Wall clock time and date at job start Wed Apr 1 2020 03:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47325 * 2 1 4 4 C 1.38551 * 120.01782 * 125.25780 * 3 2 1 5 5 C 1.40074 * 117.81807 * 180.24291 * 4 3 2 6 6 C 1.48138 * 121.14612 * 179.78829 * 5 4 3 7 7 O 1.21511 * 119.99703 * 143.75022 * 6 5 4 8 8 N 1.34774 * 119.99556 * 323.74519 * 6 5 4 9 9 C 1.47560 * 125.67890 * 354.81978 * 8 6 5 10 10 C 1.55190 * 105.01018 * 203.84494 * 9 8 6 11 11 C 1.53720 * 101.43694 * 324.53312 * 10 9 8 12 12 C 1.53655 * 111.46682 * 154.97540 * 11 10 9 13 13 C 1.55182 * 101.41794 * 155.06030 * 12 11 10 14 14 N 1.47563 * 105.00640 * 324.49672 * 13 12 11 15 15 C 1.36935 * 125.67855 * 203.86339 * 14 13 12 16 16 H 1.07998 * 120.00169 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99491 * 359.97438 * 15 14 13 18 18 N 1.31615 * 120.00117 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99762 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46792 * 60.00217 * 19 17 15 21 21 H 1.48498 * 109.47197 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47107 * 300.00455 * 19 17 15 23 23 C 1.47406 * 108.64997 * 23.85935 * 14 13 12 24 24 C 1.47406 * 125.67242 * 174.79879 * 8 6 5 25 25 C 1.39769 * 117.70701 * 359.50473 * 5 4 3 26 26 C 1.50692 * 120.17429 * 180.27764 * 25 5 4 27 27 N 1.31893 * 119.65203 * 0.25836 * 25 5 4 28 28 N 1.28272 * 122.33764 * 359.97438 * 27 25 5 29 29 H 1.08999 * 109.47404 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47407 * 300.00427 * 1 2 3 31 31 H 1.09003 * 109.46832 * 60.00030 * 1 2 3 32 32 H 1.08994 * 109.47144 * 239.99282 * 2 1 3 33 33 H 1.09003 * 109.46832 * 119.99970 * 2 1 3 34 34 H 1.07999 * 121.08656 * 0.02562 * 4 3 2 35 35 H 1.09008 * 110.33223 * 322.72256 * 9 8 6 36 36 H 1.08997 * 110.33437 * 84.85592 * 9 8 6 37 37 H 1.08998 * 111.03579 * 82.54271 * 10 9 8 38 38 H 1.08993 * 111.03574 * 206.43415 * 10 9 8 39 39 H 1.09004 * 111.03081 * 273.09010 * 12 11 10 40 40 H 1.08994 * 111.04104 * 37.02190 * 12 11 10 41 41 H 1.08997 * 110.33434 * 205.61466 * 13 12 11 42 42 H 1.09002 * 110.42674 * 83.42528 * 13 12 11 43 43 H 0.97003 * 119.99663 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.98802 * 238.55405 * 23 14 13 45 45 H 1.08999 * 109.98964 * 117.24337 * 23 14 13 46 46 H 1.08995 * 109.98302 * 297.25248 * 24 8 6 47 47 H 1.09002 * 109.98673 * 58.51203 * 24 8 6 48 48 H 1.08998 * 109.47752 * 84.47704 * 26 25 5 49 49 H 1.09001 * 109.47528 * 204.48138 * 26 25 5 50 50 H 1.09001 * 109.46987 * 324.47632 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9163 1.8434 0.9796 5 6 3.3496 3.1748 0.9387 6 6 4.2907 3.7057 1.9522 7 8 5.1379 4.5148 1.6296 8 7 4.2070 3.2914 3.2319 9 6 3.1663 2.4016 3.7821 10 6 3.1307 2.7162 5.3013 11 6 4.6148 2.9937 5.5901 12 6 4.7887 3.9018 6.8173 13 6 6.2159 3.5135 7.2870 14 7 6.3289 2.0683 7.0111 15 6 7.1778 1.1987 7.6422 16 1 7.1848 0.1547 7.3660 17 6 8.0302 1.6595 8.6363 18 7 8.0220 2.9319 8.9725 19 14 9.1888 0.4734 9.4968 20 1 10.1008 -0.1399 8.4980 21 1 9.9867 1.2087 10.5106 22 1 8.3995 -0.5917 10.1661 23 6 5.3759 1.7163 5.9431 24 6 5.1401 3.6513 4.3147 25 6 2.8683 3.9835 -0.0947 26 6 3.3031 5.4228 -0.1954 27 7 2.0317 3.4801 -0.9814 28 7 1.6351 2.2611 -0.9358 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2573 1.1693 1.7515 35 1 2.2005 2.6217 3.3270 36 1 3.4337 1.3581 3.6160 37 1 2.5219 3.5972 5.5043 38 1 2.7744 1.8576 5.8704 39 1 4.7424 4.9537 6.5352 40 1 4.0484 3.6708 7.5831 41 1 6.3287 3.7053 8.3540 42 1 6.9661 4.0668 6.7220 43 1 8.6174 3.2538 9.6674 44 1 4.6815 0.9553 6.2992 45 1 5.9144 1.3500 5.0690 46 1 6.1380 3.2771 4.0863 47 1 5.1678 4.7340 4.4382 48 1 4.2537 5.4790 -0.7257 49 1 2.5496 5.9928 -0.7389 50 1 3.4204 5.8377 0.8057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041505449.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:23 Heat of formation + Delta-G solvation = 31.022166 kcal Electronic energy + Delta-G solvation = -30705.188806 eV Core-core repulsion = 26732.717389 eV Total energy + Delta-G solvation = -3972.471417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.60946 -41.39238 -39.81093 -37.35543 -36.22528 -35.00225 -34.34891 -32.72314 -32.02029 -30.94848 -29.60673 -28.92201 -27.74842 -26.93231 -25.51620 -24.54859 -23.68834 -23.28109 -22.12408 -20.82395 -20.25884 -18.89480 -18.81744 -18.09072 -17.53626 -17.02438 -16.78314 -16.55824 -16.44223 -15.94665 -15.60636 -15.52714 -15.08980 -14.87240 -14.75979 -14.52266 -14.07270 -13.98714 -13.96863 -13.87237 -13.41388 -13.33810 -13.18841 -13.14865 -12.98854 -12.80873 -12.71444 -12.63059 -12.47409 -12.12238 -12.06368 -11.88090 -11.78875 -11.62082 -11.53125 -11.44849 -11.34761 -11.16300 -10.71591 -10.68807 -10.59445 -9.85065 -8.86511 -7.76025 -5.19720 -0.78543 -0.29429 1.40638 1.47180 1.49706 1.56006 1.61041 2.33390 2.50432 2.79243 2.98676 3.20328 3.29465 3.34278 3.47677 3.52086 3.62946 3.70770 3.83701 3.94956 4.11338 4.16389 4.20622 4.30023 4.39653 4.41280 4.50560 4.54444 4.58248 4.62189 4.67566 4.68741 4.73908 4.84171 4.89561 4.94213 4.99831 5.04158 5.04814 5.09705 5.14536 5.18592 5.21298 5.24257 5.34172 5.45795 5.48232 5.65254 5.84191 6.24574 6.32726 6.77452 7.12163 7.51977 7.80340 8.43868 9.25665 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.002572 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.097595 B =10883.260244 C =11698.638022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C 0.066 3.934 4 C -0.067 4.067 5 C -0.130 4.130 6 C 0.575 3.425 7 O -0.557 6.557 8 N -0.602 5.602 9 C 0.090 3.910 10 C -0.106 4.106 11 C -0.072 4.072 12 C -0.114 4.114 13 C 0.153 3.847 14 N -0.627 5.627 15 C -0.236 4.236 16 H 0.082 0.918 17 C -0.068 4.068 18 N -0.950 5.950 19 Si 0.977 3.023 20 H -0.282 1.282 21 H -0.296 1.296 22 H -0.274 1.274 23 C 0.150 3.850 24 C 0.135 3.865 25 C 0.103 3.897 26 C -0.094 4.094 27 N -0.262 5.262 28 N -0.244 5.244 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.185 0.815 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.070 0.930 42 H -0.021 1.021 43 H 0.246 0.754 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.047 0.953 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.118 -3.799 -14.931 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.079 4.079 4 C -0.096 4.096 5 C -0.145 4.145 6 C 0.363 3.637 7 O -0.436 6.436 8 N -0.335 5.335 9 C -0.031 4.031 10 C -0.144 4.144 11 C -0.073 4.073 12 C -0.153 4.153 13 C 0.028 3.972 14 N -0.353 5.353 15 C -0.365 4.365 16 H 0.100 0.900 17 C -0.260 4.260 18 N -0.600 5.600 19 Si 0.805 3.195 20 H -0.208 1.208 21 H -0.223 1.223 22 H -0.199 1.199 23 C 0.025 3.975 24 C 0.012 3.988 25 C -0.042 4.042 26 C -0.153 4.153 27 N -0.104 5.104 28 N -0.086 5.086 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.132 0.868 34 H 0.203 0.797 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.088 0.912 42 H -0.003 1.003 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.034 0.966 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.106 0.894 49 H 0.113 0.887 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.437 -3.098 -16.393 24.864 hybrid contribution 2.370 -0.321 1.771 2.976 sum -16.067 -3.419 -14.622 21.992 Atomic orbital electron populations 1.21698 0.93310 1.03220 1.02020 1.20664 0.97542 0.86762 1.05732 1.23389 0.93848 0.99743 0.90946 1.23043 0.93070 0.94514 0.99016 1.20943 0.99486 0.96449 0.97573 1.17769 0.83665 0.81096 0.81201 1.90803 1.38240 1.34445 1.80144 1.48596 1.29145 1.48501 1.07221 1.22932 0.91063 0.94573 0.94497 1.22707 0.93022 1.04384 0.94251 1.21406 0.96877 0.95682 0.93305 1.22710 0.97755 0.98567 0.96238 1.21763 0.91760 0.83141 1.00529 1.44932 1.43614 1.05424 1.41315 1.19411 1.12806 0.91084 1.13227 0.89999 1.25600 1.01845 0.97849 1.00746 1.70053 1.41625 1.14114 1.34162 0.85175 0.78579 0.77878 0.77842 1.20800 1.22264 1.19934 1.21330 0.91147 0.94860 0.90139 1.21698 0.92012 0.99742 0.85298 1.23197 0.91982 0.99297 0.89729 1.20712 1.02676 0.87824 1.04047 1.73034 1.09796 1.06280 1.21249 1.72682 1.18181 0.97549 1.20188 0.89945 0.92730 0.93119 0.88567 0.86838 0.79739 0.88341 0.88639 0.88844 0.87278 0.90211 0.90176 0.91182 1.00298 0.94469 0.93604 0.96625 0.93498 0.91431 0.89383 0.88707 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.78 71.98 0.70 -0.65 16 2 C -0.07 -0.63 6.35 29.85 0.19 -0.44 16 3 C 0.07 1.09 6.25 42.62 0.27 1.36 16 4 C -0.07 -1.08 8.00 22.79 0.18 -0.90 16 5 C -0.13 -2.89 5.44 -19.83 -0.11 -3.00 16 6 C 0.57 15.35 7.03 86.87 0.61 15.96 16 7 O -0.56 -18.93 15.35 -3.75 -0.06 -18.99 16 8 N -0.60 -14.39 3.34 -815.93 -2.73 -17.12 16 9 C 0.09 1.41 5.23 86.93 0.45 1.86 16 10 C -0.11 -1.89 6.04 31.59 0.19 -1.70 16 11 C -0.07 -2.03 0.60 -51.84 -0.03 -2.06 16 12 C -0.11 -3.76 6.04 31.56 0.19 -3.57 16 13 C 0.15 7.24 5.85 86.92 0.51 7.75 16 14 N -0.63 -30.61 3.41 -693.03 -2.36 -32.97 16 15 C -0.24 -12.81 10.28 84.03 0.86 -11.94 16 16 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 17 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 18 N -0.95 -55.98 10.10 21.65 0.22 -55.76 16 19 Si 0.98 44.88 29.55 68.60 2.03 46.90 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 C 0.15 5.42 6.40 86.15 0.55 5.97 16 24 C 0.13 4.01 6.03 86.14 0.52 4.53 16 25 C 0.10 2.45 6.90 42.92 0.30 2.75 16 26 C -0.09 -2.01 8.91 71.23 0.63 -1.38 16 27 N -0.26 -6.61 11.42 -46.94 -0.54 -7.15 16 28 N -0.24 -5.55 11.04 -47.68 -0.53 -6.08 16 29 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.05 0.65 7.96 -2.39 -0.02 0.63 16 32 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.11 0.45 7.92 -2.39 -0.02 0.43 16 34 H 0.19 1.88 5.85 -2.91 -0.02 1.86 16 35 H 0.10 1.13 7.29 -2.38 -0.02 1.11 16 36 H 0.10 1.13 6.96 -2.39 -0.02 1.11 16 37 H 0.09 1.47 8.07 -2.39 -0.02 1.45 16 38 H 0.11 1.65 7.62 -2.39 -0.02 1.63 16 39 H 0.08 2.35 7.62 -2.38 -0.02 2.33 16 40 H 0.08 2.47 8.07 -2.39 -0.02 2.45 16 41 H 0.07 3.83 5.89 -2.39 -0.01 3.81 16 42 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 43 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 44 H 0.05 1.52 7.53 -2.39 -0.02 1.50 16 45 H 0.02 0.59 7.61 -2.39 -0.02 0.57 16 46 H 0.05 1.69 7.61 -2.39 -0.02 1.67 16 47 H 0.07 2.10 7.53 -2.39 -0.02 2.08 16 48 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.08 1.74 6.83 -2.39 -0.02 1.72 16 Total: -1.00 -73.52 391.50 3.47 -70.05 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.94 Total: 9.90 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.49 Total: 11.21 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -5.93 Total: -119.08 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.06 Total: -18.99 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -73.52 3.47 -70.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041505449.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.075 kcal (2) G-P(sol) polarization free energy of solvation -73.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds