Wall clock time and date at job start Wed Apr 1 2020 03:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47293 * 2 1 4 4 C 1.38543 * 120.01400 * 125.02112 * 3 2 1 5 5 C 1.40074 * 117.81803 * 179.73202 * 4 3 2 6 6 C 1.48138 * 121.15058 * 180.27159 * 5 4 3 7 7 O 1.21513 * 120.00309 * 215.35704 * 6 5 4 8 8 N 1.34775 * 119.99979 * 35.35170 * 6 5 4 9 9 C 1.47583 * 125.67577 * 5.15996 * 8 6 5 10 10 C 1.55440 * 104.91464 * 156.08979 * 9 8 6 11 11 C 1.53491 * 101.29526 * 35.62943 * 10 9 8 12 12 C 1.53468 * 111.82134 * 204.13066 * 11 10 9 13 13 C 1.54629 * 102.74528 * 272.84449 * 12 11 10 14 14 N 1.47153 * 107.34509 * 339.33781 * 13 12 11 15 15 C 1.36934 * 125.59987 * 179.06366 * 14 13 12 16 16 H 1.07998 * 119.99940 * 179.97438 * 15 14 13 17 17 C 1.38807 * 120.00023 * 359.97039 * 15 14 13 18 18 N 1.31618 * 120.00129 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99992 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47148 * 60.00193 * 19 17 15 21 21 H 1.48504 * 109.47496 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47334 * 300.00415 * 19 17 15 23 23 C 1.47757 * 108.79866 * 359.08311 * 14 13 12 24 24 C 1.47443 * 125.67876 * 185.46351 * 8 6 5 25 25 C 1.39770 * 117.70487 * 0.48243 * 5 4 3 26 26 C 1.50700 * 120.17344 * 179.78305 * 25 5 4 27 27 N 1.31899 * 119.65445 * 359.51640 * 25 5 4 28 28 N 1.28279 * 122.32834 * 0.24336 * 27 25 5 29 29 H 1.09008 * 109.46677 * 299.99289 * 1 2 3 30 30 H 1.08990 * 109.47525 * 59.99160 * 1 2 3 31 31 H 1.08997 * 109.46795 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47344 * 240.00553 * 2 1 3 33 33 H 1.09000 * 109.47900 * 120.00461 * 2 1 3 34 34 H 1.07998 * 121.09317 * 359.97438 * 4 3 2 35 35 H 1.09001 * 110.32904 * 275.07920 * 9 8 6 36 36 H 1.09003 * 110.32532 * 37.29532 * 9 8 6 37 37 H 1.09004 * 111.23631 * 277.57453 * 10 9 8 38 38 H 1.08993 * 110.96482 * 153.58035 * 10 9 8 39 39 H 1.09000 * 110.75720 * 31.15852 * 12 11 10 40 40 H 1.09003 * 110.75869 * 154.34805 * 12 11 10 41 41 H 1.09000 * 109.87021 * 98.77864 * 13 12 11 42 42 H 1.09002 * 109.87313 * 219.75337 * 13 12 11 43 43 H 0.97001 * 119.99944 * 179.97438 * 18 17 15 44 44 H 1.09000 * 110.39900 * 263.54570 * 23 14 13 45 45 H 1.09003 * 110.39616 * 141.13876 * 23 14 13 46 46 H 1.09003 * 109.99642 * 301.54347 * 24 8 6 47 47 H 1.08999 * 109.99363 * 62.82991 * 24 8 6 48 48 H 1.08997 * 109.47297 * 265.02833 * 26 25 5 49 49 H 1.09002 * 109.46922 * 145.02442 * 26 25 5 50 50 H 1.09003 * 109.46610 * 25.02879 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9125 1.8447 0.9824 5 6 3.3545 3.1730 0.9352 6 6 4.3005 3.7023 1.9449 7 8 4.2052 4.8534 2.3223 8 7 5.2667 2.9070 2.4451 9 6 5.5643 1.5311 2.0019 10 6 7.0503 1.2971 2.3934 11 6 7.1398 2.0766 3.7126 12 6 8.5783 2.5141 4.0202 13 6 9.1540 1.2908 4.7705 14 7 8.0141 0.5175 5.2884 15 6 8.0997 -0.6510 5.9972 16 1 7.2006 -1.1446 6.3352 17 6 9.3421 -1.2012 6.2809 18 7 10.4379 -0.5994 5.8693 19 14 9.4588 -2.7956 7.2471 20 1 8.7489 -3.8730 6.5120 21 1 10.8863 -3.1687 7.4162 22 1 8.8341 -2.6125 8.5819 23 6 6.7620 1.2089 4.9177 24 6 6.1985 3.2644 3.5305 25 6 2.8688 3.9833 -0.0950 26 6 3.3039 5.4226 -0.1958 27 7 2.0317 3.4801 -0.9815 28 7 1.6346 2.2612 -0.9354 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.2498 1.1720 1.7570 35 1 4.9180 0.8195 2.5159 36 1 5.4396 1.4458 0.9224 37 1 7.7257 1.7138 1.6462 38 1 7.2499 0.2372 2.5506 39 1 9.1315 2.6977 3.0991 40 1 8.5852 3.3993 4.6562 41 1 9.7374 0.6764 4.0848 42 1 9.7834 1.6246 5.5955 43 1 11.3061 -0.9837 6.0679 44 1 6.4144 1.8329 5.7410 45 1 5.9963 0.4848 4.6391 46 1 6.7677 4.1524 3.2558 47 1 5.6451 3.4469 4.4517 48 1 2.5704 6.0594 0.2986 49 1 3.3822 5.7057 -1.2455 50 1 4.2740 5.5434 0.2864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041505450.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:28 Heat of formation + Delta-G solvation = 49.167476 kcal Electronic energy + Delta-G solvation = -30703.486852 eV Core-core repulsion = 26731.802274 eV Total energy + Delta-G solvation = -3971.684578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.72293 -40.28018 -38.62244 -36.00465 -35.44219 -33.95050 -32.81945 -31.85929 -30.46059 -29.58660 -28.61924 -28.05714 -26.46407 -25.49531 -24.07358 -23.66691 -22.81824 -22.43405 -20.34052 -19.84795 -19.00747 -17.95742 -17.34802 -16.71448 -16.42541 -16.12933 -15.78014 -15.38352 -14.96602 -14.78167 -14.54133 -14.36474 -14.06064 -13.93024 -13.69435 -13.33136 -13.14482 -12.87234 -12.65491 -12.62588 -12.56098 -12.37181 -12.15668 -12.06648 -11.67815 -11.55625 -11.39763 -11.30734 -11.12014 -10.97030 -10.82696 -10.64274 -10.46963 -10.29471 -10.12040 -10.04192 -9.87091 -9.78473 -9.77635 -9.70424 -8.81361 -8.66480 -6.91496 -5.78282 -3.12248 0.08696 0.51953 2.40222 2.62909 3.19633 3.35030 3.39953 3.41093 3.57215 3.86752 4.03347 4.12050 4.35761 4.42863 4.56144 4.63685 4.76327 4.78682 4.86765 4.89237 5.09853 5.17257 5.17587 5.27941 5.30408 5.34783 5.39968 5.45839 5.52228 5.59838 5.64913 5.66532 5.70895 5.77503 5.78342 5.86547 5.93113 5.98237 5.99898 6.12662 6.15694 6.25484 6.40707 6.49190 6.59059 6.69891 7.23371 7.48033 7.54234 7.75341 7.79557 8.17787 8.37123 9.14500 9.74483 10.39992 11.33091 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014519 B = 0.002733 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.059882 B =10241.982045 C =11714.432769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.069 4.069 3 C 0.061 3.939 4 C -0.082 4.082 5 C -0.120 4.120 6 C 0.575 3.425 7 O -0.522 6.522 8 N -0.605 5.605 9 C 0.093 3.907 10 C -0.109 4.109 11 C -0.085 4.085 12 C -0.131 4.131 13 C 0.180 3.820 14 N -0.603 5.603 15 C -0.231 4.231 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.921 5.921 19 Si 0.911 3.089 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.151 3.849 24 C 0.125 3.875 25 C 0.112 3.888 26 C -0.102 4.102 27 N -0.241 5.241 28 N -0.223 5.223 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.159 0.841 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.253 0.747 44 H 0.021 0.979 45 H 0.039 0.961 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.859 5.054 -12.352 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.083 4.083 4 C -0.111 4.111 5 C -0.135 4.135 6 C 0.362 3.638 7 O -0.399 6.399 8 N -0.338 5.338 9 C -0.030 4.030 10 C -0.147 4.147 11 C -0.086 4.086 12 C -0.169 4.169 13 C 0.055 3.945 14 N -0.330 5.330 15 C -0.359 4.359 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.568 5.568 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.025 3.975 24 C 0.004 3.996 25 C -0.032 4.032 26 C -0.160 4.160 27 N -0.083 5.083 28 N -0.065 5.065 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.176 0.824 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.057 0.943 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.109 0.891 49 H 0.099 0.901 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.686 5.836 -13.443 20.748 hybrid contribution 1.019 -1.194 1.922 2.481 sum -13.667 4.642 -11.521 18.468 Atomic orbital electron populations 1.21711 0.93589 1.02319 1.02833 1.20485 0.97421 0.88773 1.04099 1.22876 0.94535 0.98811 0.92089 1.22778 0.94839 0.94928 0.98595 1.21073 0.99888 0.94826 0.97689 1.17503 0.80134 0.84978 0.81204 1.90801 1.72212 1.16494 1.60401 1.48598 1.32664 1.15555 1.36955 1.22776 0.98274 0.82478 0.99456 1.22587 0.93239 1.02677 0.96179 1.21605 0.96125 0.94397 0.96517 1.22715 0.93401 1.00330 1.00468 1.21202 0.89241 0.88074 0.95965 1.44544 0.99563 1.24733 1.64171 1.18981 0.92673 0.97306 1.26931 0.90551 1.24787 0.95378 0.99127 1.00962 1.69944 0.96886 1.39732 1.50285 0.86217 0.76693 0.83087 0.79842 1.21161 1.21597 1.21186 1.21318 0.90667 0.93386 0.92137 1.21905 0.90376 0.98146 0.89209 1.23048 0.91898 0.98487 0.89816 1.20807 1.03327 0.88234 1.03604 1.73057 1.08767 1.05473 1.21015 1.72742 1.17122 0.97454 1.19205 0.92779 0.91390 0.91706 0.89132 0.89600 0.82360 0.90728 0.90895 0.90684 0.88410 0.91793 0.92052 0.93467 0.93891 0.93656 0.96164 0.94315 0.90774 0.90776 0.89132 0.90114 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.78 37.16 0.36 -0.65 16 2 C -0.07 -0.48 6.35 -27.88 -0.18 -0.66 16 3 C 0.06 0.61 6.25 -82.45 -0.52 0.10 16 4 C -0.08 -0.81 7.99 -38.78 -0.31 -1.12 16 5 C -0.12 -1.43 5.46 -104.57 -0.57 -2.00 16 6 C 0.57 7.64 7.05 -12.20 -0.09 7.55 16 7 O -0.52 -8.19 15.06 5.35 0.08 -8.11 16 8 N -0.60 -7.56 3.34 -171.74 -0.57 -8.13 16 9 C 0.09 1.00 5.17 -2.15 -0.01 0.99 16 10 C -0.11 -1.43 5.99 -25.18 -0.15 -1.58 16 11 C -0.08 -1.28 0.61 -154.08 -0.09 -1.37 16 12 C -0.13 -2.18 5.85 -25.63 -0.15 -2.33 16 13 C 0.18 4.03 5.35 -2.83 -0.02 4.01 16 14 N -0.60 -14.18 3.41 -170.55 -0.58 -14.76 16 15 C -0.23 -6.06 10.28 -15.06 -0.15 -6.21 16 16 H 0.08 1.94 7.83 -52.49 -0.41 1.52 16 17 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 18 N -0.92 -25.92 10.30 55.49 0.57 -25.35 16 19 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 23 C 0.15 2.79 6.10 -3.24 -0.02 2.77 16 24 C 0.13 1.70 6.14 -3.70 -0.02 1.68 16 25 C 0.11 1.36 6.90 -81.99 -0.57 0.80 16 26 C -0.10 -1.06 9.31 36.01 0.34 -0.72 16 27 N -0.24 -3.15 11.42 33.81 0.39 -2.76 16 28 N -0.22 -2.74 11.04 33.58 0.37 -2.37 16 29 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.07 0.53 7.96 -51.93 -0.41 0.12 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.46 7.92 -51.93 -0.41 0.05 16 34 H 0.16 1.25 5.76 -52.49 -0.30 0.95 16 35 H 0.07 0.72 6.94 -51.93 -0.36 0.36 16 36 H 0.07 0.69 7.26 -51.93 -0.38 0.31 16 37 H 0.07 0.93 7.85 -51.93 -0.41 0.53 16 38 H 0.10 1.45 8.00 -51.93 -0.42 1.04 16 39 H 0.06 0.97 7.80 -51.93 -0.40 0.56 16 40 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 41 H 0.05 1.17 7.38 -51.93 -0.38 0.79 16 42 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.02 0.39 7.79 -51.93 -0.40 -0.01 16 45 H 0.04 0.69 7.96 -51.93 -0.41 0.27 16 46 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 47 H 0.07 1.04 7.62 -51.93 -0.40 0.64 16 48 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.09 1.00 6.10 -51.93 -0.32 0.68 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -31.07 392.14 -8.98 -40.05 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.88 Total: -1.69 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.24 Total: 0.99 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.17 Total: -53.38 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.08 Total: -8.11 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.07 -8.98 -40.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041505450.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.222 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds