Wall clock time and date at job start Wed Apr 1 2020 03:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.47006 * 2 1 4 4 N 1.31929 * 120.16854 * 85.04703 * 3 2 1 5 5 N 1.28272 * 122.32761 * 179.97438 * 4 3 2 6 6 C 1.31921 * 122.51335 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00954 * 179.97438 * 6 5 4 8 8 C 1.38499 * 119.97214 * 0.25303 * 6 5 4 9 9 C 1.39725 * 120.17880 * 265.02448 * 3 2 1 10 10 C 1.48140 * 121.14036 * 0.02562 * 9 3 2 11 11 O 1.21511 * 120.00274 * 35.04934 * 10 9 3 12 12 N 1.34777 * 119.99472 * 215.04824 * 10 9 3 13 13 C 1.47570 * 125.68045 * 5.08193 * 12 10 9 14 14 C 1.55444 * 104.91271 * 156.09472 * 13 12 10 15 15 C 1.53494 * 101.29686 * 35.63353 * 14 13 12 16 16 C 1.53470 * 111.82067 * 204.13121 * 15 14 13 17 17 C 1.54632 * 102.74510 * 272.84241 * 16 15 14 18 18 N 1.47153 * 107.34118 * 339.33671 * 17 16 15 19 19 C 1.36938 * 125.59614 * 179.06197 * 18 17 16 20 20 H 1.08008 * 119.99440 * 179.97438 * 19 18 17 21 21 C 1.38807 * 120.00511 * 359.97438 * 19 18 17 22 22 N 1.31621 * 119.99652 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00337 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47289 * 60.00009 * 23 21 19 25 25 H 1.48503 * 109.47375 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47349 * 299.99840 * 23 21 19 27 27 C 1.47753 * 108.80475 * 359.08594 * 18 17 16 28 28 C 1.47455 * 125.67082 * 185.39100 * 12 10 9 29 29 H 1.09004 * 109.47403 * 59.99488 * 1 2 3 30 30 H 1.09005 * 109.47210 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47392 * 299.99974 * 1 2 3 32 32 H 1.09000 * 109.47237 * 240.00797 * 2 1 3 33 33 H 1.08996 * 109.47082 * 120.00397 * 2 1 3 34 34 H 1.09000 * 109.47522 * 90.00677 * 7 6 5 35 35 H 1.08998 * 109.47502 * 329.99401 * 7 6 5 36 36 H 1.09012 * 109.46563 * 209.99724 * 7 6 5 37 37 H 1.07990 * 121.08962 * 179.72267 * 8 6 5 38 38 H 1.09002 * 110.32818 * 275.07704 * 13 12 10 39 39 H 1.08998 * 110.33112 * 37.30288 * 13 12 10 40 40 H 1.09005 * 111.23785 * 277.56944 * 14 13 12 41 41 H 1.08995 * 110.96846 * 153.57938 * 14 13 12 42 42 H 1.09000 * 110.75355 * 31.15385 * 16 15 14 43 43 H 1.08997 * 110.75390 * 154.34355 * 16 15 14 44 44 H 1.08997 * 109.86726 * 98.77561 * 17 16 15 45 45 H 1.08992 * 109.86816 * 219.75815 * 17 16 15 46 46 H 0.96999 * 120.00339 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.39970 * 263.54988 * 27 18 17 48 48 H 1.08996 * 110.40298 * 141.14045 * 27 18 17 49 49 H 1.08996 * 109.99717 * 301.53504 * 28 12 10 50 50 H 1.09001 * 109.99166 * 62.82859 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.1604 2.0788 1.1363 5 7 2.5842 3.2885 1.1845 6 6 2.9236 3.9645 0.1037 7 6 3.4142 5.3842 0.2258 8 6 2.8234 3.3709 -1.1436 9 6 2.3652 2.0482 -1.2033 10 6 2.2339 1.3405 -2.4981 11 8 1.3267 0.5506 -2.6696 12 7 3.1209 1.5729 -3.4859 13 6 4.3245 2.4202 -3.3802 14 6 5.2837 1.8919 -4.4834 15 6 4.2901 1.5175 -5.5918 16 6 4.8642 0.4535 -6.5371 17 6 5.6237 1.3013 -7.5838 18 7 5.0709 2.6639 -7.5292 19 6 5.4873 3.7241 -8.2895 20 1 5.0154 4.6889 -8.1751 21 6 6.5157 3.5588 -9.2070 22 7 7.0910 2.3832 -9.3459 23 14 7.0831 5.0048 -10.2445 24 1 7.5664 6.0921 -9.3560 25 1 8.1861 4.5699 -11.1386 26 1 5.9485 5.5021 -11.0632 27 6 3.9932 2.7006 -6.5191 28 6 3.0467 1.0278 -4.8540 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.4977 5.3853 0.3447 35 1 2.9528 5.8548 1.0939 36 1 3.1470 5.9395 -0.6735 37 1 3.0921 3.9090 -2.0405 38 1 4.0700 3.4640 -3.5642 39 1 4.7811 2.3085 -2.3968 40 1 5.8358 1.0168 -4.1407 41 1 5.9643 2.6755 -4.8164 42 1 5.5487 -0.2071 -6.0049 43 1 4.0639 -0.1186 -7.0063 44 1 6.6864 1.3226 -7.3427 45 1 5.4780 0.8797 -8.5783 46 1 7.8099 2.2677 -9.9868 47 1 3.0211 2.5749 -6.9959 48 1 4.0260 3.6371 -5.9623 49 1 3.0376 -0.0617 -4.8212 50 1 2.1487 1.3930 -5.3524 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041422792.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:19 Heat of formation + Delta-G solvation = 31.566457 kcal Electronic energy + Delta-G solvation = -30871.453098 eV Core-core repulsion = 26899.005283 eV Total energy + Delta-G solvation = -3972.447815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.60621 -41.35950 -39.81034 -37.35914 -36.09067 -35.02187 -34.34837 -32.81544 -31.80912 -30.90015 -29.89823 -28.94176 -27.52232 -26.66968 -25.73869 -24.57080 -23.97034 -22.98626 -22.09159 -20.83728 -20.26127 -18.91779 -18.84594 -18.03063 -17.46782 -17.07562 -16.73467 -16.49828 -16.39488 -15.91614 -15.67493 -15.37892 -15.14217 -14.89288 -14.67374 -14.48363 -14.07047 -13.98257 -13.86353 -13.81282 -13.74635 -13.26724 -13.22055 -13.04461 -12.94180 -12.84604 -12.76820 -12.57683 -12.45312 -12.05940 -12.02173 -11.94337 -11.76871 -11.60737 -11.47896 -11.45909 -11.36325 -11.19554 -10.66473 -10.65289 -10.59295 -9.80492 -8.85507 -7.81388 -5.16053 -0.76817 -0.27453 1.44551 1.48681 1.50698 1.56854 1.64691 2.35162 2.52000 2.80456 3.01039 3.20427 3.33810 3.37640 3.48365 3.52290 3.64817 3.69332 3.90444 3.95595 4.14992 4.18818 4.21108 4.25548 4.32135 4.34891 4.50541 4.52827 4.61490 4.67612 4.71503 4.76870 4.77276 4.84251 4.87435 4.92736 4.97485 4.98985 5.03562 5.05138 5.17472 5.20104 5.23105 5.28868 5.31543 5.36451 5.49812 5.70911 5.82513 6.22805 6.25912 6.81614 7.14078 7.53455 7.81559 8.45636 9.28522 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.002684 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.093104 B =10431.132658 C =11605.076447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.070 4.070 3 C 0.105 3.895 4 N -0.261 5.261 5 N -0.253 5.253 6 C 0.064 3.936 7 C -0.101 4.101 8 C -0.073 4.073 9 C -0.129 4.129 10 C 0.577 3.423 11 O -0.544 6.544 12 N -0.603 5.603 13 C 0.098 3.902 14 C -0.106 4.106 15 C -0.072 4.072 16 C -0.117 4.117 17 C 0.189 3.811 18 N -0.623 5.623 19 C -0.237 4.237 20 H 0.083 0.917 21 C -0.065 4.065 22 N -0.951 5.951 23 Si 0.973 3.027 24 H -0.274 1.274 25 H -0.299 1.299 26 H -0.281 1.281 27 C 0.149 3.851 28 C 0.134 3.866 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.184 0.816 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.015 0.985 45 H 0.001 0.999 46 H 0.245 0.755 47 H 0.019 0.981 48 H 0.051 0.949 49 H 0.078 0.922 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 0.700 19.119 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 C -0.040 4.040 4 N -0.101 5.101 5 N -0.096 5.096 6 C -0.081 4.081 7 C -0.159 4.159 8 C -0.102 4.102 9 C -0.143 4.143 10 C 0.365 3.635 11 O -0.423 6.423 12 N -0.335 5.335 13 C -0.024 4.024 14 C -0.144 4.144 15 C -0.074 4.074 16 C -0.156 4.156 17 C 0.064 3.936 18 N -0.349 5.349 19 C -0.366 4.366 20 H 0.101 0.899 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.802 3.198 24 H -0.200 1.200 25 H -0.225 1.225 26 H -0.207 1.207 27 C 0.024 3.976 28 C 0.012 3.988 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.201 0.799 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.033 0.967 45 H 0.019 0.981 46 H 0.054 0.946 47 H 0.037 0.963 48 H 0.070 0.930 49 H 0.096 0.904 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.124 0.303 20.591 22.138 hybrid contribution 0.664 0.501 -2.714 2.839 sum -7.460 0.804 17.876 19.387 Atomic orbital electron populations 1.21566 0.92851 1.03150 1.01334 1.20549 0.97827 0.88290 1.04198 1.23191 0.92866 0.99209 0.88746 1.72982 1.10702 1.02045 1.24375 1.72765 1.07085 1.01139 1.28582 1.23427 0.95259 1.00196 0.89251 1.20880 1.03051 0.86416 1.05528 1.23042 0.92970 0.93243 1.00974 1.21011 1.02207 0.96548 0.94573 1.17627 0.81572 0.81747 0.82544 1.90788 1.34080 1.35957 1.81436 1.48555 1.24983 1.48665 1.11302 1.22856 0.83993 0.95084 1.00454 1.22532 0.96472 1.02287 0.93133 1.21410 0.94823 0.96300 0.94827 1.22569 0.99822 0.96663 0.96535 1.20920 0.94727 0.83567 0.94424 1.44816 1.39305 1.07131 1.43665 1.19389 1.13440 0.89993 1.13787 0.89875 1.25572 0.99537 0.99335 1.01339 1.70169 1.27678 1.23131 1.39030 0.85230 0.77256 0.78872 0.78446 1.20016 1.22516 1.20703 1.21477 0.90572 0.96354 0.89183 1.21692 0.97685 0.99229 0.80230 0.93430 0.90281 0.92696 0.89727 0.88759 0.87974 0.89575 0.87759 0.79871 0.88892 0.88854 0.89725 0.90088 0.89787 0.91133 0.96694 0.98110 0.94575 0.96333 0.93039 0.90351 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.69 71.98 0.70 -1.94 16 2 C -0.07 -1.47 5.52 29.85 0.16 -1.30 16 3 C 0.11 2.47 6.16 42.90 0.26 2.73 16 4 N -0.26 -6.62 11.42 -46.95 -0.54 -7.15 16 5 N -0.25 -5.93 11.41 -47.70 -0.54 -6.48 16 6 C 0.06 1.08 6.86 42.61 0.29 1.38 16 7 C -0.10 -0.92 10.19 71.24 0.73 -0.19 16 8 C -0.07 -1.20 8.03 22.79 0.18 -1.01 16 9 C -0.13 -2.79 5.47 -19.83 -0.11 -2.90 16 10 C 0.58 13.96 7.05 86.87 0.61 14.57 16 11 O -0.54 -15.97 13.98 -3.75 -0.05 -16.02 16 12 N -0.60 -13.22 3.34 -815.57 -2.73 -15.95 16 13 C 0.10 1.75 5.17 87.02 0.45 2.20 16 14 C -0.11 -2.52 5.99 31.60 0.19 -2.33 16 15 C -0.07 -2.02 0.61 -51.90 -0.03 -2.06 16 16 C -0.12 -3.80 5.85 31.31 0.18 -3.62 16 17 C 0.19 8.66 5.35 86.81 0.46 9.13 16 18 N -0.62 -29.35 3.41 -693.52 -2.36 -31.71 16 19 C -0.24 -12.47 10.28 84.03 0.86 -11.61 16 20 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 21 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 22 N -0.95 -55.28 10.30 21.65 0.22 -55.05 16 23 Si 0.97 44.00 29.55 68.60 2.03 46.03 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 27 C 0.15 5.28 6.10 86.21 0.53 5.80 16 28 C 0.13 3.29 6.14 86.08 0.53 3.81 16 29 H 0.05 1.12 7.21 -2.39 -0.02 1.10 16 30 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.92 6.10 -2.39 -0.01 1.90 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 0.52 8.09 -2.38 -0.02 0.50 16 37 H 0.18 2.00 5.81 -2.92 -0.02 1.99 16 38 H 0.09 1.37 6.94 -2.39 -0.02 1.35 16 39 H 0.09 1.36 7.25 -2.39 -0.02 1.34 16 40 H 0.08 1.87 7.85 -2.38 -0.02 1.85 16 41 H 0.08 2.25 8.00 -2.39 -0.02 2.23 16 42 H 0.08 2.40 7.80 -2.39 -0.02 2.38 16 43 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 44 H 0.01 0.77 7.38 -2.39 -0.02 0.75 16 45 H 0.00 0.03 7.50 -2.39 -0.02 0.02 16 46 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 47 H 0.02 0.68 7.79 -2.39 -0.02 0.66 16 48 H 0.05 1.70 7.96 -2.39 -0.02 1.68 16 49 H 0.08 1.91 7.88 -2.39 -0.02 1.89 16 50 H 0.07 1.84 7.62 -2.39 -0.02 1.82 16 Total: -1.00 -69.55 390.77 3.44 -66.11 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.94 Total: 10.64 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 6.47 Total: 9.60 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -5.95 Total: -116.35 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.05 Total: -16.02 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -69.55 3.44 -66.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041422792.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.672 kcal (2) G-P(sol) polarization free energy of solvation -69.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds