Wall clock time and date at job start Wed Apr 1 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31812 * 119.11996 * 2 1 4 4 C 1.32325 * 120.81666 * 179.97438 * 3 2 1 5 5 C 1.38620 * 119.10007 * 359.74663 * 4 3 2 6 6 C 1.38574 * 118.40069 * 0.51133 * 5 4 3 7 7 C 1.50703 * 120.44864 * 179.76348 * 6 5 4 8 8 C 1.52995 * 109.47308 * 124.72152 * 7 6 5 9 9 C 1.50703 * 109.47308 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99918 * 0.02562 * 9 8 7 11 11 N 1.34769 * 119.99921 * 179.97438 * 9 8 7 12 12 C 1.46596 * 119.75578 * 0.02562 * 11 9 8 13 13 C 1.53883 * 110.71280 * 227.76418 * 12 11 9 14 14 C 1.51984 * 107.28902 * 308.18810 * 13 12 11 15 15 H 1.08991 * 111.01382 * 303.48507 * 14 13 12 16 16 C 1.53692 * 115.61041 * 175.75089 * 14 13 12 17 17 C 1.55248 * 101.71775 * 206.06214 * 16 14 13 18 18 N 1.48156 * 107.06939 * 22.82353 * 17 16 14 19 19 C 1.36934 * 126.39688 * 184.86832 * 18 17 16 20 20 H 1.08001 * 120.00180 * 160.37592 * 19 18 17 21 21 C 1.38816 * 120.00033 * 340.37038 * 19 18 17 22 22 N 1.31617 * 119.99745 * 173.49596 * 21 19 18 23 23 Si 1.86792 * 119.99829 * 353.49685 * 21 19 18 24 24 H 1.48503 * 109.46948 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47174 * 299.99717 * 23 21 19 26 26 H 1.48496 * 109.47560 * 60.00021 * 23 21 19 27 27 C 1.45505 * 107.20659 * 4.60122 * 18 17 16 28 28 H 1.09003 * 109.56811 * 86.88280 * 27 18 17 29 29 C 1.46264 * 120.15210 * 179.97438 * 11 9 8 30 30 N 1.31780 * 119.12458 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47424 * 269.98377 * 1 2 3 32 32 H 1.09003 * 109.47591 * 29.98289 * 1 2 3 33 33 H 1.09002 * 109.47001 * 149.98012 * 1 2 3 34 34 H 1.07995 * 120.44920 * 180.02562 * 4 3 2 35 35 H 1.08000 * 120.80076 * 180.25070 * 5 4 3 36 36 H 1.09001 * 109.46956 * 4.71930 * 7 6 5 37 37 H 1.08998 * 109.47300 * 244.72501 * 7 6 5 38 38 H 1.09001 * 109.47293 * 59.99985 * 8 7 6 39 39 H 1.09004 * 109.46948 * 300.00100 * 8 7 6 40 40 H 1.09007 * 109.22918 * 107.44450 * 12 11 9 41 41 H 1.09003 * 109.22861 * 348.08709 * 12 11 9 42 42 H 1.08998 * 109.89643 * 188.74084 * 13 12 11 43 43 H 1.09005 * 109.95416 * 67.66543 * 13 12 11 44 44 H 1.09004 * 110.96150 * 324.41128 * 16 14 13 45 45 H 1.08997 * 110.96369 * 88.11886 * 16 14 13 46 46 H 1.09004 * 110.02154 * 263.40621 * 17 16 14 47 47 H 1.09000 * 109.79267 * 142.11626 * 17 16 14 48 48 H 0.96997 * 120.00440 * 354.94999 * 22 21 19 49 49 H 1.08995 * 109.72089 * 8.80212 * 29 11 9 50 50 H 1.08992 * 109.63107 * 247.73431 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1484 1.1515 0.0000 4 6 3.4711 1.1907 0.0005 5 6 4.1808 0.0000 0.0064 6 6 3.4712 -1.1903 0.0007 7 6 4.1961 -2.5116 0.0013 8 6 3.7156 -3.3563 1.1830 9 6 4.4409 -4.6773 1.1840 10 8 5.2617 -4.9191 0.3245 11 7 4.1782 -5.5895 2.1406 12 6 3.1854 -5.2914 3.1772 13 6 3.7389 -5.6268 4.5734 14 6 4.2601 -7.0535 4.5219 15 1 3.4791 -7.7437 4.2031 16 6 4.9534 -7.5540 5.7990 17 6 5.9055 -8.6428 5.2349 18 7 6.1302 -8.3256 3.8053 19 6 6.8331 -9.0821 2.9059 20 1 6.6800 -8.9418 1.8460 21 6 7.7424 -10.0293 3.3564 22 7 8.3228 -10.8435 2.5006 23 14 8.1422 -10.1481 5.1772 24 1 9.1337 -11.2317 5.3965 25 1 8.7075 -8.8571 5.6451 26 1 6.9030 -10.4505 5.9375 27 6 5.4592 -7.0634 3.5337 28 1 6.1298 -6.2361 3.7660 29 6 4.8798 -6.8729 2.1445 30 7 2.1483 -1.1512 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3634 0.8901 -0.5136 33 1 -0.3633 -0.8898 -0.5142 34 1 3.9905 2.1375 0.0009 35 1 5.2608 -0.0001 0.0110 36 1 5.2684 -2.3376 0.0912 37 1 3.9905 -3.0393 -0.9300 38 1 2.6433 -3.5302 1.0931 39 1 3.9213 -2.8286 2.1143 40 1 2.2879 -5.8826 2.9953 41 1 2.9310 -4.2323 3.1367 42 1 2.9448 -5.5486 5.3158 43 1 4.5506 -4.9443 4.8255 44 1 5.5132 -6.7512 6.2790 45 1 4.2314 -7.9901 6.4894 46 1 5.4452 -9.6263 5.3292 47 1 6.8528 -8.6199 5.7737 48 1 8.0618 -10.8318 1.5665 49 1 5.6801 -6.8568 1.4047 50 1 4.1771 -7.6751 1.9195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042163079.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:22 Heat of formation + Delta-G solvation = 44.442245 kcal Electronic energy + Delta-G solvation = -30163.992742 eV Core-core repulsion = 26192.103263 eV Total energy + Delta-G solvation = -3971.889479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.45569 -40.38435 -38.58323 -35.73433 -35.36940 -33.76317 -33.05251 -32.03630 -31.46172 -29.88601 -28.93886 -28.82531 -26.31063 -24.41957 -23.98210 -23.24809 -22.41243 -21.97887 -20.65724 -19.72511 -18.91156 -17.93283 -17.42670 -17.18335 -16.25509 -15.94828 -15.74260 -15.49909 -15.43058 -15.15935 -14.85306 -14.41312 -14.06492 -13.76303 -13.46369 -13.43262 -13.17836 -13.11682 -12.97963 -12.76042 -12.67393 -12.59426 -12.46744 -12.22173 -11.84030 -11.55409 -11.53303 -11.19201 -11.12898 -10.98880 -10.82743 -10.64385 -10.59705 -10.06662 -9.82666 -9.78339 -9.66166 -9.55111 -9.17919 -9.00825 -8.73025 -8.48569 -7.00747 -6.29014 -3.27102 0.54270 0.70559 2.70221 3.04291 3.37071 3.41655 3.49586 3.53327 3.71507 3.72576 4.06639 4.44983 4.62502 4.65195 4.67168 4.70707 4.79038 4.81372 4.89247 4.96452 5.02396 5.10464 5.14422 5.16616 5.27212 5.34602 5.37627 5.47036 5.49985 5.53192 5.55620 5.70186 5.74694 5.78573 5.79632 5.81662 5.87901 5.96279 6.08263 6.14091 6.21833 6.30024 6.43081 6.56272 6.58982 6.68033 6.76008 6.90473 7.50881 7.74167 7.76013 8.27074 8.35315 9.04053 9.57643 10.25387 11.21478 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.002260 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.265086 B =12388.795752 C =13016.908478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.318 3.682 3 N -0.527 5.527 4 C 0.153 3.847 5 C -0.232 4.232 6 C 0.186 3.814 7 C -0.058 4.058 8 C -0.129 4.129 9 C 0.511 3.489 10 O -0.540 6.540 11 N -0.604 5.604 12 C 0.107 3.893 13 C -0.119 4.119 14 C -0.115 4.115 15 H 0.080 0.920 16 C -0.121 4.121 17 C 0.110 3.890 18 N -0.601 5.601 19 C -0.320 4.320 20 H 0.078 0.922 21 C -0.019 4.019 22 N -0.930 5.930 23 Si 1.074 2.926 24 H -0.302 1.302 25 H -0.298 1.298 26 H -0.285 1.285 27 C 0.157 3.843 28 H 0.029 0.971 29 C 0.116 3.884 30 N -0.516 5.516 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.169 0.831 35 H 0.149 0.851 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.030 0.970 48 H 0.262 0.738 49 H 0.093 0.907 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.976 23.040 0.655 28.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 N -0.242 5.242 4 C -0.013 4.013 5 C -0.254 4.254 6 C 0.040 3.960 7 C -0.096 4.096 8 C -0.169 4.169 9 C 0.299 3.701 10 O -0.417 6.417 11 N -0.338 5.338 12 C -0.017 4.017 13 C -0.158 4.158 14 C -0.135 4.135 15 H 0.098 0.902 16 C -0.159 4.159 17 C -0.015 4.015 18 N -0.328 5.328 19 C -0.448 4.448 20 H 0.096 0.904 21 C -0.219 4.219 22 N -0.571 5.571 23 Si 0.908 3.092 24 H -0.230 1.230 25 H -0.226 1.226 26 H -0.212 1.212 27 C 0.048 3.952 28 H 0.047 0.953 29 C -0.007 4.007 30 N -0.232 5.232 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.186 0.814 35 H 0.167 0.833 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.048 0.952 48 H 0.072 0.928 49 H 0.112 0.888 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.507 22.036 1.199 26.972 hybrid contribution 0.045 0.866 -1.003 1.325 sum -15.463 22.901 0.197 27.633 Atomic orbital electron populations 1.20573 0.85687 1.04205 1.03937 1.23290 0.98215 0.83349 0.90040 1.68268 1.10225 1.30539 1.15215 1.23242 0.89665 0.98672 0.89716 1.22821 1.03185 0.94109 1.05260 1.21778 0.89553 0.95929 0.88758 1.20390 0.99434 0.89659 1.00107 1.21567 1.02206 0.93495 0.99630 1.20554 0.82721 0.85490 0.81338 1.90722 1.34584 1.79077 1.37307 1.47872 1.41144 1.17270 1.27470 1.21747 0.91023 1.01091 0.87806 1.21783 1.01090 0.97182 0.95722 1.22321 0.98335 0.95423 0.97417 0.90170 1.22421 0.98310 0.98699 0.96489 1.22424 0.96132 0.96866 0.86042 1.44457 1.61538 1.20729 1.06086 1.20157 1.18806 1.16993 0.88816 0.90445 1.25974 0.94124 0.95113 1.06656 1.70879 1.43188 1.38542 1.04533 0.83808 0.75438 0.74673 0.75300 1.23049 1.22621 1.21192 1.20956 0.91566 0.90267 0.92396 0.95317 1.21341 0.96811 0.82711 0.99797 1.68093 1.09576 1.30522 1.14982 0.89567 0.89673 0.89527 0.81424 0.83304 0.88759 0.88322 0.87835 0.89111 0.91519 0.90152 0.90631 0.91276 0.91577 0.91402 0.93285 0.95233 0.92810 0.88833 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.32 36.00 0.37 -0.18 16 2 C 0.32 3.07 7.64 -157.20 -1.20 1.87 16 3 N -0.53 -5.11 10.34 -10.72 -0.11 -5.23 16 4 C 0.15 1.18 11.31 -17.20 -0.19 0.99 16 5 C -0.23 -1.82 9.80 -39.32 -0.39 -2.21 16 6 C 0.19 1.79 6.20 -82.24 -0.51 1.28 16 7 C -0.06 -0.58 4.94 -27.88 -0.14 -0.71 16 8 C -0.13 -1.32 3.90 -27.88 -0.11 -1.43 16 9 C 0.51 7.54 7.67 -10.99 -0.08 7.46 16 10 O -0.54 -10.19 15.35 5.56 0.09 -10.11 16 11 N -0.60 -8.90 2.98 -174.03 -0.52 -9.42 16 12 C 0.11 1.14 6.21 -3.53 -0.02 1.12 16 13 C -0.12 -1.34 5.76 -26.79 -0.15 -1.50 16 14 C -0.12 -1.76 2.57 -89.51 -0.23 -1.99 16 15 H 0.08 1.25 8.12 -51.93 -0.42 0.83 16 16 C -0.12 -1.92 6.57 -25.18 -0.17 -2.09 16 17 C 0.11 2.33 4.63 -1.94 -0.01 2.32 16 18 N -0.60 -14.55 3.22 -162.96 -0.52 -15.08 16 19 C -0.32 -9.16 10.22 -15.06 -0.15 -9.32 16 20 H 0.08 2.35 7.66 -52.49 -0.40 1.95 16 21 C -0.02 -0.57 5.50 -17.43 -0.10 -0.66 16 22 N -0.93 -29.58 13.70 55.49 0.76 -28.82 16 23 Si 1.07 27.03 24.62 -169.99 -4.18 22.84 16 24 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 25 H -0.30 -7.30 6.91 56.52 0.39 -6.90 16 26 H -0.28 -6.46 5.31 56.52 0.30 -6.16 16 27 C 0.16 3.10 2.80 -67.85 -0.19 2.91 16 28 H 0.03 0.62 7.94 -51.93 -0.41 0.20 16 29 C 0.12 2.19 5.50 -4.82 -0.03 2.17 16 30 N -0.52 -5.37 9.94 -6.99 -0.07 -5.44 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 35 H 0.15 0.82 8.01 -52.49 -0.42 0.40 16 36 H 0.09 0.91 7.90 -51.93 -0.41 0.50 16 37 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 38 H 0.10 0.98 7.83 -51.93 -0.41 0.57 16 39 H 0.09 0.80 7.55 -51.93 -0.39 0.40 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.66 5.84 -51.93 -0.30 0.35 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.80 7.99 -51.93 -0.41 0.39 16 44 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 1.08 6.87 -51.93 -0.36 0.72 16 47 H 0.03 0.67 4.01 -51.93 -0.21 0.46 16 48 H 0.26 8.26 8.73 -40.82 -0.36 7.91 16 49 H 0.09 2.08 6.85 -51.93 -0.36 1.72 16 50 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -35.86 387.62 -10.01 -45.87 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.99 Total: -0.51 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -3.30 Total: 0.04 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -0.46 Total: -63.98 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 27.03 SS G_CDS: -4.18 Total: 22.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.86 -10.01 -45.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042163079.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.316 kcal (2) G-P(sol) polarization free energy of solvation -35.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds