Wall clock time and date at job start Wed Apr 1 2020 03:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31812 * 119.11996 * 2 1 4 4 C 1.32325 * 120.81666 * 179.97438 * 3 2 1 5 5 C 1.38620 * 119.10007 * 359.74663 * 4 3 2 6 6 C 1.38574 * 118.40069 * 0.51133 * 5 4 3 7 7 C 1.50703 * 120.44864 * 179.76348 * 6 5 4 8 8 C 1.52995 * 109.47308 * 124.72152 * 7 6 5 9 9 C 1.50703 * 109.47308 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99918 * 0.02562 * 9 8 7 11 11 N 1.34769 * 119.99921 * 179.97438 * 9 8 7 12 12 C 1.46596 * 119.75578 * 0.02562 * 11 9 8 13 13 C 1.53883 * 110.71280 * 227.76418 * 12 11 9 14 14 C 1.51984 * 107.28902 * 308.18810 * 13 12 11 15 15 H 1.08991 * 111.01382 * 303.48507 * 14 13 12 16 16 C 1.53692 * 115.61041 * 175.75089 * 14 13 12 17 17 C 1.55248 * 101.71775 * 206.06214 * 16 14 13 18 18 N 1.48156 * 107.06939 * 22.82353 * 17 16 14 19 19 C 1.36934 * 126.39688 * 184.86832 * 18 17 16 20 20 H 1.08001 * 120.00180 * 160.37592 * 19 18 17 21 21 C 1.38816 * 120.00033 * 340.37038 * 19 18 17 22 22 N 1.31617 * 119.99745 * 173.49596 * 21 19 18 23 23 Si 1.86792 * 119.99829 * 353.49685 * 21 19 18 24 24 H 1.48503 * 109.46948 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47174 * 299.99717 * 23 21 19 26 26 H 1.48496 * 109.47560 * 60.00021 * 23 21 19 27 27 C 1.45505 * 107.20659 * 4.60122 * 18 17 16 28 28 H 1.09003 * 109.56811 * 86.88280 * 27 18 17 29 29 C 1.46264 * 120.15210 * 179.97438 * 11 9 8 30 30 N 1.31780 * 119.12458 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47424 * 269.98377 * 1 2 3 32 32 H 1.09003 * 109.47591 * 29.98289 * 1 2 3 33 33 H 1.09002 * 109.47001 * 149.98012 * 1 2 3 34 34 H 1.07995 * 120.44920 * 180.02562 * 4 3 2 35 35 H 1.08000 * 120.80076 * 180.25070 * 5 4 3 36 36 H 1.09001 * 109.46956 * 4.71930 * 7 6 5 37 37 H 1.08998 * 109.47300 * 244.72501 * 7 6 5 38 38 H 1.09001 * 109.47293 * 59.99985 * 8 7 6 39 39 H 1.09004 * 109.46948 * 300.00100 * 8 7 6 40 40 H 1.09007 * 109.22918 * 107.44450 * 12 11 9 41 41 H 1.09003 * 109.22861 * 348.08709 * 12 11 9 42 42 H 1.08998 * 109.89643 * 188.74084 * 13 12 11 43 43 H 1.09005 * 109.95416 * 67.66543 * 13 12 11 44 44 H 1.09004 * 110.96150 * 324.41128 * 16 14 13 45 45 H 1.08997 * 110.96369 * 88.11886 * 16 14 13 46 46 H 1.09004 * 110.02154 * 263.40621 * 17 16 14 47 47 H 1.09000 * 109.79267 * 142.11626 * 17 16 14 48 48 H 0.96997 * 120.00440 * 354.94999 * 22 21 19 49 49 H 1.08995 * 109.72089 * 8.80212 * 29 11 9 50 50 H 1.08992 * 109.63107 * 247.73431 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1484 1.1515 0.0000 4 6 3.4711 1.1907 0.0005 5 6 4.1808 0.0000 0.0064 6 6 3.4712 -1.1903 0.0007 7 6 4.1961 -2.5116 0.0013 8 6 3.7156 -3.3563 1.1830 9 6 4.4409 -4.6773 1.1840 10 8 5.2617 -4.9191 0.3245 11 7 4.1782 -5.5895 2.1406 12 6 3.1854 -5.2914 3.1772 13 6 3.7389 -5.6268 4.5734 14 6 4.2601 -7.0535 4.5219 15 1 3.4791 -7.7437 4.2031 16 6 4.9534 -7.5540 5.7990 17 6 5.9055 -8.6428 5.2349 18 7 6.1302 -8.3256 3.8053 19 6 6.8331 -9.0821 2.9059 20 1 6.6800 -8.9418 1.8460 21 6 7.7424 -10.0293 3.3564 22 7 8.3228 -10.8435 2.5006 23 14 8.1422 -10.1481 5.1772 24 1 9.1337 -11.2317 5.3965 25 1 8.7075 -8.8571 5.6451 26 1 6.9030 -10.4505 5.9375 27 6 5.4592 -7.0634 3.5337 28 1 6.1298 -6.2361 3.7660 29 6 4.8798 -6.8729 2.1445 30 7 2.1483 -1.1512 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3634 0.8901 -0.5136 33 1 -0.3633 -0.8898 -0.5142 34 1 3.9905 2.1375 0.0009 35 1 5.2608 -0.0001 0.0110 36 1 5.2684 -2.3376 0.0912 37 1 3.9905 -3.0393 -0.9300 38 1 2.6433 -3.5302 1.0931 39 1 3.9213 -2.8286 2.1143 40 1 2.2879 -5.8826 2.9953 41 1 2.9310 -4.2323 3.1367 42 1 2.9448 -5.5486 5.3158 43 1 4.5506 -4.9443 4.8255 44 1 5.5132 -6.7512 6.2790 45 1 4.2314 -7.9901 6.4894 46 1 5.4452 -9.6263 5.3292 47 1 6.8528 -8.6199 5.7737 48 1 8.0618 -10.8318 1.5665 49 1 5.6801 -6.8568 1.4047 50 1 4.1771 -7.6751 1.9195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042163079.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:21 Heat of formation + Delta-G solvation = 19.529815 kcal Electronic energy + Delta-G solvation = -30165.073027 eV Core-core repulsion = 26192.103263 eV Total energy + Delta-G solvation = -3972.969763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.12001 -41.62290 -39.96419 -37.10945 -36.17273 -34.89297 -34.35998 -33.19663 -32.85955 -31.18838 -30.43760 -29.42378 -27.27552 -26.05797 -25.30155 -24.01233 -23.63946 -22.74740 -22.21105 -21.23513 -20.04609 -19.40469 -18.58631 -18.34146 -17.13274 -17.06860 -16.88583 -16.81711 -16.34869 -16.14488 -16.08480 -15.68265 -15.30532 -14.93595 -14.80633 -14.71766 -14.45361 -14.20249 -13.96992 -13.86036 -13.65210 -13.53518 -13.33198 -13.19412 -13.16363 -12.99636 -12.80377 -12.44787 -12.33744 -12.04614 -11.97254 -11.81452 -11.59107 -11.52234 -11.35534 -11.27787 -10.99095 -10.90983 -10.64343 -10.34587 -10.22569 -9.75102 -9.07411 -8.66861 -5.55656 -0.08636 0.07239 1.37921 1.48255 1.53585 1.70661 1.88647 2.53930 2.72481 2.89834 3.12119 3.14427 3.22611 3.35040 3.58582 3.69462 3.80910 3.84778 3.98740 4.01368 4.11152 4.14225 4.17550 4.21042 4.23160 4.35122 4.47518 4.49048 4.53294 4.60597 4.63568 4.72286 4.74124 4.75231 4.81424 4.82584 4.90196 4.94583 5.05237 5.06686 5.09399 5.11738 5.16277 5.21893 5.44175 5.49924 5.50943 5.64913 6.05274 6.08870 6.36055 6.79171 7.09090 7.12056 7.43767 8.09945 8.85082 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.002260 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.265086 B =12388.795752 C =13016.908478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.303 3.697 3 N -0.544 5.544 4 C 0.151 3.849 5 C -0.230 4.230 6 C 0.173 3.827 7 C -0.053 4.053 8 C -0.111 4.111 9 C 0.504 3.496 10 O -0.593 6.593 11 N -0.603 5.603 12 C 0.098 3.902 13 C -0.110 4.110 14 C -0.098 4.098 15 H 0.079 0.921 16 C -0.107 4.107 17 C 0.094 3.906 18 N -0.624 5.624 19 C -0.305 4.305 20 H 0.037 0.963 21 C -0.082 4.082 22 N -0.968 5.968 23 Si 1.115 2.885 24 H -0.314 1.314 25 H -0.288 1.288 26 H -0.241 1.241 27 C 0.144 3.856 28 H 0.017 0.983 29 C 0.128 3.872 30 N -0.533 5.533 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.200 0.800 35 H 0.170 0.830 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.042 0.958 47 H 0.024 0.976 48 H 0.244 0.756 49 H 0.042 0.958 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.878 26.239 4.177 32.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.036 3.964 3 N -0.260 5.260 4 C -0.014 4.014 5 C -0.252 4.252 6 C 0.027 3.973 7 C -0.091 4.091 8 C -0.151 4.151 9 C 0.294 3.706 10 O -0.474 6.474 11 N -0.336 5.336 12 C -0.023 4.023 13 C -0.148 4.148 14 C -0.118 4.118 15 H 0.098 0.902 16 C -0.145 4.145 17 C -0.030 4.030 18 N -0.351 5.351 19 C -0.433 4.433 20 H 0.055 0.945 21 C -0.274 4.274 22 N -0.612 5.612 23 Si 0.942 3.058 24 H -0.243 1.243 25 H -0.215 1.215 26 H -0.165 1.165 27 C 0.036 3.964 28 H 0.034 0.966 29 C 0.004 3.996 30 N -0.249 5.249 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.217 0.783 35 H 0.188 0.812 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.101 0.899 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.123 0.877 46 H 0.060 0.940 47 H 0.042 0.958 48 H 0.053 0.947 49 H 0.061 0.939 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.493 25.289 4.753 31.688 hybrid contribution 0.931 -0.045 -2.247 2.433 sum -17.562 25.244 2.506 30.854 Atomic orbital electron populations 1.20653 0.83966 1.04676 1.04862 1.23822 0.99454 0.83202 0.89920 1.68340 1.11237 1.30641 1.15760 1.23817 0.89258 0.99951 0.88422 1.23064 1.04297 0.93499 1.04290 1.21724 0.89703 0.96037 0.89826 1.20275 0.99573 0.90023 0.99264 1.21523 1.02082 0.90521 1.00946 1.21468 0.82102 0.86737 0.80245 1.90703 1.37082 1.80231 1.39375 1.47978 1.41381 1.15447 1.28766 1.22151 0.90071 1.03751 0.86286 1.21813 1.02413 0.93732 0.96876 1.22278 0.95884 0.98494 0.95143 0.90243 1.22436 0.97786 0.97381 0.96886 1.22637 0.97352 0.98917 0.84051 1.44576 1.61498 1.21974 1.07086 1.19969 1.18533 1.16588 0.88233 0.94503 1.27382 0.94497 0.95153 1.10376 1.70992 1.45321 1.40949 1.03947 0.83364 0.76695 0.74654 0.71051 1.24349 1.21534 1.16538 1.21180 0.93190 0.87738 0.94263 0.96586 1.20870 0.95496 0.84994 0.98257 1.68082 1.09932 1.31108 1.15766 0.88307 0.88979 0.89249 0.78292 0.81206 0.88844 0.90180 0.86283 0.86435 0.89916 0.86475 0.86221 0.91089 0.89779 0.87654 0.94042 0.95819 0.94664 0.93949 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.32 71.23 0.74 -0.18 16 2 C 0.30 5.29 7.64 138.75 1.06 6.35 16 3 N -0.54 -9.43 10.34 -187.84 -1.94 -11.37 16 4 C 0.15 1.95 11.31 84.71 0.96 2.91 16 5 C -0.23 -3.11 9.80 22.44 0.22 -2.89 16 6 C 0.17 3.05 6.20 42.56 0.26 3.31 16 7 C -0.05 -1.02 4.94 29.85 0.15 -0.88 16 8 C -0.11 -2.04 3.90 29.85 0.12 -1.92 16 9 C 0.50 14.85 7.67 87.66 0.67 15.52 16 10 O -0.59 -23.78 15.35 -3.04 -0.05 -23.83 16 11 N -0.60 -17.28 2.98 -822.89 -2.45 -19.73 16 12 C 0.10 1.70 6.21 86.66 0.54 2.23 16 13 C -0.11 -1.88 5.76 30.56 0.18 -1.71 16 14 C -0.10 -2.66 2.57 -10.07 -0.03 -2.68 16 15 H 0.08 2.20 8.12 -2.39 -0.02 2.18 16 16 C -0.11 -2.89 6.57 31.60 0.21 -2.69 16 17 C 0.09 3.79 4.63 86.83 0.40 4.19 16 18 N -0.62 -30.65 3.22 -669.49 -2.15 -32.80 16 19 C -0.30 -18.38 10.22 84.03 0.86 -17.52 16 20 H 0.04 2.46 7.66 -2.91 -0.02 2.44 16 21 C -0.08 -5.09 5.50 84.86 0.47 -4.63 16 22 N -0.97 -65.02 13.70 21.65 0.30 -64.72 16 23 Si 1.12 55.15 24.62 68.60 1.69 56.84 16 24 H -0.31 -16.04 7.11 99.48 0.71 -15.33 16 25 H -0.29 -13.58 6.91 99.48 0.69 -12.89 16 26 H -0.24 -10.16 5.31 99.48 0.53 -9.64 16 27 C 0.14 5.69 2.80 45.58 0.13 5.82 16 28 H 0.02 0.70 7.94 -2.39 -0.02 0.68 16 29 C 0.13 5.08 5.50 86.01 0.47 5.55 16 30 N -0.53 -10.16 9.94 -176.03 -1.75 -11.91 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.20 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.17 1.46 8.01 -2.91 -0.02 1.43 16 36 H 0.09 1.79 7.90 -2.39 -0.02 1.77 16 37 H 0.08 1.83 8.10 -2.39 -0.02 1.81 16 38 H 0.12 1.89 7.83 -2.39 -0.02 1.87 16 39 H 0.12 1.59 7.55 -2.38 -0.02 1.57 16 40 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.12 1.24 5.84 -2.39 -0.01 1.23 16 42 H 0.12 1.17 8.14 -2.39 -0.02 1.16 16 43 H 0.07 1.26 7.99 -2.38 -0.02 1.24 16 44 H 0.08 2.02 8.13 -2.38 -0.02 2.00 16 45 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.04 1.73 6.87 -2.39 -0.02 1.71 16 47 H 0.02 1.02 4.01 -2.39 -0.01 1.01 16 48 H 0.24 16.64 8.73 -92.71 -0.81 15.83 16 49 H 0.04 2.08 6.85 -2.39 -0.02 2.06 16 50 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -87.19 387.62 1.74 -85.45 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.70 Total: 11.27 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 7.40 Total: 10.80 kcal Atomic # 7 Polarization: -132.53 SS G_CDS: -8.00 Total: -140.53 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.05 Total: -23.83 kcal Atomic # 14 Polarization: 55.15 SS G_CDS: 1.69 Total: 56.84 kcal Total: -87.19 1.74 -85.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042163079.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.982 kcal (2) G-P(sol) polarization free energy of solvation -87.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds