Wall clock time and date at job start Wed Apr 1 2020 03:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47293 * 2 1 4 4 C 1.38543 * 120.01400 * 125.02112 * 3 2 1 5 5 C 1.40074 * 117.81803 * 179.73202 * 4 3 2 6 6 C 1.48138 * 121.15058 * 180.27159 * 5 4 3 7 7 O 1.21513 * 120.00309 * 215.35704 * 6 5 4 8 8 N 1.34775 * 119.99979 * 35.35170 * 6 5 4 9 9 C 1.47583 * 125.67577 * 5.15996 * 8 6 5 10 10 C 1.55440 * 104.91464 * 156.08979 * 9 8 6 11 11 C 1.53491 * 101.29526 * 35.62943 * 10 9 8 12 12 C 1.53468 * 111.82134 * 204.13066 * 11 10 9 13 13 C 1.54629 * 102.74528 * 272.84449 * 12 11 10 14 14 N 1.47153 * 107.34509 * 339.33781 * 13 12 11 15 15 C 1.36934 * 125.59987 * 179.06366 * 14 13 12 16 16 H 1.07998 * 119.99940 * 179.97438 * 15 14 13 17 17 C 1.38807 * 120.00023 * 359.97039 * 15 14 13 18 18 N 1.31618 * 120.00129 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99992 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47148 * 60.00193 * 19 17 15 21 21 H 1.48504 * 109.47496 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47334 * 300.00415 * 19 17 15 23 23 C 1.47757 * 108.79866 * 359.08311 * 14 13 12 24 24 C 1.47443 * 125.67876 * 185.46351 * 8 6 5 25 25 C 1.39770 * 117.70487 * 0.48243 * 5 4 3 26 26 C 1.50700 * 120.17344 * 179.78305 * 25 5 4 27 27 N 1.31899 * 119.65445 * 359.51640 * 25 5 4 28 28 N 1.28279 * 122.32834 * 0.24336 * 27 25 5 29 29 H 1.09008 * 109.46677 * 299.99289 * 1 2 3 30 30 H 1.08990 * 109.47525 * 59.99160 * 1 2 3 31 31 H 1.08997 * 109.46795 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47344 * 240.00553 * 2 1 3 33 33 H 1.09000 * 109.47900 * 120.00461 * 2 1 3 34 34 H 1.07998 * 121.09317 * 359.97438 * 4 3 2 35 35 H 1.09001 * 110.32904 * 275.07920 * 9 8 6 36 36 H 1.09003 * 110.32532 * 37.29532 * 9 8 6 37 37 H 1.09004 * 111.23631 * 277.57453 * 10 9 8 38 38 H 1.08993 * 110.96482 * 153.58035 * 10 9 8 39 39 H 1.09000 * 110.75720 * 31.15852 * 12 11 10 40 40 H 1.09003 * 110.75869 * 154.34805 * 12 11 10 41 41 H 1.09000 * 109.87021 * 98.77864 * 13 12 11 42 42 H 1.09002 * 109.87313 * 219.75337 * 13 12 11 43 43 H 0.97001 * 119.99944 * 179.97438 * 18 17 15 44 44 H 1.09000 * 110.39900 * 263.54570 * 23 14 13 45 45 H 1.09003 * 110.39616 * 141.13876 * 23 14 13 46 46 H 1.09003 * 109.99642 * 301.54347 * 24 8 6 47 47 H 1.08999 * 109.99363 * 62.82991 * 24 8 6 48 48 H 1.08997 * 109.47297 * 265.02833 * 26 25 5 49 49 H 1.09002 * 109.46922 * 145.02442 * 26 25 5 50 50 H 1.09003 * 109.46610 * 25.02879 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9125 1.8447 0.9824 5 6 3.3545 3.1730 0.9352 6 6 4.3005 3.7023 1.9449 7 8 4.2052 4.8534 2.3223 8 7 5.2667 2.9070 2.4451 9 6 5.5643 1.5311 2.0019 10 6 7.0503 1.2971 2.3934 11 6 7.1398 2.0766 3.7126 12 6 8.5783 2.5141 4.0202 13 6 9.1540 1.2908 4.7705 14 7 8.0141 0.5175 5.2884 15 6 8.0997 -0.6510 5.9972 16 1 7.2006 -1.1446 6.3352 17 6 9.3421 -1.2012 6.2809 18 7 10.4379 -0.5994 5.8693 19 14 9.4588 -2.7956 7.2471 20 1 8.7489 -3.8730 6.5120 21 1 10.8863 -3.1687 7.4162 22 1 8.8341 -2.6125 8.5819 23 6 6.7620 1.2089 4.9177 24 6 6.1985 3.2644 3.5305 25 6 2.8688 3.9833 -0.0950 26 6 3.3039 5.4226 -0.1958 27 7 2.0317 3.4801 -0.9815 28 7 1.6346 2.2612 -0.9354 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.2498 1.1720 1.7570 35 1 4.9180 0.8195 2.5159 36 1 5.4396 1.4458 0.9224 37 1 7.7257 1.7138 1.6462 38 1 7.2499 0.2372 2.5506 39 1 9.1315 2.6977 3.0991 40 1 8.5852 3.3993 4.6562 41 1 9.7374 0.6764 4.0848 42 1 9.7834 1.6246 5.5955 43 1 11.3061 -0.9837 6.0679 44 1 6.4144 1.8329 5.7410 45 1 5.9963 0.4848 4.6391 46 1 6.7677 4.1524 3.2558 47 1 5.6451 3.4469 4.4517 48 1 2.5704 6.0594 0.2986 49 1 3.3822 5.7057 -1.2455 50 1 4.2740 5.5434 0.2864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041505450.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:27 Heat of formation + Delta-G solvation = 30.943553 kcal Electronic energy + Delta-G solvation = -30704.277101 eV Core-core repulsion = 26731.802274 eV Total energy + Delta-G solvation = -3972.474826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.60103 -41.37778 -39.82495 -37.33193 -36.21537 -34.97685 -34.33542 -32.70910 -31.87467 -30.90872 -29.92359 -28.93107 -27.66079 -26.90513 -25.23011 -24.64132 -23.89312 -23.23152 -22.09191 -20.78895 -20.26175 -18.86211 -18.80863 -18.07048 -17.42487 -16.97215 -16.75464 -16.62559 -16.31334 -15.93935 -15.70640 -15.54860 -15.21326 -14.97571 -14.65595 -14.41482 -14.12132 -13.90640 -13.85748 -13.83396 -13.72052 -13.31790 -13.19033 -13.03933 -12.94014 -12.78881 -12.73982 -12.57594 -12.44800 -12.13958 -12.05730 -11.86648 -11.76925 -11.62961 -11.48542 -11.46124 -11.37525 -11.19869 -10.66833 -10.65156 -10.58411 -9.82264 -8.85421 -7.81280 -5.15941 -0.77445 -0.28273 1.42699 1.48884 1.50949 1.57083 1.63421 2.34427 2.52163 2.80109 2.98728 3.21477 3.31566 3.37143 3.47745 3.51929 3.64549 3.68332 3.90354 3.95440 4.11463 4.18811 4.20923 4.27359 4.37210 4.40188 4.52393 4.53982 4.60253 4.61708 4.63409 4.71166 4.76636 4.83979 4.87716 4.93487 5.00965 5.03459 5.05408 5.06920 5.16063 5.18334 5.19907 5.24903 5.36360 5.41882 5.49994 5.70967 5.82602 6.22653 6.24650 6.79042 7.14213 7.52862 7.81669 8.45757 9.28624 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014519 B = 0.002733 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.059882 B =10241.982045 C =11714.432769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 C 0.064 3.936 4 C -0.069 4.069 5 C -0.132 4.132 6 C 0.579 3.421 7 O -0.551 6.551 8 N -0.602 5.602 9 C 0.097 3.903 10 C -0.106 4.106 11 C -0.072 4.072 12 C -0.118 4.118 13 C 0.189 3.811 14 N -0.623 5.623 15 C -0.237 4.237 16 H 0.084 0.916 17 C -0.065 4.065 18 N -0.951 5.951 19 Si 0.973 3.027 20 H -0.274 1.274 21 H -0.299 1.299 22 H -0.281 1.281 23 C 0.149 3.851 24 C 0.133 3.867 25 C 0.103 3.897 26 C -0.098 4.098 27 N -0.264 5.264 28 N -0.244 5.244 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.184 0.816 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.015 0.985 42 H 0.001 0.999 43 H 0.245 0.755 44 H 0.019 0.981 45 H 0.052 0.948 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.091 0.909 49 H 0.093 0.907 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.531 4.117 -13.067 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.081 4.081 4 C -0.099 4.099 5 C -0.146 4.146 6 C 0.367 3.633 7 O -0.430 6.430 8 N -0.334 5.334 9 C -0.024 4.024 10 C -0.144 4.144 11 C -0.074 4.074 12 C -0.156 4.156 13 C 0.064 3.936 14 N -0.349 5.349 15 C -0.367 4.367 16 H 0.101 0.899 17 C -0.258 4.258 18 N -0.600 5.600 19 Si 0.802 3.198 20 H -0.200 1.200 21 H -0.225 1.225 22 H -0.207 1.207 23 C 0.024 3.976 24 C 0.011 3.989 25 C -0.042 4.042 26 C -0.156 4.156 27 N -0.105 5.105 28 N -0.086 5.086 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.201 0.799 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.033 0.967 42 H 0.019 0.981 43 H 0.054 0.946 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.090 0.910 48 H 0.110 0.890 49 H 0.111 0.889 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.405 4.900 -14.181 22.232 hybrid contribution 1.496 -0.921 2.170 2.792 sum -14.910 3.979 -12.010 19.555 Atomic orbital electron populations 1.21702 0.93669 1.03185 1.01799 1.20659 0.97276 0.87005 1.05810 1.23355 0.93836 0.99735 0.91175 1.23051 0.93856 0.94314 0.98638 1.20987 1.00290 0.95770 0.97522 1.17625 0.80108 0.84541 0.81030 1.90790 1.72996 1.17775 1.61406 1.48557 1.32235 1.16150 1.36479 1.22870 0.96748 0.81764 1.01036 1.22531 0.95340 1.01330 0.95203 1.21411 0.95042 0.94720 0.96199 1.22572 0.94472 0.97864 1.00704 1.20920 0.88869 0.89573 0.94267 1.44814 1.01725 1.24468 1.63901 1.19390 0.92845 0.98108 1.26310 0.89867 1.25571 0.95294 1.02300 1.02590 1.70170 0.96930 1.41060 1.51847 0.85231 0.76037 0.79854 0.78683 1.19986 1.22518 1.20717 1.21480 0.88991 0.93753 0.93378 1.21704 0.90267 0.97284 0.89667 1.23242 0.91890 0.99120 0.89930 1.20787 1.02761 0.87688 1.04344 1.73023 1.09551 1.06157 1.21784 1.72681 1.17849 0.97614 1.20468 0.93381 0.92881 0.89897 0.88073 0.87154 0.79925 0.88871 0.88774 0.89682 0.90050 0.89755 0.91130 0.96689 0.98106 0.94574 0.96337 0.93023 0.90319 0.90993 0.89007 0.88870 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.78 71.98 0.70 -0.96 16 2 C -0.07 -0.73 6.35 29.85 0.19 -0.54 16 3 C 0.06 1.11 6.25 42.63 0.27 1.38 16 4 C -0.07 -1.15 7.99 22.79 0.18 -0.96 16 5 C -0.13 -2.82 5.46 -19.83 -0.11 -2.93 16 6 C 0.58 14.09 7.05 86.87 0.61 14.70 16 7 O -0.55 -16.53 15.06 -3.76 -0.06 -16.58 16 8 N -0.60 -13.26 3.34 -815.56 -2.73 -15.98 16 9 C 0.10 1.74 5.17 87.01 0.45 2.19 16 10 C -0.11 -2.51 5.99 31.60 0.19 -2.32 16 11 C -0.07 -2.03 0.61 -51.90 -0.03 -2.06 16 12 C -0.12 -3.81 5.85 31.31 0.18 -3.63 16 13 C 0.19 8.66 5.35 86.81 0.46 9.12 16 14 N -0.62 -29.34 3.41 -693.50 -2.36 -31.70 16 15 C -0.24 -12.49 10.28 84.03 0.86 -11.63 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 17 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 18 N -0.95 -55.25 10.30 21.65 0.22 -55.03 16 19 Si 0.97 43.97 29.55 68.60 2.03 46.00 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 23 C 0.15 5.27 6.10 86.21 0.53 5.80 16 24 C 0.13 3.28 6.14 86.08 0.53 3.81 16 25 C 0.10 2.39 6.90 42.92 0.30 2.68 16 26 C -0.10 -1.96 9.31 71.24 0.66 -1.29 16 27 N -0.26 -6.64 11.42 -46.94 -0.54 -7.17 16 28 N -0.24 -5.67 11.04 -47.69 -0.53 -6.19 16 29 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.05 0.76 7.96 -2.39 -0.02 0.74 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 0.66 7.92 -2.39 -0.02 0.64 16 34 H 0.18 2.03 5.76 -2.91 -0.02 2.02 16 35 H 0.09 1.37 6.94 -2.39 -0.02 1.35 16 36 H 0.09 1.36 7.26 -2.39 -0.02 1.34 16 37 H 0.08 1.87 7.85 -2.39 -0.02 1.85 16 38 H 0.08 2.26 8.00 -2.39 -0.02 2.24 16 39 H 0.08 2.40 7.80 -2.39 -0.02 2.38 16 40 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 41 H 0.01 0.77 7.38 -2.39 -0.02 0.75 16 42 H 0.00 0.04 7.50 -2.39 -0.02 0.02 16 43 H 0.24 14.01 8.31 -92.71 -0.77 13.24 16 44 H 0.02 0.68 7.79 -2.39 -0.02 0.66 16 45 H 0.05 1.70 7.96 -2.39 -0.02 1.68 16 46 H 0.08 1.92 7.89 -2.39 -0.02 1.90 16 47 H 0.07 1.85 7.62 -2.39 -0.02 1.83 16 48 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 50 H 0.08 1.75 6.10 -2.39 -0.01 1.74 16 Total: -1.00 -69.52 392.14 3.43 -66.10 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.94 Total: 10.26 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 6.44 Total: 10.31 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -5.93 Total: -116.08 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.06 Total: -16.58 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -69.52 3.43 -66.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041505450.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.042 kcal (2) G-P(sol) polarization free energy of solvation -69.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds