Wall clock time and date at job start Wed Apr 1 2020 03:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.47006 * 2 1 4 4 N 1.31929 * 120.16854 * 85.04703 * 3 2 1 5 5 N 1.28272 * 122.32761 * 179.97438 * 4 3 2 6 6 C 1.31921 * 122.51335 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00954 * 179.97438 * 6 5 4 8 8 C 1.38499 * 119.97214 * 0.25303 * 6 5 4 9 9 C 1.39725 * 120.17880 * 265.02448 * 3 2 1 10 10 C 1.48140 * 121.14036 * 0.02562 * 9 3 2 11 11 O 1.21511 * 120.00274 * 35.04934 * 10 9 3 12 12 N 1.34777 * 119.99472 * 215.04824 * 10 9 3 13 13 C 1.47570 * 125.68045 * 5.08193 * 12 10 9 14 14 C 1.55444 * 104.91271 * 156.09472 * 13 12 10 15 15 C 1.53494 * 101.29686 * 35.63353 * 14 13 12 16 16 C 1.53470 * 111.82067 * 204.13121 * 15 14 13 17 17 C 1.54632 * 102.74510 * 272.84241 * 16 15 14 18 18 N 1.47153 * 107.34118 * 339.33671 * 17 16 15 19 19 C 1.36938 * 125.59614 * 179.06197 * 18 17 16 20 20 H 1.08008 * 119.99440 * 179.97438 * 19 18 17 21 21 C 1.38807 * 120.00511 * 359.97438 * 19 18 17 22 22 N 1.31621 * 119.99652 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00337 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47289 * 60.00009 * 23 21 19 25 25 H 1.48503 * 109.47375 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47349 * 299.99840 * 23 21 19 27 27 C 1.47753 * 108.80475 * 359.08594 * 18 17 16 28 28 C 1.47455 * 125.67082 * 185.39100 * 12 10 9 29 29 H 1.09004 * 109.47403 * 59.99488 * 1 2 3 30 30 H 1.09005 * 109.47210 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47392 * 299.99974 * 1 2 3 32 32 H 1.09000 * 109.47237 * 240.00797 * 2 1 3 33 33 H 1.08996 * 109.47082 * 120.00397 * 2 1 3 34 34 H 1.09000 * 109.47522 * 90.00677 * 7 6 5 35 35 H 1.08998 * 109.47502 * 329.99401 * 7 6 5 36 36 H 1.09012 * 109.46563 * 209.99724 * 7 6 5 37 37 H 1.07990 * 121.08962 * 179.72267 * 8 6 5 38 38 H 1.09002 * 110.32818 * 275.07704 * 13 12 10 39 39 H 1.08998 * 110.33112 * 37.30288 * 13 12 10 40 40 H 1.09005 * 111.23785 * 277.56944 * 14 13 12 41 41 H 1.08995 * 110.96846 * 153.57938 * 14 13 12 42 42 H 1.09000 * 110.75355 * 31.15385 * 16 15 14 43 43 H 1.08997 * 110.75390 * 154.34355 * 16 15 14 44 44 H 1.08997 * 109.86726 * 98.77561 * 17 16 15 45 45 H 1.08992 * 109.86816 * 219.75815 * 17 16 15 46 46 H 0.96999 * 120.00339 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.39970 * 263.54988 * 27 18 17 48 48 H 1.08996 * 110.40298 * 141.14045 * 27 18 17 49 49 H 1.08996 * 109.99717 * 301.53504 * 28 12 10 50 50 H 1.09001 * 109.99166 * 62.82859 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.1604 2.0788 1.1363 5 7 2.5842 3.2885 1.1845 6 6 2.9236 3.9645 0.1037 7 6 3.4142 5.3842 0.2258 8 6 2.8234 3.3709 -1.1436 9 6 2.3652 2.0482 -1.2033 10 6 2.2339 1.3405 -2.4981 11 8 1.3267 0.5506 -2.6696 12 7 3.1209 1.5729 -3.4859 13 6 4.3245 2.4202 -3.3802 14 6 5.2837 1.8919 -4.4834 15 6 4.2901 1.5175 -5.5918 16 6 4.8642 0.4535 -6.5371 17 6 5.6237 1.3013 -7.5838 18 7 5.0709 2.6639 -7.5292 19 6 5.4873 3.7241 -8.2895 20 1 5.0154 4.6889 -8.1751 21 6 6.5157 3.5588 -9.2070 22 7 7.0910 2.3832 -9.3459 23 14 7.0831 5.0048 -10.2445 24 1 7.5664 6.0921 -9.3560 25 1 8.1861 4.5699 -11.1386 26 1 5.9485 5.5021 -11.0632 27 6 3.9932 2.7006 -6.5191 28 6 3.0467 1.0278 -4.8540 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.4977 5.3853 0.3447 35 1 2.9528 5.8548 1.0939 36 1 3.1470 5.9395 -0.6735 37 1 3.0921 3.9090 -2.0405 38 1 4.0700 3.4640 -3.5642 39 1 4.7811 2.3085 -2.3968 40 1 5.8358 1.0168 -4.1407 41 1 5.9643 2.6755 -4.8164 42 1 5.5487 -0.2071 -6.0049 43 1 4.0639 -0.1186 -7.0063 44 1 6.6864 1.3226 -7.3427 45 1 5.4780 0.8797 -8.5783 46 1 7.8099 2.2677 -9.9868 47 1 3.0211 2.5749 -6.9959 48 1 4.0260 3.6371 -5.9623 49 1 3.0376 -0.0617 -4.8212 50 1 2.1487 1.3930 -5.3524 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041422792.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:20 Heat of formation + Delta-G solvation = 49.823547 kcal Electronic energy + Delta-G solvation = -30870.661411 eV Core-core repulsion = 26899.005283 eV Total energy + Delta-G solvation = -3971.656128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.73026 -40.26382 -38.62293 -36.04112 -35.21554 -34.03658 -32.84761 -31.85051 -30.39574 -29.58995 -28.57609 -28.17255 -26.14436 -25.52546 -24.61642 -23.34594 -22.93751 -22.12158 -20.34127 -19.88873 -19.00656 -18.05436 -17.31973 -16.69506 -16.52052 -16.17784 -15.57393 -15.49417 -14.87081 -14.65265 -14.34613 -14.25174 -13.97486 -13.93674 -13.84256 -13.38839 -13.19840 -12.92775 -12.71741 -12.59221 -12.57873 -12.51863 -12.07766 -12.00806 -11.67830 -11.40099 -11.31914 -11.17004 -11.09342 -10.97096 -10.82825 -10.61873 -10.46198 -10.29464 -10.11968 -10.04201 -9.87120 -9.80603 -9.77087 -9.70203 -8.80481 -8.66588 -6.91575 -5.78377 -3.12352 0.08888 0.52005 2.40995 2.63453 3.19983 3.34888 3.39803 3.40956 3.58344 3.89343 4.01429 4.13844 4.37533 4.43043 4.56413 4.67872 4.75747 4.86421 4.92946 5.00535 5.14527 5.15664 5.18692 5.25627 5.29544 5.33908 5.34853 5.45707 5.59327 5.61234 5.65105 5.70100 5.76391 5.78736 5.84492 5.86550 5.97771 6.02534 6.12626 6.12721 6.16934 6.25481 6.40667 6.49236 6.59089 6.69878 7.24111 7.47907 7.54200 7.75252 7.80942 8.17718 8.37443 9.14386 9.74381 10.39880 11.33002 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.002684 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.093104 B =10431.132658 C =11605.076447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 C 0.114 3.886 4 N -0.238 5.238 5 N -0.228 5.228 6 C 0.060 3.940 7 C -0.101 4.101 8 C -0.085 4.085 9 C -0.118 4.118 10 C 0.574 3.426 11 O -0.518 6.518 12 N -0.605 5.605 13 C 0.093 3.907 14 C -0.109 4.109 15 C -0.085 4.085 16 C -0.130 4.130 17 C 0.180 3.820 18 N -0.604 5.604 19 C -0.231 4.231 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.151 3.849 28 C 0.126 3.874 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.159 0.841 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.043 0.957 46 H 0.253 0.747 47 H 0.021 0.979 48 H 0.039 0.961 49 H 0.074 0.926 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 -0.674 17.632 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.031 4.031 4 N -0.079 5.079 5 N -0.071 5.071 6 C -0.084 4.084 7 C -0.159 4.159 8 C -0.115 4.115 9 C -0.132 4.132 10 C 0.361 3.639 11 O -0.395 6.395 12 N -0.338 5.338 13 C -0.030 4.030 14 C -0.147 4.147 15 C -0.086 4.086 16 C -0.169 4.169 17 C 0.055 3.945 18 N -0.330 5.330 19 C -0.359 4.359 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.025 3.975 28 C 0.004 3.996 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.177 0.823 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.038 0.962 48 H 0.057 0.943 49 H 0.092 0.908 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.743 -1.090 19.060 20.601 hybrid contribution 0.578 0.883 -2.244 2.480 sum -7.165 -0.207 16.816 18.280 Atomic orbital electron populations 1.21623 0.93085 1.02505 1.02285 1.20550 0.97667 0.88626 1.04169 1.23048 0.92642 0.98748 0.88627 1.73029 1.09703 1.01375 1.23820 1.72828 1.06114 1.01073 1.27099 1.22887 0.96610 0.99029 0.89919 1.20715 1.02262 0.88643 1.04312 1.22760 0.94471 0.94156 1.00067 1.21078 1.00993 0.95620 0.95505 1.17506 0.82021 0.82128 0.82267 1.90796 1.32985 1.34775 1.80960 1.48599 1.24651 1.48599 1.11960 1.22770 0.85241 0.94660 1.00306 1.22589 0.96678 1.02258 0.93171 1.21605 0.93426 0.98561 0.95046 1.22714 0.99775 0.96776 0.97640 1.21201 0.95561 0.82924 0.94796 1.44545 1.38203 1.07383 1.42884 1.18981 1.13965 0.88937 1.13990 0.90558 1.24788 0.98778 0.97036 0.99665 1.69943 1.27208 1.21320 1.38375 0.86215 0.78092 0.81478 0.80048 1.21175 1.21596 1.21182 1.21316 0.92317 0.94226 0.89638 1.21899 0.98955 0.98984 0.79757 0.91635 0.91683 0.92766 0.88878 0.89818 0.89480 0.89715 0.89944 0.82328 0.90732 0.90927 0.90697 0.88424 0.91803 0.92060 0.93464 0.93899 0.93655 0.96172 0.94321 0.90788 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.69 37.16 0.36 -1.06 16 2 C -0.07 -0.78 5.52 -27.88 -0.15 -0.93 16 3 C 0.11 1.40 6.16 -81.99 -0.50 0.90 16 4 N -0.24 -3.14 11.42 33.81 0.39 -2.76 16 5 N -0.23 -2.85 11.41 33.57 0.38 -2.46 16 6 C 0.06 0.59 6.86 -82.46 -0.57 0.03 16 7 C -0.10 -0.64 10.19 36.01 0.37 -0.27 16 8 C -0.09 -0.83 8.03 -38.78 -0.31 -1.15 16 9 C -0.12 -1.39 5.47 -104.57 -0.57 -1.96 16 10 C 0.57 7.54 7.05 -12.19 -0.09 7.46 16 11 O -0.52 -7.93 13.98 5.36 0.07 -7.85 16 12 N -0.60 -7.51 3.34 -171.74 -0.57 -8.08 16 13 C 0.09 1.00 5.17 -2.16 -0.01 0.99 16 14 C -0.11 -1.43 5.99 -25.18 -0.15 -1.58 16 15 C -0.08 -1.27 0.61 -154.07 -0.09 -1.37 16 16 C -0.13 -2.17 5.85 -25.63 -0.15 -2.32 16 17 C 0.18 4.03 5.35 -2.83 -0.02 4.01 16 18 N -0.60 -14.17 3.41 -170.56 -0.58 -14.75 16 19 C -0.23 -6.05 10.28 -15.06 -0.15 -6.20 16 20 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 22 N -0.92 -25.91 10.30 55.49 0.57 -25.34 16 23 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.15 2.79 6.10 -3.24 -0.02 2.77 16 28 C 0.13 1.70 6.14 -3.70 -0.02 1.67 16 29 H 0.06 0.78 7.21 -51.93 -0.37 0.41 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.09 6.10 -51.93 -0.32 0.77 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.39 8.09 -51.92 -0.42 -0.03 16 37 H 0.16 1.23 5.81 -52.49 -0.31 0.93 16 38 H 0.07 0.72 6.94 -51.93 -0.36 0.36 16 39 H 0.07 0.68 7.25 -51.93 -0.38 0.31 16 40 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 41 H 0.10 1.45 8.00 -51.93 -0.42 1.03 16 42 H 0.06 0.96 7.80 -51.93 -0.40 0.56 16 43 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 44 H 0.05 1.17 7.38 -51.93 -0.38 0.79 16 45 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 46 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.02 0.39 7.79 -51.93 -0.40 -0.02 16 48 H 0.04 0.68 7.96 -51.93 -0.41 0.27 16 49 H 0.07 0.99 7.88 -51.93 -0.41 0.58 16 50 H 0.07 1.03 7.62 -51.93 -0.40 0.63 16 LS Contribution 390.77 15.07 5.89 5.89 Total: -1.00 -30.99 390.77 -8.91 -39.90 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.85 Total: -1.47 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -2.18 Total: 0.70 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.19 Total: -53.39 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.07 Total: -7.85 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.99 -8.91 -39.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041422792.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.727 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds