Wall clock time and date at job start Wed Apr 1 2020 03:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47296 * 2 1 4 4 C 1.38548 * 120.01258 * 124.99989 * 3 2 1 5 5 C 1.40082 * 117.81835 * 180.02562 * 4 3 2 6 6 C 1.48134 * 121.14727 * 179.97438 * 5 4 3 7 7 O 1.21514 * 120.00083 * 231.26516 * 6 5 4 8 8 N 1.34786 * 119.99756 * 51.26660 * 6 5 4 9 9 C 1.45234 * 119.33656 * 4.89613 * 8 6 5 10 10 C 1.50600 * 112.83282 * 135.99853 * 9 8 6 11 11 C 1.48863 * 117.91061 * 27.68468 * 10 9 8 12 12 H 1.09002 * 106.76049 * 217.69212 * 11 10 9 13 13 C 1.55055 * 111.54956 * 101.50931 * 11 10 9 14 14 C 1.55060 * 101.27724 * 194.53747 * 13 11 10 15 15 N 1.47558 * 104.84722 * 35.96625 * 14 13 11 16 16 C 1.36938 * 125.85595 * 156.09631 * 15 14 13 17 17 H 1.08006 * 119.99853 * 327.70215 * 16 15 14 18 18 C 1.38811 * 120.00280 * 147.69625 * 16 15 14 19 19 N 1.31611 * 120.00307 * 160.99109 * 18 16 15 20 20 Si 1.86801 * 119.99620 * 340.98957 * 18 16 15 21 21 H 1.48501 * 109.46907 * 86.63323 * 20 18 16 22 22 H 1.48496 * 109.46975 * 206.62786 * 20 18 16 23 23 H 1.48497 * 109.47484 * 326.63036 * 20 18 16 24 24 C 1.47624 * 108.28717 * 336.11724 * 15 14 13 25 25 H 1.09001 * 108.10475 * 244.72530 * 24 15 14 26 26 C 1.44674 * 119.91221 * 185.28511 * 8 6 5 27 27 C 1.39767 * 117.70219 * 0.25408 * 5 4 3 28 28 C 1.50703 * 120.16544 * 179.72589 * 27 5 4 29 29 N 1.31890 * 119.65917 * 359.48863 * 27 5 4 30 30 N 1.28279 * 122.32729 * 0.53012 * 29 27 5 31 31 H 1.08997 * 109.46943 * 299.99771 * 1 2 3 32 32 H 1.08996 * 109.47287 * 59.99762 * 1 2 3 33 33 H 1.09005 * 109.47210 * 179.97438 * 1 2 3 34 34 H 1.09011 * 109.46903 * 240.00469 * 2 1 3 35 35 H 1.08998 * 109.47263 * 120.01012 * 2 1 3 36 36 H 1.08002 * 121.09152 * 0.02562 * 4 3 2 37 37 H 1.09002 * 108.81146 * 15.13133 * 9 8 6 38 38 H 1.09007 * 108.80542 * 256.86277 * 9 8 6 39 39 H 1.08995 * 107.75582 * 265.54606 * 10 9 8 40 40 H 1.09000 * 107.72299 * 149.79201 * 10 9 8 41 41 H 1.09006 * 111.07159 * 76.52170 * 13 11 10 42 42 H 1.09004 * 111.06974 * 312.54679 * 13 11 10 43 43 H 1.08995 * 110.36424 * 154.80961 * 14 13 11 44 44 H 1.09001 * 110.36158 * 277.02161 * 14 13 11 45 45 H 0.97001 * 120.00409 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.26024 * 108.00625 * 26 8 6 47 47 H 1.08993 * 108.17628 * 349.66045 * 26 8 6 48 48 H 1.08999 * 109.47139 * 84.33064 * 28 27 5 49 49 H 1.09008 * 109.46695 * 204.32629 * 28 27 5 50 50 H 1.08997 * 109.47375 * 324.31753 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9121 1.8447 0.9827 5 6 3.3493 3.1748 0.9391 6 6 4.2895 3.7060 1.9532 7 8 4.0285 4.7356 2.5434 8 7 5.4345 3.0472 2.2211 9 6 5.7837 1.8780 1.4335 10 6 7.2324 1.8619 1.0222 11 6 8.2124 2.5643 1.8952 12 1 8.9418 3.0334 1.2349 13 6 8.9963 1.5680 2.7880 14 6 9.6316 2.5273 3.8275 15 7 8.6134 3.5720 4.0495 16 6 8.4981 4.3551 5.1670 17 1 8.7744 3.9605 6.1337 18 6 8.0262 5.6559 5.0574 19 7 7.5621 6.2793 6.1195 20 14 8.0502 6.5217 3.4023 21 1 6.8085 6.1964 2.6555 22 1 8.1311 7.9894 3.6126 23 1 9.2298 6.0675 2.6230 24 6 7.7402 3.6280 2.8605 25 1 7.8731 4.6013 2.3881 26 6 6.2959 3.5032 3.2903 27 6 2.8632 3.9851 -0.0907 28 6 3.2923 5.4266 -0.1869 29 7 2.0308 3.4805 -0.9806 30 7 1.6344 2.2613 -0.9351 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5140 0.8899 36 1 3.2498 1.1718 1.7571 37 1 5.1636 1.8600 0.5373 38 1 5.5750 0.9837 2.0207 39 1 7.3001 2.3003 0.0266 40 1 7.5436 0.8202 0.9443 41 1 9.7637 1.0479 2.2144 42 1 8.3224 0.8593 3.2694 43 1 9.8391 1.9964 4.7564 44 1 10.5466 2.9658 3.4293 45 1 7.2327 7.1885 6.0430 46 1 6.2342 2.8044 4.1245 47 1 5.9399 4.4787 3.6212 48 1 4.2432 5.4881 -0.7160 49 1 2.5370 5.9950 -0.7297 50 1 3.4067 5.8393 0.8155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042162247.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:53 Heat of formation + Delta-G solvation = 33.288689 kcal Electronic energy + Delta-G solvation = -31849.456817 eV Core-core repulsion = 27877.083683 eV Total energy + Delta-G solvation = -3972.373134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.74864 -41.49816 -39.94131 -37.22885 -36.26542 -35.10354 -34.85695 -33.46325 -32.72216 -31.26022 -30.66563 -29.02371 -27.50212 -26.47876 -25.56301 -24.55291 -24.07219 -23.41176 -22.08001 -21.63576 -19.75464 -18.95678 -18.82955 -18.32719 -17.70497 -17.41132 -16.89547 -16.63343 -16.29623 -16.19423 -16.00621 -15.39497 -15.31601 -15.16161 -15.02352 -14.80885 -14.57481 -14.14652 -14.09421 -14.04683 -13.70755 -13.65487 -13.43510 -13.22355 -13.15907 -12.85894 -12.74036 -12.62611 -12.37866 -12.28512 -12.14209 -11.91918 -11.86798 -11.64461 -11.57962 -11.41560 -11.18166 -11.08030 -10.77979 -10.69151 -10.60168 -9.81662 -8.93986 -8.29877 -5.63465 -0.76224 -0.33146 1.21111 1.24837 1.25195 1.34071 1.66468 2.26202 2.30754 2.75378 2.91470 3.00708 3.15861 3.27022 3.31676 3.55548 3.66811 3.70246 3.82014 3.91053 4.06211 4.10292 4.14309 4.17552 4.31517 4.33196 4.39191 4.43459 4.51293 4.52186 4.60525 4.64128 4.80335 4.81661 4.86078 4.88044 4.88936 4.98214 5.05147 5.07830 5.09360 5.10420 5.20372 5.27752 5.37178 5.42764 5.44104 5.46834 5.76600 6.07399 6.12361 6.72293 6.80875 7.46220 7.49314 8.09332 8.90530 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.003806 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.442162 B = 7355.027593 C = 8322.077346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 C 0.070 3.930 4 C -0.062 4.062 5 C -0.126 4.126 6 C 0.553 3.447 7 O -0.565 6.565 8 N -0.582 5.582 9 C 0.096 3.904 10 C -0.113 4.113 11 C -0.088 4.088 12 H 0.065 0.935 13 C -0.107 4.107 14 C 0.115 3.885 15 N -0.619 5.619 16 C -0.232 4.232 17 H 0.060 0.940 18 C -0.010 4.010 19 N -0.944 5.944 20 Si 0.931 3.069 21 H -0.282 1.282 22 H -0.311 1.311 23 H -0.269 1.269 24 C 0.147 3.853 25 H -0.003 1.003 26 C 0.121 3.879 27 C 0.100 3.900 28 C -0.116 4.116 29 N -0.256 5.256 30 N -0.244 5.244 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.190 0.810 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.026 0.974 45 H 0.262 0.738 46 H 0.067 0.933 47 H 0.046 0.954 48 H 0.091 0.909 49 H 0.099 0.901 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.415 -19.706 -16.733 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 C -0.075 4.075 4 C -0.092 4.092 5 C -0.141 4.141 6 C 0.341 3.659 7 O -0.444 6.444 8 N -0.313 5.313 9 C -0.025 4.025 10 C -0.151 4.151 11 C -0.107 4.107 12 H 0.084 0.916 13 C -0.144 4.144 14 C -0.009 4.009 15 N -0.345 5.345 16 C -0.361 4.361 17 H 0.078 0.922 18 C -0.207 4.207 19 N -0.589 5.589 20 Si 0.762 3.238 21 H -0.209 1.209 22 H -0.240 1.240 23 H -0.195 1.195 24 C 0.040 3.960 25 H 0.014 0.986 26 C -0.004 4.004 27 C -0.045 4.045 28 C -0.174 4.174 29 N -0.098 5.098 30 N -0.086 5.086 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.207 0.793 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.141 0.859 41 H 0.127 0.873 42 H 0.101 0.899 43 H 0.068 0.932 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.064 0.936 48 H 0.110 0.890 49 H 0.118 0.882 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.452 -18.730 -17.645 27.085 hybrid contribution 0.932 1.801 1.303 2.411 sum -7.520 -16.928 -16.342 24.702 Atomic orbital electron populations 1.21722 0.93929 1.03275 1.01651 1.20676 0.97000 0.86469 1.06223 1.23428 0.93285 0.99935 0.90832 1.22926 0.94017 0.93418 0.98811 1.20850 1.00042 0.96340 0.96832 1.18522 0.82051 0.83253 0.82120 1.90811 1.75967 1.24820 1.52808 1.47110 1.19970 1.30005 1.34207 1.21417 0.97664 0.87225 0.96192 1.20450 0.92177 1.03914 0.98607 1.20479 0.98610 0.95761 0.95884 0.91614 1.22940 0.99589 0.96011 0.95906 1.22009 0.91179 0.89486 0.98223 1.45089 1.30581 1.42423 1.16409 1.18447 1.40027 0.91805 0.85825 0.92206 1.25727 0.99526 0.97063 0.98355 1.69884 1.44445 1.13731 1.30838 0.86141 0.78282 0.76627 0.82731 1.20926 1.23951 1.19474 1.20389 0.89531 0.96934 0.89105 0.98565 1.20859 0.90930 1.00025 0.88606 1.23009 0.92533 0.98549 0.90440 1.20890 1.03261 0.88918 1.04338 1.73043 1.09089 1.06380 1.21277 1.72677 1.17663 0.97427 1.20790 0.93710 0.93037 0.89577 0.87487 0.86676 0.79265 0.88744 0.88147 0.91212 0.85884 0.87265 0.89856 0.93217 0.95569 0.92926 0.91486 0.93589 0.89021 0.88228 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.78 71.98 0.70 -0.87 16 2 C -0.07 -0.58 6.35 29.85 0.19 -0.39 16 3 C 0.07 1.22 6.25 42.62 0.27 1.49 16 4 C -0.06 -1.12 7.60 22.79 0.17 -0.95 16 5 C -0.13 -3.35 4.59 -19.83 -0.09 -3.44 16 6 C 0.55 19.11 6.73 86.87 0.58 19.69 16 7 O -0.57 -25.61 14.35 -3.76 -0.05 -25.66 16 8 N -0.58 -18.36 3.03 -840.63 -2.55 -20.91 16 9 C 0.10 1.81 5.17 85.84 0.44 2.26 16 10 C -0.11 -2.00 5.55 28.50 0.16 -1.85 16 11 C -0.09 -2.38 2.63 -11.99 -0.03 -2.41 16 12 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 13 C -0.11 -2.48 6.24 32.00 0.20 -2.28 16 14 C 0.11 4.01 7.26 86.88 0.63 4.64 16 15 N -0.62 -28.48 2.76 -675.16 -1.86 -30.34 16 16 C -0.23 -13.17 10.06 84.03 0.85 -12.32 16 17 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 18 C -0.01 -0.59 5.04 84.86 0.43 -0.16 16 19 N -0.94 -60.92 13.97 21.65 0.30 -60.62 16 20 Si 0.93 50.22 23.65 68.60 1.62 51.85 16 21 H -0.28 -15.45 6.31 99.48 0.63 -14.82 16 22 H -0.31 -17.02 7.11 99.48 0.71 -16.31 16 23 H -0.27 -13.86 7.04 99.48 0.70 -13.16 16 24 C 0.15 5.96 2.27 43.60 0.10 6.06 16 25 H 0.00 -0.14 3.62 -2.39 -0.01 -0.15 16 26 C 0.12 5.03 5.16 86.13 0.44 5.47 16 27 C 0.10 2.80 6.90 42.92 0.30 3.09 16 28 C -0.12 -3.21 9.72 71.24 0.69 -2.51 16 29 N -0.26 -7.13 11.42 -46.94 -0.54 -7.67 16 30 N -0.24 -5.88 11.04 -47.69 -0.53 -6.41 16 31 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.73 7.96 -2.39 -0.02 0.71 16 33 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.11 0.39 7.92 -2.39 -0.02 0.37 16 36 H 0.19 2.06 7.48 -2.91 -0.02 2.04 16 37 H 0.09 1.46 5.45 -2.39 -0.01 1.45 16 38 H 0.10 1.27 8.07 -2.38 -0.02 1.25 16 39 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 40 H 0.12 1.20 7.65 -2.39 -0.02 1.18 16 41 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 46 H 0.07 2.85 8.07 -2.39 -0.02 2.83 16 47 H 0.05 2.42 4.91 -2.39 -0.01 2.41 16 48 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 50 H 0.07 2.51 5.94 -2.39 -0.01 2.50 16 Total: -1.00 -82.74 380.91 3.30 -79.44 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 0.86 Total: 4.82 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 6.03 Total: 15.50 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -5.17 Total: -125.95 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.05 Total: -25.66 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 1.62 Total: 51.85 kcal Total: -82.74 3.30 -79.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042162247.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.730 kcal (2) G-P(sol) polarization free energy of solvation -82.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds