Wall clock time and date at job start Wed Apr 1 2020 03:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47325 * 2 1 4 4 C 1.38551 * 120.01782 * 125.25780 * 3 2 1 5 5 C 1.40074 * 117.81807 * 180.24291 * 4 3 2 6 6 C 1.48138 * 121.14612 * 179.78829 * 5 4 3 7 7 O 1.21511 * 119.99703 * 143.75022 * 6 5 4 8 8 N 1.34774 * 119.99556 * 323.74519 * 6 5 4 9 9 C 1.47560 * 125.67890 * 354.81978 * 8 6 5 10 10 C 1.55190 * 105.01018 * 203.84494 * 9 8 6 11 11 C 1.53720 * 101.43694 * 324.53312 * 10 9 8 12 12 C 1.53655 * 111.46682 * 154.97540 * 11 10 9 13 13 C 1.55182 * 101.41794 * 155.06030 * 12 11 10 14 14 N 1.47563 * 105.00640 * 324.49672 * 13 12 11 15 15 C 1.36935 * 125.67855 * 203.86339 * 14 13 12 16 16 H 1.07998 * 120.00169 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99491 * 359.97438 * 15 14 13 18 18 N 1.31615 * 120.00117 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99762 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46792 * 60.00217 * 19 17 15 21 21 H 1.48498 * 109.47197 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47107 * 300.00455 * 19 17 15 23 23 C 1.47406 * 108.64997 * 23.85935 * 14 13 12 24 24 C 1.47406 * 125.67242 * 174.79879 * 8 6 5 25 25 C 1.39769 * 117.70701 * 359.50473 * 5 4 3 26 26 C 1.50692 * 120.17429 * 180.27764 * 25 5 4 27 27 N 1.31893 * 119.65203 * 0.25836 * 25 5 4 28 28 N 1.28272 * 122.33764 * 359.97438 * 27 25 5 29 29 H 1.08999 * 109.47404 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47407 * 300.00427 * 1 2 3 31 31 H 1.09003 * 109.46832 * 60.00030 * 1 2 3 32 32 H 1.08994 * 109.47144 * 239.99282 * 2 1 3 33 33 H 1.09003 * 109.46832 * 119.99970 * 2 1 3 34 34 H 1.07999 * 121.08656 * 0.02562 * 4 3 2 35 35 H 1.09008 * 110.33223 * 322.72256 * 9 8 6 36 36 H 1.08997 * 110.33437 * 84.85592 * 9 8 6 37 37 H 1.08998 * 111.03579 * 82.54271 * 10 9 8 38 38 H 1.08993 * 111.03574 * 206.43415 * 10 9 8 39 39 H 1.09004 * 111.03081 * 273.09010 * 12 11 10 40 40 H 1.08994 * 111.04104 * 37.02190 * 12 11 10 41 41 H 1.08997 * 110.33434 * 205.61466 * 13 12 11 42 42 H 1.09002 * 110.42674 * 83.42528 * 13 12 11 43 43 H 0.97003 * 119.99663 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.98802 * 238.55405 * 23 14 13 45 45 H 1.08999 * 109.98964 * 117.24337 * 23 14 13 46 46 H 1.08995 * 109.98302 * 297.25248 * 24 8 6 47 47 H 1.09002 * 109.98673 * 58.51203 * 24 8 6 48 48 H 1.08998 * 109.47752 * 84.47704 * 26 25 5 49 49 H 1.09001 * 109.47528 * 204.48138 * 26 25 5 50 50 H 1.09001 * 109.46987 * 324.47632 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9163 1.8434 0.9796 5 6 3.3496 3.1748 0.9387 6 6 4.2907 3.7057 1.9522 7 8 5.1379 4.5148 1.6296 8 7 4.2070 3.2914 3.2319 9 6 3.1663 2.4016 3.7821 10 6 3.1307 2.7162 5.3013 11 6 4.6148 2.9937 5.5901 12 6 4.7887 3.9018 6.8173 13 6 6.2159 3.5135 7.2870 14 7 6.3289 2.0683 7.0111 15 6 7.1778 1.1987 7.6422 16 1 7.1848 0.1547 7.3660 17 6 8.0302 1.6595 8.6363 18 7 8.0220 2.9319 8.9725 19 14 9.1888 0.4734 9.4968 20 1 10.1008 -0.1399 8.4980 21 1 9.9867 1.2087 10.5106 22 1 8.3995 -0.5917 10.1661 23 6 5.3759 1.7163 5.9431 24 6 5.1401 3.6513 4.3147 25 6 2.8683 3.9835 -0.0947 26 6 3.3031 5.4228 -0.1954 27 7 2.0317 3.4801 -0.9814 28 7 1.6351 2.2611 -0.9358 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2573 1.1693 1.7515 35 1 2.2005 2.6217 3.3270 36 1 3.4337 1.3581 3.6160 37 1 2.5219 3.5972 5.5043 38 1 2.7744 1.8576 5.8704 39 1 4.7424 4.9537 6.5352 40 1 4.0484 3.6708 7.5831 41 1 6.3287 3.7053 8.3540 42 1 6.9661 4.0668 6.7220 43 1 8.6174 3.2538 9.6674 44 1 4.6815 0.9553 6.2992 45 1 5.9144 1.3500 5.0690 46 1 6.1380 3.2771 4.0863 47 1 5.1678 4.7340 4.4382 48 1 4.2537 5.4790 -0.7257 49 1 2.5496 5.9928 -0.7389 50 1 3.4204 5.8377 0.8057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041505449.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:24 Heat of formation + Delta-G solvation = 50.424989 kcal Electronic energy + Delta-G solvation = -30704.347436 eV Core-core repulsion = 26732.717389 eV Total energy + Delta-G solvation = -3971.630048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.72124 -40.28067 -38.57517 -35.99617 -35.46463 -33.94791 -32.84064 -31.86771 -30.68004 -29.50925 -28.43023 -27.94473 -26.53720 -25.48385 -24.32442 -23.69038 -22.53631 -22.52662 -20.37359 -19.85567 -18.99127 -17.95592 -17.33416 -16.72828 -16.48303 -16.18790 -15.60989 -15.56046 -14.93795 -14.83237 -14.51170 -14.40904 -13.99865 -13.75743 -13.58012 -13.44129 -13.26154 -12.94700 -12.70193 -12.62167 -12.46630 -12.27851 -12.18376 -12.09811 -11.59902 -11.58935 -11.54925 -11.38307 -11.13564 -10.98502 -10.84369 -10.62209 -10.46781 -10.34033 -10.13643 -10.02428 -9.87059 -9.79660 -9.75313 -9.57344 -8.80434 -8.68198 -6.90471 -5.70939 -3.12914 0.08669 0.50992 2.42433 2.64668 3.19680 3.36549 3.41080 3.42380 3.56215 3.86297 4.02886 4.10522 4.34302 4.40953 4.50186 4.61461 4.73649 4.76313 4.83923 4.86698 5.09294 5.14964 5.16447 5.23098 5.27910 5.31060 5.41678 5.44337 5.49043 5.58962 5.63849 5.66201 5.69194 5.76306 5.81492 5.87026 5.90671 5.97488 6.03316 6.06544 6.13404 6.23576 6.44140 6.50499 6.61932 6.70503 7.26289 7.44416 7.55361 7.79043 7.83450 8.29452 8.36355 9.15698 9.76411 10.40793 11.32973 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.002572 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.097595 B =10883.260244 C =11698.638022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C 0.061 3.939 4 C -0.083 4.083 5 C -0.119 4.119 6 C 0.574 3.426 7 O -0.519 6.519 8 N -0.606 5.606 9 C 0.093 3.907 10 C -0.117 4.117 11 C -0.082 4.082 12 C -0.130 4.130 13 C 0.151 3.849 14 N -0.603 5.603 15 C -0.225 4.225 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.152 3.848 24 C 0.129 3.871 25 C 0.112 3.888 26 C -0.098 4.098 27 N -0.241 5.241 28 N -0.223 5.223 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.158 0.842 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.013 0.987 43 H 0.253 0.747 44 H 0.028 0.972 45 H 0.021 0.979 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.093 0.907 49 H 0.080 0.920 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.667 -1.495 -14.538 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.084 4.084 4 C -0.112 4.112 5 C -0.133 4.133 6 C 0.360 3.640 7 O -0.395 6.395 8 N -0.339 5.339 9 C -0.029 4.029 10 C -0.155 4.155 11 C -0.083 4.083 12 C -0.169 4.169 13 C 0.027 3.973 14 N -0.330 5.330 15 C -0.354 4.354 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.745 3.255 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.026 3.974 24 C 0.007 3.993 25 C -0.032 4.032 26 C -0.157 4.157 27 N -0.083 5.083 28 N -0.066 5.066 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.176 0.824 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.124 0.876 42 H 0.031 0.969 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.039 0.961 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.111 0.889 49 H 0.099 0.901 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.929 -0.764 -15.970 22.569 hybrid contribution 1.599 -0.986 1.691 2.528 sum -14.330 -1.750 -14.279 20.305 Atomic orbital electron populations 1.21711 0.93519 1.02306 1.02883 1.20474 0.97453 0.88796 1.04008 1.22869 0.94684 0.98754 0.92061 1.22746 0.94268 0.95381 0.98814 1.21098 0.99077 0.95300 0.97866 1.17499 0.83942 0.81686 0.80828 1.90822 1.36574 1.32644 1.79454 1.48599 1.29057 1.48303 1.07931 1.22649 0.90807 0.94086 0.95370 1.22696 0.96624 1.02785 0.93368 1.21579 0.94067 0.98126 0.94559 1.22881 1.01770 0.97074 0.95193 1.22004 0.88748 0.83456 1.03112 1.44615 1.43031 1.05273 1.40056 1.19006 1.12599 0.90300 1.13452 0.90576 1.24783 0.99870 0.96332 0.99516 1.69781 1.40970 1.12512 1.33714 0.86161 0.80533 0.79700 0.79138 1.21208 1.21535 1.21145 1.21144 0.91700 0.92686 0.91911 1.21971 0.92766 1.00256 0.84264 1.23051 0.91855 0.98747 0.89577 1.20748 1.02513 0.88001 1.04397 1.73060 1.09076 1.05491 1.20637 1.72742 1.17443 0.97455 1.18943 0.91743 0.92684 0.91400 0.89253 0.89657 0.82444 0.90927 0.90830 0.90402 0.89171 0.91975 0.91440 0.87606 0.96867 0.93611 0.95411 0.96102 0.90386 0.90781 0.88881 0.90084 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.78 37.16 0.36 -0.55 16 2 C -0.07 -0.45 6.35 -27.88 -0.18 -0.62 16 3 C 0.06 0.59 6.25 -82.45 -0.52 0.08 16 4 C -0.08 -0.81 8.00 -38.78 -0.31 -1.12 16 5 C -0.12 -1.43 5.44 -104.57 -0.57 -2.00 16 6 C 0.57 7.98 7.03 -12.20 -0.09 7.89 16 7 O -0.52 -8.70 15.35 5.36 0.08 -8.62 16 8 N -0.61 -7.88 3.34 -171.86 -0.57 -8.45 16 9 C 0.09 0.94 5.23 -2.30 -0.01 0.92 16 10 C -0.12 -1.30 6.04 -25.20 -0.15 -1.46 16 11 C -0.08 -1.25 0.60 -153.99 -0.09 -1.34 16 12 C -0.13 -2.22 6.04 -25.24 -0.15 -2.37 16 13 C 0.15 3.47 5.85 -2.31 -0.01 3.46 16 14 N -0.60 -14.62 3.41 -170.40 -0.58 -15.20 16 15 C -0.23 -6.06 10.28 -15.06 -0.15 -6.21 16 16 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 18 N -0.92 -26.18 10.10 55.49 0.56 -25.62 16 19 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 C 0.15 2.86 6.40 -3.64 -0.02 2.83 16 24 C 0.13 1.96 6.03 -3.65 -0.02 1.94 16 25 C 0.11 1.38 6.90 -82.00 -0.57 0.81 16 26 C -0.10 -1.05 8.91 36.00 0.32 -0.73 16 27 N -0.24 -3.13 11.42 33.81 0.39 -2.75 16 28 N -0.22 -2.71 11.04 33.58 0.37 -2.34 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.50 7.96 -51.93 -0.41 0.09 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.40 7.92 -51.93 -0.41 -0.01 16 34 H 0.16 1.20 5.85 -52.49 -0.31 0.89 16 35 H 0.07 0.61 7.29 -51.92 -0.38 0.23 16 36 H 0.07 0.64 6.96 -51.93 -0.36 0.28 16 37 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 38 H 0.09 0.94 7.62 -51.93 -0.40 0.54 16 39 H 0.06 0.95 7.62 -51.93 -0.40 0.56 16 40 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 41 H 0.11 2.76 5.89 -51.93 -0.31 2.46 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.03 0.51 7.53 -51.93 -0.39 0.12 16 45 H 0.02 0.41 7.61 -51.93 -0.39 0.01 16 46 H 0.08 1.37 7.61 -51.93 -0.39 0.97 16 47 H 0.07 1.15 7.53 -51.93 -0.39 0.76 16 48 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.08 0.94 6.83 -51.93 -0.35 0.59 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -31.87 391.50 -8.95 -40.82 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.82 Total: -1.47 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.26 Total: 1.18 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.16 Total: -54.37 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.08 Total: -8.62 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.87 -8.95 -40.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041505449.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.246 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds