Wall clock time and date at job start Wed Apr 1 2020 03:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47273 * 2 1 4 4 N 1.31925 * 120.17147 * 272.12435 * 3 2 1 5 5 N 1.28282 * 122.32340 * 179.97438 * 4 3 2 6 6 C 1.31919 * 122.51837 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.01532 * 180.27491 * 6 5 4 8 8 C 1.38506 * 119.96456 * 0.02562 * 6 5 4 9 9 C 1.39728 * 120.17096 * 92.09991 * 3 2 1 10 10 C 1.48132 * 121.14768 * 0.02562 * 9 3 2 11 11 O 1.21518 * 119.99992 * 308.17469 * 10 9 3 12 12 N 1.34780 * 120.00374 * 128.17165 * 10 9 3 13 13 C 1.46943 * 120.44057 * 184.55812 * 12 10 9 14 14 C 1.53599 * 108.52688 * 125.75684 * 13 12 10 15 15 H 1.09003 * 110.59512 * 172.15710 * 14 13 12 16 16 C 1.53370 * 108.68751 * 294.35737 * 14 13 12 17 17 C 1.53010 * 109.27160 * 60.29250 * 16 14 13 18 18 C 1.53008 * 109.79101 * 60.57052 * 17 16 14 19 19 C 1.53369 * 109.25943 * 299.41819 * 18 17 16 20 20 H 1.09006 * 111.08665 * 177.83142 * 19 18 17 21 21 C 1.46942 * 120.43721 * 4.28689 * 12 10 9 22 22 N 1.47572 * 107.76874 * 51.14333 * 14 13 12 23 23 C 1.36931 * 121.61285 * 120.50288 * 22 14 13 24 24 H 1.07996 * 120.00343 * 217.07069 * 23 22 14 25 25 C 1.38819 * 120.00093 * 37.06976 * 23 22 14 26 26 N 1.31618 * 119.99650 * 1.76835 * 25 23 22 27 27 Si 1.86800 * 120.00274 * 181.76641 * 25 23 22 28 28 H 1.48504 * 109.46795 * 90.00124 * 27 25 23 29 29 H 1.48495 * 109.46983 * 210.00025 * 27 25 23 30 30 H 1.48499 * 109.46731 * 330.00430 * 27 25 23 31 31 H 1.08991 * 109.47235 * 300.00107 * 1 2 3 32 32 H 1.09001 * 109.46991 * 59.99897 * 1 2 3 33 33 H 1.09004 * 109.46964 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47336 * 240.00143 * 2 1 3 35 35 H 1.09001 * 109.46991 * 120.00103 * 2 1 3 36 36 H 1.09004 * 109.47023 * 269.72482 * 7 6 5 37 37 H 1.08997 * 109.47091 * 29.72933 * 7 6 5 38 38 H 1.09007 * 109.47292 * 149.72764 * 7 6 5 39 39 H 1.08010 * 121.08530 * 180.02562 * 8 6 5 40 40 H 1.09001 * 109.62674 * 245.46572 * 13 12 10 41 41 H 1.09000 * 109.63104 * 6.04746 * 13 12 10 42 42 H 1.08992 * 109.50570 * 180.23315 * 16 14 13 43 43 H 1.09005 * 109.50219 * 300.35617 * 16 14 13 44 44 H 1.08998 * 109.41463 * 300.47462 * 17 16 14 45 45 H 1.08995 * 109.36113 * 180.63584 * 17 16 14 46 46 H 1.09000 * 109.50625 * 179.48877 * 18 17 16 47 47 H 1.09001 * 109.54570 * 59.37854 * 18 17 16 48 48 H 1.08998 * 109.63133 * 353.94899 * 21 12 10 49 49 H 1.09001 * 109.62164 * 114.52124 * 21 12 10 50 50 H 0.97003 * 120.00241 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2135 2.0600 -1.1397 5 7 2.6387 3.2694 -1.1879 6 6 2.9258 3.9638 -0.1036 7 6 3.4159 5.3836 -0.2256 8 6 2.7717 3.3890 1.1471 9 6 2.3082 2.0681 1.2072 10 6 2.1166 1.3818 2.5059 11 8 1.0576 0.8413 2.7571 12 7 3.1169 1.3566 3.4089 13 6 2.9738 0.5950 4.6573 14 6 4.1619 -0.3710 4.7786 15 1 4.1651 -0.8540 5.7558 16 6 4.0701 -1.4068 3.6512 17 6 4.1238 -0.6894 2.3008 18 6 5.4450 0.0711 2.1703 19 6 5.5419 1.1130 3.2917 20 1 6.4910 1.6473 3.2496 21 6 4.3672 2.0857 3.1553 22 7 5.3987 0.4093 4.5809 23 6 6.3669 0.4768 5.5469 24 1 6.9071 1.3982 5.7066 25 6 6.6541 -0.6391 6.3209 26 7 6.0203 -1.7719 6.1031 27 14 7.9401 -0.5332 7.6716 28 1 7.2899 -0.1264 8.9433 29 1 8.5840 -1.8597 7.8471 30 1 8.9685 0.4708 7.2982 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 4.5040 5.3881 -0.2903 37 1 2.9965 5.8368 -1.1238 38 1 3.1016 5.9529 0.6493 39 1 3.0010 3.9410 2.0466 40 1 2.9705 1.2795 5.5055 41 1 2.0425 0.0290 4.6363 42 1 4.9057 -2.1024 3.7273 43 1 3.1313 -1.9542 3.7355 44 1 3.2930 0.0126 2.2302 45 1 4.0474 -1.4233 1.4985 46 1 5.4823 0.5728 1.2033 47 1 6.2776 -0.6279 2.2500 48 1 4.3518 2.4995 2.1470 49 1 4.4758 2.8903 3.8826 50 1 6.2207 -2.5517 6.6442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039699027.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:28 Heat of formation + Delta-G solvation = 54.676372 kcal Electronic energy + Delta-G solvation = -33091.910216 eV Core-core repulsion = 29120.464522 eV Total energy + Delta-G solvation = -3971.445694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.92996 -41.57482 -39.34551 -36.30190 -35.81624 -34.82520 -34.42334 -33.51216 -32.61046 -32.10650 -29.04658 -28.66883 -27.23167 -26.50269 -25.63639 -24.84254 -23.20411 -23.16294 -22.76998 -21.08360 -20.13646 -19.00763 -18.76707 -17.94411 -17.17281 -16.98187 -16.63424 -16.60578 -16.05942 -15.74877 -15.39511 -15.27629 -15.11134 -14.76434 -14.71447 -14.58722 -14.45895 -14.15377 -13.99473 -13.69905 -13.49531 -13.26754 -13.18387 -13.12238 -12.90393 -12.83196 -12.72255 -12.49144 -12.19662 -12.05986 -12.01022 -11.88792 -11.81987 -11.68766 -11.48706 -11.29458 -11.16537 -11.06339 -10.57176 -10.54749 -10.43634 -9.51963 -8.36612 -7.80935 -5.39874 -0.66607 -0.24846 1.35811 1.49301 1.52082 1.58471 1.79377 2.35330 2.51750 2.82566 3.06095 3.22915 3.34268 3.40855 3.48649 3.71869 3.96518 4.06318 4.09895 4.10671 4.18962 4.23893 4.25596 4.29869 4.32846 4.41628 4.53091 4.58392 4.66347 4.70568 4.80107 4.81851 4.82781 4.85209 4.89018 4.95344 4.97540 5.00877 5.07424 5.15867 5.20581 5.27756 5.30577 5.33573 5.37728 5.48256 5.69146 5.71356 5.85606 6.28655 6.48155 6.89138 7.19418 7.57044 7.81930 8.45092 9.21059 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.003956 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.394385 B = 7076.207767 C = 7882.625067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 C 0.104 3.896 4 N -0.256 5.256 5 N -0.254 5.254 6 C 0.066 3.934 7 C -0.099 4.099 8 C -0.076 4.076 9 C -0.127 4.127 10 C 0.565 3.435 11 O -0.552 6.552 12 N -0.577 5.577 13 C 0.104 3.896 14 C 0.180 3.820 15 H 0.084 0.916 16 C -0.105 4.105 17 C -0.135 4.135 18 C -0.116 4.116 19 C 0.146 3.854 20 H 0.087 0.913 21 C 0.092 3.908 22 N -0.590 5.590 23 C -0.259 4.259 24 H 0.069 0.931 25 C -0.033 4.033 26 N -0.921 5.921 27 Si 0.960 3.040 28 H -0.287 1.287 29 H -0.302 1.302 30 H -0.270 1.270 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.186 0.814 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.089 0.911 45 H 0.036 0.964 46 H 0.060 0.940 47 H 0.033 0.967 48 H 0.099 0.901 49 H 0.089 0.911 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.966 12.218 -10.124 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 C -0.041 4.041 4 N -0.097 5.097 5 N -0.096 5.096 6 C -0.078 4.078 7 C -0.157 4.157 8 C -0.106 4.106 9 C -0.141 4.141 10 C 0.353 3.647 11 O -0.431 6.431 12 N -0.308 5.308 13 C -0.020 4.020 14 C 0.073 3.927 15 H 0.102 0.898 16 C -0.144 4.144 17 C -0.173 4.173 18 C -0.155 4.155 19 C 0.038 3.962 20 H 0.105 0.895 21 C -0.031 4.031 22 N -0.312 5.312 23 C -0.389 4.389 24 H 0.086 0.914 25 C -0.230 4.230 26 N -0.566 5.566 27 Si 0.789 3.211 28 H -0.214 1.214 29 H -0.229 1.229 30 H -0.195 1.195 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.204 0.796 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.107 0.893 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.052 0.948 48 H 0.117 0.883 49 H 0.107 0.893 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.535 11.759 -11.530 17.718 hybrid contribution 0.968 -0.915 2.504 2.837 sum -5.567 10.844 -9.026 15.167 Atomic orbital electron populations 1.21634 0.92504 1.03236 1.01909 1.20569 0.98115 0.88783 1.03923 1.23004 0.93504 0.98852 0.88778 1.72962 1.10008 1.02608 1.24133 1.72755 1.07615 1.00606 1.28609 1.23435 0.95192 1.00222 0.88987 1.20881 1.03100 0.86107 1.05587 1.22905 0.93336 0.93086 1.01256 1.21065 1.01521 0.96896 0.94611 1.17886 0.83615 0.79886 0.83298 1.90775 1.26672 1.47108 1.78522 1.48089 1.15256 1.48579 1.18845 1.22335 1.00135 0.95017 0.84466 1.20967 0.83754 0.89727 0.98237 0.89834 1.21652 0.98783 0.98226 0.95703 1.22159 0.99365 0.99491 0.96295 1.21864 0.96946 0.98639 0.98090 1.21349 0.96633 0.92346 0.85831 0.89500 1.22610 0.83119 0.94922 1.02479 1.44416 1.17208 1.57342 1.12265 1.19351 1.13495 0.94607 1.11490 0.91384 1.25943 0.99737 0.94912 1.02432 1.70020 1.43848 1.01158 1.41546 0.85397 0.79834 0.76278 0.79576 1.21433 1.22868 1.19483 0.92875 0.92203 0.90420 0.88677 0.90789 0.87933 0.89479 0.87551 0.79650 0.91370 0.90260 0.94416 0.94410 0.89316 0.94540 0.92154 0.94783 0.88281 0.89286 0.94288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.76 71.98 0.70 -2.64 16 2 C -0.07 -2.01 5.57 29.85 0.17 -1.85 16 3 C 0.10 2.92 6.16 42.91 0.26 3.18 16 4 N -0.26 -7.41 11.42 -46.95 -0.54 -7.94 16 5 N -0.25 -6.58 11.41 -47.70 -0.54 -7.12 16 6 C 0.07 1.28 6.86 42.61 0.29 1.58 16 7 C -0.10 -1.00 10.19 71.23 0.73 -0.27 16 8 C -0.08 -1.51 7.25 22.79 0.17 -1.35 16 9 C -0.13 -3.36 4.82 -19.84 -0.10 -3.46 16 10 C 0.56 17.39 4.02 86.87 0.35 17.74 16 11 O -0.55 -19.78 13.96 -3.77 -0.05 -19.83 16 12 N -0.58 -17.88 1.66 -821.24 -1.36 -19.24 16 13 C 0.10 3.78 5.88 86.50 0.51 4.28 16 14 C 0.18 7.80 2.61 45.11 0.12 7.92 16 15 H 0.08 4.26 6.05 -2.39 -0.01 4.25 16 16 C -0.10 -4.45 5.51 30.72 0.17 -4.28 16 17 C -0.14 -4.93 4.98 30.60 0.15 -4.77 16 18 C -0.12 -4.11 5.57 30.72 0.17 -3.94 16 19 C 0.15 5.09 3.62 44.95 0.16 5.25 16 20 H 0.09 2.93 8.01 -2.38 -0.02 2.91 16 21 C 0.09 2.51 4.94 86.34 0.43 2.94 16 22 N -0.59 -25.77 2.51 -646.49 -1.62 -27.40 16 23 C -0.26 -12.69 9.69 84.04 0.81 -11.88 16 24 H 0.07 3.22 7.83 -2.91 -0.02 3.20 16 25 C -0.03 -1.70 5.26 84.86 0.45 -1.26 16 26 N -0.92 -50.16 10.48 21.65 0.23 -49.94 16 27 Si 0.96 42.00 29.55 68.60 2.03 44.03 16 28 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 29 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 30 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 31 H 0.05 1.50 6.76 -2.39 -0.02 1.49 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.07 2.22 5.28 -2.39 -0.01 2.21 16 36 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.11 0.57 8.09 -2.38 -0.02 0.55 16 39 H 0.19 2.50 7.26 -2.91 -0.02 2.48 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.08 2.93 7.01 -2.39 -0.02 2.91 16 42 H 0.04 1.87 7.74 -2.39 -0.02 1.85 16 43 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.09 3.01 1.43 -3.40 0.00 3.00 16 45 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.10 2.19 4.53 -2.39 -0.01 2.18 16 49 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 Total: -1.00 -63.12 372.89 4.63 -58.49 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.96 Total: 21.77 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 5.54 Total: 7.19 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -3.84 Total: -111.64 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.83 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -63.12 4.63 -58.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039699027.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.166 kcal (2) G-P(sol) polarization free energy of solvation -63.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds