 14 26 26 N 1.31618 * 119.99650 * 1.76835 * 25 23 22 27 27 Si 1.86800 * 120.00274 * 181.76641 * 25 23 22 28 28 H 1.48504 * 109.46795 * 90.00124 * 27 25 23 29 29 H 1.48495 * 109.46983 * 210.00025 * 27 25 23 30 30 H 1.48499 * 109.46731 * 330.00430 * 27 25 23 31 31 H 1.08991 * 109.47235 * 300.00107 * 1 2 3 32 32 H 1.09001 * 109.46991 * 59.99897 * 1 2 3 33 33 H 1.09004 * 109.46964 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47336 * 240.00143 * 2 1 3 35 35 H 1.09001 * 109.46991 * 120.00103 * 2 1 3 36 36 H 1.09004 * 109.47023 * 269.72482 * 7 6 5 37 37 H 1.08997 * 109.47091 * 29.72933 * 7 6 5 38 38 H 1.09007 * 109.47292 * 149.72764 * 7 6 5 39 39 H 1.08010 * 121.08530 * 180.02562 * 8 6 5 40 40 H 1.09001 * 109.62674 * 245.46572 * 13 12 10 41 41 H 1.09000 * 109.63104 * 6.04746 * 13 12 10 42 42 H 1.08992 * 109.50570 * 180.23315 * 16 14 13 43 43 H 1.09005 * 109.50219 * 300.35617 * 16 14 13 44 44 H 1.08998 * 109.41463 * 300.47462 * 17 16 14 45 45 H 1.08995 * 109.36113 * 180.63584 * 17 16 14 46 46 H 1.09000 * 109.50625 * 179.48877 * 18 17 16 47 47 H 1.09001 * 109.54570 * 59.37854 * 18 17 16 48 48 H 1.08998 * 109.63133 * 353.94899 * 21 12 10 49 49 H 1.09001 * 109.62164 * 114.52124 * 21 12 10 50 50 H 0.97003 * 120.00241 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2135 2.0600 -1.1397 5 7 2.6387 3.2694 -1.1879 6 6 2.9258 3.9638 -0.1036 7 6 3.4159 5.3836 -0.2256 8 6 2.7717 3.3890 1.1471 9 6 2.3082 2.0681 1.2072 10 6 2.1166 1.3818 2.5059 11 8 1.0576 0.8413 2.7571 12 7 3.1169 1.3566 3.4089 13 6 2.9738 0.5950 4.6573 14 6 4.1619 -0.3710 4.7786 15 1 4.1651 -0.8540 5.7558 16 6 4.0701 -1.4068 3.6512 17 6 4.1238 -0.6894 2.3008 18 6 5.4450 0.0711 2.1703 19 6 5.5419 1.1130 3.2917 20 1 6.4910 1.6473 3.2496 21 6 4.3672 2.0857 3.1553 22 7 5.3987 0.4093 4.5809 23 6 6.3669 0.4768 5.5469 24 1 6.9071 1.3982 5.7066 25 6 6.6541 -0.6391 6.3209 26 7 6.0203 -1.7719 6.1031 27 14 7.9401 -0.5332 7.6716 28 1 7.2899 -0.1264 8.9433 29 1 8.5840 -1.8597 7.8471 30 1 8.9685 0.4708 7.2982 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 4.5040 5.3881 -0.2903 37 1 2.9965 5.8368 -1.1238 38 1 3.1016 5.9529 0.6493 39 1 3.0010 3.9410 2.0466 40 1 2.9705 1.2795 5.5055 41 1 2.0425 0.0290 4.6363 42 1 4.9057 -2.1024 3.7273 43 1 3.1313 -1.9542 3.7355 44 1 3.2930 0.0126 2.2302 45 1 4.0474 -1.4233 1.4985 46 1 5.4823 0.5728 1.2033 47 1 6.2776 -0.6279 2.2500 48 1 4.3518 2.4995 2.1470 49 1 4.4758 2.8903 3.8826 50 1 6.2207 -2.5517 6.6442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039699027.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:29 Heat of formation + Delta-G solvation = 69.254465 kcal Electronic energy + Delta-G solvation = -33091.278062 eV Core-core repulsion = 29120.464522 eV Total energy + Delta-G solvation = -3970.813540 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.76154 -40.30707 -37.91197 -35.26681 -34.40238 -33.61357 -32.83289 -32.10760 -31.44257 -30.44706 -28.13131 -27.22362 -25.78612 -25.30154 -24.39196 -23.41944 -22.06965 -21.64779 -21.28923 -19.79450 -18.58372 -17.70029 -17.55419 -16.49067 -16.08691 -15.71600 -15.35270 -14.88935 -14.77194 -14.33466 -14.25309 -13.94022 -13.76161 -13.62084 -13.41596 -13.26929 -13.13596 -12.96941 -12.63951 -12.56754 -12.38469 -12.19263 -11.99193 -11.78611 -11.54747 -11.16683 -11.07582 -11.04473 -10.87180 -10.84924 -10.39516 -10.31902 -10.28763 -10.20872 -10.08706 -10.06730 -9.70041 -9.57896 -9.55840 -9.29312 -8.58325 -8.04505 -6.60878 -5.92873 -3.49776 0.38481 0.72066 2.62246 3.07121 3.27739 3.35477 3.36076 3.39782 3.78054 4.17119 4.23349 4.33630 4.37651 4.65400 4.85528 5.00585 5.08277 5.20939 5.25154 5.29257 5.35528 5.46978 5.48671 5.51430 5.54002 5.59560 5.73669 5.75317 5.77508 5.79733 5.90292 5.96128 6.01287 6.03116 6.16930 6.17519 6.29570 6.34279 6.36096 6.39983 6.51037 6.60938 6.75181 6.84222 6.97436 7.02416 7.42154 7.52965 7.62092 7.68111 8.20035 8.33866 8.58194 9.05070 9.61938 10.28202 11.12810 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.003956 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.394385 B = 7076.207767 C = 7882.625067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 C 0.113 3.887 4 N -0.237 5.237 5 N -0.232 5.232 6 C 0.058 3.942 7 C -0.099 4.099 8 C -0.088 4.088 9 C -0.109 4.109 10 C 0.560 3.440 11 O -0.529 6.529 12 N -0.575 5.575 13 C 0.091 3.909 14 C 0.179 3.821 15 H 0.121 0.879 16 C -0.112 4.112 17 C -0.140 4.140 18 C -0.122 4.122 19 C 0.152 3.848 20 H 0.080 0.920 21 C 0.083 3.917 22 N -0.577 5.577 23 C -0.258 4.258 24 H 0.064 0.936 25 C 0.016 3.984 26 N -0.896 5.896 27 Si 0.904 3.096 28 H -0.287 1.287 29 H -0.290 1.290 30 H -0.279 1.279 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.156 0.844 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.033 0.967 46 H 0.035 0.965 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.087 9.084 -9.047 14.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.032 4.032 4 N -0.078 5.078 5 N -0.075 5.075 6 C -0.086 4.086 7 C -0.157 4.157 8 C -0.118 4.118 9 C -0.124 4.124 10 C 0.347 3.653 11 O -0.407 6.407 12 N -0.307 5.307 13 C -0.032 4.032 14 C 0.072 3.928 15 H 0.138 0.862 16 C -0.151 4.151 17 C -0.178 4.178 18 C -0.161 4.161 19 C 0.044 3.956 20 H 0.098 0.902 21 C -0.041 4.041 22 N -0.298 5.298 23 C -0.388 4.388 24 H 0.082 0.918 25 C -0.184 4.184 26 N -0.538 5.538 27 Si 0.733 3.267 28 H -0.213 1.213 29 H -0.216 1.216 30 H -0.204 1.204 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.173 0.827 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.092 0.908 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.658 8.591 -10.414 15.053 hybrid contribution 1.014 -0.001 2.221 2.441 sum -5.644 8.591 -8.194 13.145 Atomic orbital electron populations 1.21696 0.93120 1.02544 1.02592 1.20579 0.97561 0.88846 1.04367 1.22951 0.93073 0.98562 0.88592 1.72989 1.09133 1.01803 1.23917 1.72804 1.06886 1.00727 1.27109 1.22809 0.96968 0.98884 0.89952 1.20679 1.02186 0.88766 1.04077 1.22524 0.95120 0.94265 0.99842 1.21204 0.99515 0.95598 0.96045 1.17666 0.84235 0.80438 0.83004 1.90779 1.25685 1.46238 1.78035 1.48131 1.14547 1.48564 1.19430 1.22706 1.01940 0.95398 0.83178 1.21204 0.82505 0.89102 0.99973 0.86207 1.21789 1.00464 0.98723 0.94100 1.22174 0.98529 0.99227 0.97854 1.21939 0.98361 0.99085 0.96761 1.21141 0.94678 0.92052 0.87755 0.90190 1.22618 0.85406 0.95769 1.00311 1.44279 1.17411 1.56995 1.11119 1.19061 1.13743 0.94730 1.11251 0.91831 1.25333 0.97950 0.94903 1.00205 1.69838 1.42519 1.00830 1.40654 0.86288 0.81656 0.77001 0.81720 1.21349 1.21587 1.20416 0.91080 0.92823 0.91729 0.89614 0.89119 0.89596 0.89849 0.90183 0.82685 0.91749 0.89920 0.90651 0.94419 0.90832 0.94871 0.94652 0.91967 0.91002 0.91082 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.76 37.16 0.36 -1.44 16 2 C -0.07 -1.04 5.57 -27.88 -0.16 -1.19 16 3 C 0.11 1.68 6.16 -82.00 -0.50 1.17 16 4 N -0.24 -3.64 11.42 33.81 0.39 -3.25 16 5 N -0.23 -3.32 11.41 33.57 0.38 -2.93 16 6 C 0.06 0.67 6.86 -82.46 -0.57 0.11 16 7 C -0.10 -0.74 10.19 36.00 0.37 -0.37 16 8 C -0.09 -1.05 7.25 -38.78 -0.28 -1.34 16 9 C -0.11 -1.59 4.82 -104.58 -0.50 -2.09 16 10 C 0.56 9.15 4.02 -12.20 -0.05 9.10 16 11 O -0.53 -9.73 13.96 5.35 0.07 -9.66 16 12 N -0.58 -9.50 1.66 -173.54 -0.29 -9.79 16 13 C 0.09 1.67 5.88 -3.49 -0.02 1.64 16 14 C 0.18 3.80 2.61 -66.84 -0.17 3.62 16 15 H 0.12 2.92 6.05 -51.93 -0.31 2.60 16 16 C -0.11 -2.30 5.51 -26.53 -0.15 -2.45 16 17 C -0.14 -2.57 4.98 -26.72 -0.13 -2.70 16 18 C -0.12 -2.23 5.57 -26.54 -0.15 -2.38 16 19 C 0.15 2.80 3.62 -67.09 -0.24 2.55 16 20 H 0.08 1.45 8.01 -51.93 -0.42 1.03 16 21 C 0.08 1.28 4.94 -3.74 -0.02 1.26 16 22 N -0.58 -12.65 2.51 -155.69 -0.39 -13.04 16 23 C -0.26 -6.34 9.69 -15.06 -0.15 -6.48 16 24 H 0.06 1.54 7.83 -52.49 -0.41 1.13 16 25 C 0.02 0.41 5.26 -17.43 -0.09 0.31 16 26 N -0.90 -23.44 10.48 55.49 0.58 -22.86 16 27 Si 0.90 20.15 29.55 -169.99 -5.02 15.13 16 28 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 30 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 31 H 0.07 1.02 6.76 -51.93 -0.35 0.67 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.38 5.28 -51.93 -0.27 1.11 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.44 8.09 -51.92 -0.42 0.02 16 39 H 0.16 1.49 7.26 -52.48 -0.38 1.11 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.53 7.01 -51.93 -0.36 1.16 16 42 H 0.07 1.78 7.74 -51.93 -0.40 1.38 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.28 1.43 -52.44 -0.08 1.21 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.07 0.96 4.53 -51.93 -0.24 0.73 16 49 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 372.89 15.07 5.62 5.62 Total: -1.00 -28.18 372.89 -8.54 -36.71 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -7.43 Total: 4.74 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.45 Total: -0.67 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.67 Total: -51.88 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.07 Total: -9.66 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.18 -8.54 -36.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039699027.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.968 kcal (2) G-P(sol) polarization free energy of solvation -28.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds