Wall clock time and date at job start Wed Apr 1 2020 03:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.31813 * 119.12551 * 2 1 4 4 C 1.32317 * 120.81656 * 179.97438 * 3 2 1 5 5 C 1.38616 * 119.10544 * 359.74763 * 4 3 2 6 6 C 1.38579 * 118.39980 * 0.51071 * 5 4 3 7 7 C 1.50699 * 120.44813 * 179.76079 * 6 5 4 8 8 C 1.52996 * 109.47419 * 124.72526 * 7 6 5 9 9 C 1.50697 * 109.47748 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99578 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00035 * 179.97438 * 9 8 7 12 12 C 1.47148 * 121.22122 * 0.02562 * 11 9 8 13 13 C 1.52839 * 108.02375 * 122.73100 * 12 11 9 14 14 C 1.53087 * 110.58219 * 57.31097 * 13 12 11 15 15 H 1.09007 * 112.49227 * 71.39494 * 14 13 12 16 16 C 1.56027 * 106.38985 * 195.44822 * 14 13 12 17 17 C 1.54499 * 102.61285 * 78.38557 * 16 14 13 18 18 N 1.47431 * 107.14673 * 22.85292 * 17 16 14 19 19 C 1.36940 * 126.05506 * 181.63163 * 18 17 16 20 20 H 1.08004 * 119.99350 * 179.97438 * 19 18 17 21 21 C 1.38806 * 120.00569 * 359.97438 * 19 18 17 22 22 N 1.31620 * 119.99722 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00305 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46991 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47387 * 119.99554 * 23 21 19 26 26 H 1.48504 * 109.47073 * 239.99543 * 23 21 19 27 27 C 1.46464 * 107.88237 * 1.61192 * 18 17 16 28 28 H 1.09000 * 108.42298 * 89.91235 * 27 18 17 29 29 C 1.46763 * 121.22031 * 179.97438 * 11 9 8 30 30 N 1.31788 * 119.12192 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47582 * 269.98371 * 1 2 3 32 32 H 1.09006 * 109.46999 * 29.98413 * 1 2 3 33 33 H 1.09001 * 109.47361 * 149.97978 * 1 2 3 34 34 H 1.08006 * 120.44792 * 180.02562 * 4 3 2 35 35 H 1.08004 * 120.80497 * 180.25244 * 5 4 3 36 36 H 1.09002 * 109.47036 * 4.72007 * 7 6 5 37 37 H 1.09009 * 109.46896 * 244.72268 * 7 6 5 38 38 H 1.09005 * 109.47114 * 59.99323 * 8 7 6 39 39 H 1.09001 * 109.46526 * 300.00299 * 8 7 6 40 40 H 1.09002 * 109.76053 * 3.08344 * 12 11 9 41 41 H 1.08997 * 109.76014 * 242.37839 * 12 11 9 42 42 H 1.08999 * 109.25097 * 177.59379 * 13 12 11 43 43 H 1.09001 * 109.25575 * 297.06633 * 13 12 11 44 44 H 1.09000 * 110.78659 * 196.66964 * 16 14 13 45 45 H 1.09002 * 110.77792 * 319.91572 * 16 14 13 46 46 H 1.09004 * 109.90030 * 142.23644 * 17 16 14 47 47 H 1.09001 * 109.90116 * 263.29263 * 17 16 14 48 48 H 0.97003 * 119.99909 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.18233 * 112.19662 * 29 11 9 50 50 H 1.09004 * 109.19963 * 352.83401 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1905 0.0005 5 6 4.1808 -0.0002 0.0064 6 6 3.4711 -1.1905 0.0006 7 6 4.1960 -2.5117 0.0012 8 6 3.7155 -3.3566 1.1828 9 6 4.4398 -4.6780 1.1831 10 8 5.2601 -4.9201 0.3231 11 7 4.1769 -5.5904 2.1395 12 6 3.1875 -5.3246 3.1958 13 6 2.1325 -6.4293 3.1444 14 6 2.7848 -7.8045 3.3081 15 1 3.1413 -7.9789 4.3233 16 6 1.7235 -8.8525 2.8501 17 6 1.8149 -8.7743 1.3098 18 7 3.1465 -8.2339 0.9803 19 6 3.6229 -7.9758 -0.2773 20 1 4.6187 -7.5779 -0.4063 21 6 2.8262 -8.2253 -1.3862 22 7 1.6129 -8.7106 -1.2290 23 14 3.4759 -7.8724 -3.1017 24 1 4.8569 -7.3349 -3.0070 25 1 3.4860 -9.1276 -3.8951 26 1 2.6009 -6.8736 -3.7666 27 6 3.8692 -8.0218 2.2364 28 1 4.4147 -8.9340 2.4783 29 6 4.8660 -6.8859 2.1651 30 7 2.1483 -1.1513 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3634 -0.8898 -0.5141 34 1 3.9907 2.1374 0.0009 35 1 5.2608 -0.0003 0.0110 36 1 5.2683 -2.3378 0.0911 37 1 3.9902 -3.0394 -0.9302 38 1 2.6431 -3.5304 1.0929 39 1 3.9211 -2.8288 2.1141 40 1 2.7163 -4.3568 3.0244 41 1 3.6778 -5.3284 4.1693 42 1 1.4117 -6.2755 3.9475 43 1 1.6162 -6.3889 2.1853 44 1 1.9871 -9.8496 3.2030 45 1 0.7287 -8.5720 3.1961 46 1 1.7017 -9.7697 0.8803 47 1 1.0379 -8.1138 0.9251 48 1 1.0562 -8.8854 -2.0039 49 1 5.5199 -6.9267 3.0363 50 1 5.4657 -6.9909 1.2609 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042163080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:26 Heat of formation + Delta-G solvation = 37.716940 kcal Electronic energy + Delta-G solvation = -31311.120695 eV Core-core repulsion = 27338.939585 eV Total energy + Delta-G solvation = -3972.181110 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.23232 -39.93349 -38.13382 -35.19254 -34.90538 -33.54838 -32.79189 -31.76866 -30.96852 -29.19669 -28.62142 -28.35136 -26.00289 -24.57579 -23.80606 -23.04161 -22.50108 -21.75692 -19.95447 -19.47714 -18.17829 -17.69932 -17.03225 -16.52637 -16.04334 -15.55383 -15.41104 -15.29907 -15.04719 -14.83951 -14.28915 -13.91984 -13.89895 -13.64135 -13.33032 -13.09667 -12.98223 -12.69858 -12.60698 -12.45187 -12.40045 -11.99350 -11.93660 -11.55837 -11.41568 -11.21403 -11.17099 -10.94429 -10.87953 -10.74828 -10.68261 -10.57736 -10.04713 -9.82702 -9.79634 -9.63369 -9.53753 -9.46398 -9.33626 -9.19660 -8.49868 -8.07526 -6.72721 -5.60638 -2.92314 0.74991 0.92787 3.14270 3.44588 3.48857 3.55700 3.60601 3.61523 3.77065 3.94113 4.30392 4.61325 4.75718 4.87891 4.97301 5.04767 5.12955 5.15051 5.18099 5.25666 5.32959 5.37906 5.39832 5.52878 5.54172 5.59507 5.72583 5.72867 5.76384 5.77886 5.83711 5.99759 6.04816 6.08899 6.10414 6.16909 6.29454 6.31286 6.32488 6.47269 6.52276 6.65177 6.77476 6.90160 6.97495 7.12902 7.65585 7.68346 7.93637 7.95836 7.98793 8.33955 8.71801 9.33238 9.94088 10.58374 11.51845 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010466 B = 0.003593 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.661084 B = 7791.952296 C = 8666.228095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.319 3.681 3 N -0.529 5.529 4 C 0.150 3.850 5 C -0.235 4.235 6 C 0.190 3.810 7 C -0.058 4.058 8 C -0.127 4.127 9 C 0.523 3.477 10 O -0.538 6.538 11 N -0.594 5.594 12 C 0.111 3.889 13 C -0.123 4.123 14 C -0.101 4.101 15 H 0.074 0.926 16 C -0.144 4.144 17 C 0.179 3.821 18 N -0.588 5.588 19 C -0.211 4.211 20 H 0.082 0.918 21 C -0.008 4.008 22 N -0.925 5.925 23 Si 0.903 3.097 24 H -0.277 1.277 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.155 3.845 28 H 0.025 0.975 29 C 0.113 3.887 30 N -0.513 5.513 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.167 0.833 35 H 0.148 0.852 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.040 0.960 47 H 0.045 0.955 48 H 0.248 0.752 49 H 0.052 0.948 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 15.665 10.652 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 N -0.245 5.245 4 C -0.016 4.016 5 C -0.257 4.257 6 C 0.043 3.957 7 C -0.096 4.096 8 C -0.167 4.167 9 C 0.310 3.690 10 O -0.415 6.415 11 N -0.327 5.327 12 C -0.012 4.012 13 C -0.161 4.161 14 C -0.121 4.121 15 H 0.093 0.907 16 C -0.183 4.183 17 C 0.054 3.946 18 N -0.313 5.313 19 C -0.339 4.339 20 H 0.100 0.900 21 C -0.203 4.203 22 N -0.574 5.574 23 Si 0.734 3.266 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.220 1.220 27 C 0.046 3.954 28 H 0.042 0.958 29 C -0.010 4.010 30 N -0.228 5.228 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.184 0.816 35 H 0.165 0.835 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.071 0.929 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.695 15.515 9.933 18.435 hybrid contribution 1.089 0.133 -0.909 1.425 sum 1.784 15.649 9.023 18.152 Atomic orbital electron populations 1.20581 0.85718 1.04271 1.03903 1.23304 0.98236 0.83317 0.89932 1.68254 1.10168 1.30591 1.15455 1.23194 0.89737 0.98535 0.90084 1.22787 1.03005 0.94145 1.05746 1.21841 0.89551 0.95981 0.88296 1.20400 0.98965 0.89592 1.00680 1.21506 1.02681 0.93659 0.98856 1.20250 0.82695 0.85366 0.80647 1.90684 1.35340 1.79226 1.36286 1.47790 1.41036 1.16222 1.27680 1.21641 0.90218 0.98956 0.90394 1.21833 0.97250 0.93998 1.03058 1.22358 0.97119 0.95005 0.97587 0.90725 1.23169 0.97542 0.97518 1.00025 1.21197 0.87715 0.98487 0.87185 1.44288 1.12600 1.74570 0.99878 1.19092 0.98607 1.35197 0.81041 0.89999 1.24683 0.96342 1.01727 0.97554 1.69968 1.08529 1.50853 1.28051 0.86142 0.78319 0.77212 0.84935 1.20221 1.22067 1.22031 1.20681 0.92140 0.94471 0.88108 0.95762 1.21407 0.95008 0.82330 1.02265 1.68150 1.09652 1.30402 1.14571 0.89598 0.89758 0.89350 0.81597 0.83468 0.89033 0.88074 0.87827 0.89817 0.90515 0.91954 0.92117 0.90039 0.92810 0.92336 0.94180 0.93714 0.94142 0.92939 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.32 36.00 0.37 -0.45 16 2 C 0.32 4.01 7.64 -157.19 -1.20 2.81 16 3 N -0.53 -6.34 10.33 -10.72 -0.11 -6.46 16 4 C 0.15 1.47 11.31 -17.20 -0.19 1.27 16 5 C -0.23 -2.37 9.80 -39.32 -0.39 -2.75 16 6 C 0.19 2.41 6.20 -82.25 -0.51 1.90 16 7 C -0.06 -0.79 4.94 -27.89 -0.14 -0.93 16 8 C -0.13 -1.78 3.93 -27.89 -0.11 -1.89 16 9 C 0.52 9.43 7.72 -10.99 -0.08 9.35 16 10 O -0.54 -11.74 15.44 5.55 0.09 -11.65 16 11 N -0.59 -10.13 2.97 -174.07 -0.52 -10.64 16 12 C 0.11 1.50 6.35 -3.77 -0.02 1.47 16 13 C -0.12 -1.87 5.04 -26.77 -0.14 -2.00 16 14 C -0.10 -1.64 3.68 -88.43 -0.33 -1.97 16 15 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 16 C -0.14 -2.59 6.32 -24.32 -0.15 -2.75 16 17 C 0.18 4.25 4.61 -2.75 -0.01 4.24 16 18 N -0.59 -14.51 3.20 -164.41 -0.53 -15.03 16 19 C -0.21 -5.91 9.70 -15.06 -0.15 -6.05 16 20 H 0.08 2.36 6.51 -52.48 -0.34 2.01 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 22 N -0.93 -27.59 10.38 55.49 0.58 -27.02 16 23 Si 0.90 23.54 29.55 -169.99 -5.02 18.51 16 24 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 26 H -0.29 -7.73 7.11 56.52 0.40 -7.32 16 27 C 0.15 3.05 2.97 -68.29 -0.20 2.85 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 C 0.11 2.09 5.68 -4.76 -0.03 2.06 16 30 N -0.51 -7.16 9.94 -6.99 -0.07 -7.23 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.15 1.08 8.01 -52.48 -0.42 0.66 16 36 H 0.09 1.11 7.90 -51.93 -0.41 0.70 16 37 H 0.10 1.62 8.10 -51.92 -0.42 1.20 16 38 H 0.10 1.55 7.63 -51.93 -0.40 1.16 16 39 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16 40 H 0.08 0.90 6.02 -51.93 -0.31 0.59 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.56 6.85 -51.93 -0.36 1.20 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 0.95 7.98 -51.93 -0.41 0.54 16 46 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16 47 H 0.04 1.19 7.05 -51.93 -0.37 0.82 16 48 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.09 2.06 5.53 -51.93 -0.29 1.77 16 LS Contribution 391.54 15.07 5.90 5.90 Total: -1.00 -34.63 391.54 -10.95 -45.58 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.89 Total: 1.19 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -3.37 Total: 6.85 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -0.65 Total: -66.38 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.02 Total: 18.51 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.63 -10.95 -45.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042163080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.300 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds