Wall clock time and date at job start Wed Apr 1 2020 03:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.31813 * 119.12551 * 2 1 4 4 C 1.32317 * 120.81656 * 179.97438 * 3 2 1 5 5 C 1.38616 * 119.10544 * 359.74763 * 4 3 2 6 6 C 1.38579 * 118.39980 * 0.51071 * 5 4 3 7 7 C 1.50699 * 120.44813 * 179.76079 * 6 5 4 8 8 C 1.52996 * 109.47419 * 124.72526 * 7 6 5 9 9 C 1.50697 * 109.47748 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99578 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00035 * 179.97438 * 9 8 7 12 12 C 1.47148 * 121.22122 * 0.02562 * 11 9 8 13 13 C 1.52839 * 108.02375 * 122.73100 * 12 11 9 14 14 C 1.53087 * 110.58219 * 57.31097 * 13 12 11 15 15 H 1.09007 * 112.49227 * 71.39494 * 14 13 12 16 16 C 1.56027 * 106.38985 * 195.44822 * 14 13 12 17 17 C 1.54499 * 102.61285 * 78.38557 * 16 14 13 18 18 N 1.47431 * 107.14673 * 22.85292 * 17 16 14 19 19 C 1.36940 * 126.05506 * 181.63163 * 18 17 16 20 20 H 1.08004 * 119.99350 * 179.97438 * 19 18 17 21 21 C 1.38806 * 120.00569 * 359.97438 * 19 18 17 22 22 N 1.31620 * 119.99722 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00305 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46991 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47387 * 119.99554 * 23 21 19 26 26 H 1.48504 * 109.47073 * 239.99543 * 23 21 19 27 27 C 1.46464 * 107.88237 * 1.61192 * 18 17 16 28 28 H 1.09000 * 108.42298 * 89.91235 * 27 18 17 29 29 C 1.46763 * 121.22031 * 179.97438 * 11 9 8 30 30 N 1.31788 * 119.12192 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47582 * 269.98371 * 1 2 3 32 32 H 1.09006 * 109.46999 * 29.98413 * 1 2 3 33 33 H 1.09001 * 109.47361 * 149.97978 * 1 2 3 34 34 H 1.08006 * 120.44792 * 180.02562 * 4 3 2 35 35 H 1.08004 * 120.80497 * 180.25244 * 5 4 3 36 36 H 1.09002 * 109.47036 * 4.72007 * 7 6 5 37 37 H 1.09009 * 109.46896 * 244.72268 * 7 6 5 38 38 H 1.09005 * 109.47114 * 59.99323 * 8 7 6 39 39 H 1.09001 * 109.46526 * 300.00299 * 8 7 6 40 40 H 1.09002 * 109.76053 * 3.08344 * 12 11 9 41 41 H 1.08997 * 109.76014 * 242.37839 * 12 11 9 42 42 H 1.08999 * 109.25097 * 177.59379 * 13 12 11 43 43 H 1.09001 * 109.25575 * 297.06633 * 13 12 11 44 44 H 1.09000 * 110.78659 * 196.66964 * 16 14 13 45 45 H 1.09002 * 110.77792 * 319.91572 * 16 14 13 46 46 H 1.09004 * 109.90030 * 142.23644 * 17 16 14 47 47 H 1.09001 * 109.90116 * 263.29263 * 17 16 14 48 48 H 0.97003 * 119.99909 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.18233 * 112.19662 * 29 11 9 50 50 H 1.09004 * 109.19963 * 352.83401 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1905 0.0005 5 6 4.1808 -0.0002 0.0064 6 6 3.4711 -1.1905 0.0006 7 6 4.1960 -2.5117 0.0012 8 6 3.7155 -3.3566 1.1828 9 6 4.4398 -4.6780 1.1831 10 8 5.2601 -4.9201 0.3231 11 7 4.1769 -5.5904 2.1395 12 6 3.1875 -5.3246 3.1958 13 6 2.1325 -6.4293 3.1444 14 6 2.7848 -7.8045 3.3081 15 1 3.1413 -7.9789 4.3233 16 6 1.7235 -8.8525 2.8501 17 6 1.8149 -8.7743 1.3098 18 7 3.1465 -8.2339 0.9803 19 6 3.6229 -7.9758 -0.2773 20 1 4.6187 -7.5779 -0.4063 21 6 2.8262 -8.2253 -1.3862 22 7 1.6129 -8.7106 -1.2290 23 14 3.4759 -7.8724 -3.1017 24 1 4.8569 -7.3349 -3.0070 25 1 3.4860 -9.1276 -3.8951 26 1 2.6009 -6.8736 -3.7666 27 6 3.8692 -8.0218 2.2364 28 1 4.4147 -8.9340 2.4783 29 6 4.8660 -6.8859 2.1651 30 7 2.1483 -1.1513 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3634 -0.8898 -0.5141 34 1 3.9907 2.1374 0.0009 35 1 5.2608 -0.0003 0.0110 36 1 5.2683 -2.3378 0.0911 37 1 3.9902 -3.0394 -0.9302 38 1 2.6431 -3.5304 1.0929 39 1 3.9211 -2.8288 2.1141 40 1 2.7163 -4.3568 3.0244 41 1 3.6778 -5.3284 4.1693 42 1 1.4117 -6.2755 3.9475 43 1 1.6162 -6.3889 2.1853 44 1 1.9871 -9.8496 3.2030 45 1 0.7287 -8.5720 3.1961 46 1 1.7017 -9.7697 0.8803 47 1 1.0379 -8.1138 0.9251 48 1 1.0562 -8.8854 -2.0039 49 1 5.5199 -6.9267 3.0363 50 1 5.4657 -6.9909 1.2609 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042163080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:24 Heat of formation + Delta-G solvation = 15.514666 kcal Electronic energy + Delta-G solvation = -31312.083458 eV Core-core repulsion = 27338.939585 eV Total energy + Delta-G solvation = -3973.143873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.10638 -41.34017 -39.65025 -36.52957 -36.12486 -34.64465 -34.37182 -33.05482 -32.45055 -30.69807 -30.04841 -29.44232 -27.16149 -26.48085 -25.13208 -24.01656 -23.84729 -22.76454 -21.74111 -20.90033 -19.61006 -18.59290 -18.45644 -18.24503 -17.01487 -16.95480 -16.65477 -16.59914 -16.14263 -16.07709 -16.00665 -15.61903 -15.14456 -15.02225 -14.43811 -14.33451 -14.14327 -14.02734 -13.79106 -13.57882 -13.50281 -13.29804 -13.16183 -13.15454 -12.96611 -12.91469 -12.65864 -12.52565 -12.31635 -12.29167 -12.03572 -11.80981 -11.65899 -11.56333 -11.38186 -11.25914 -11.11880 -10.67826 -10.65512 -10.34247 -10.21589 -9.44743 -8.79683 -7.84085 -5.13525 -0.09839 0.08540 1.33661 1.36091 1.47102 1.75555 2.20107 2.46977 2.72294 2.92091 3.13865 3.35005 3.41929 3.56391 3.73743 3.88511 3.94311 4.01293 4.04223 4.11503 4.15626 4.22821 4.32999 4.43844 4.48241 4.51702 4.58538 4.59236 4.62681 4.69723 4.69958 4.75477 4.82344 4.90271 4.92263 4.95687 5.02910 5.06298 5.07130 5.16070 5.18090 5.34032 5.48958 5.54648 5.67041 5.72770 5.75039 5.82888 6.06400 6.23725 6.61565 7.12481 7.15557 7.34497 7.84051 8.47045 9.26915 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010466 B = 0.003593 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.661084 B = 7791.952296 C = 8666.228095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.302 3.698 3 N -0.541 5.541 4 C 0.152 3.848 5 C -0.225 4.225 6 C 0.170 3.830 7 C -0.052 4.052 8 C -0.112 4.112 9 C 0.510 3.490 10 O -0.588 6.588 11 N -0.598 5.598 12 C 0.109 3.891 13 C -0.121 4.121 14 C -0.083 4.083 15 H 0.124 0.876 16 C -0.131 4.131 17 C 0.187 3.813 18 N -0.605 5.605 19 C -0.199 4.199 20 H 0.068 0.932 21 C -0.063 4.063 22 N -0.949 5.949 23 Si 0.951 3.049 24 H -0.280 1.280 25 H -0.289 1.289 26 H -0.298 1.298 27 C 0.141 3.859 28 H 0.025 0.975 29 C 0.117 3.883 30 N -0.544 5.544 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.207 0.793 35 H 0.177 0.823 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.031 0.969 44 H 0.067 0.933 45 H 0.081 0.919 46 H -0.004 1.004 47 H 0.006 0.994 48 H 0.241 0.759 49 H 0.093 0.907 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.991 17.972 14.234 23.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.036 3.964 3 N -0.257 5.257 4 C -0.014 4.014 5 C -0.246 4.246 6 C 0.025 3.975 7 C -0.090 4.090 8 C -0.152 4.152 9 C 0.299 3.701 10 O -0.469 6.469 11 N -0.329 5.329 12 C -0.012 4.012 13 C -0.159 4.159 14 C -0.102 4.102 15 H 0.142 0.858 16 C -0.169 4.169 17 C 0.062 3.938 18 N -0.330 5.330 19 C -0.329 4.329 20 H 0.086 0.914 21 C -0.256 4.256 22 N -0.600 5.600 23 Si 0.783 3.217 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.225 1.225 27 C 0.035 3.965 28 H 0.043 0.957 29 C -0.007 4.007 30 N -0.260 5.260 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.223 0.777 35 H 0.195 0.805 36 H 0.123 0.877 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.138 0.862 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.050 0.950 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.015 0.985 47 H 0.024 0.976 48 H 0.051 0.949 49 H 0.111 0.889 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.375 17.820 13.572 22.442 hybrid contribution 0.940 -0.576 -1.991 2.276 sum 2.315 17.243 11.581 20.900 Atomic orbital electron populations 1.20644 0.84317 1.04452 1.04836 1.23748 0.99346 0.83215 0.90131 1.68332 1.11406 1.30190 1.15738 1.23895 0.89133 1.00016 0.88343 1.23073 1.04431 0.93082 1.04060 1.21770 0.89560 0.96291 0.89894 1.20269 0.99970 0.90009 0.98761 1.21422 1.01101 0.91878 1.00781 1.21000 0.82299 0.86760 0.80003 1.90655 1.37666 1.80399 1.38139 1.47987 1.41367 1.15301 1.28268 1.21960 0.89238 0.99133 0.90915 1.21807 0.98183 0.94020 1.01858 1.22412 0.94556 0.94913 0.98367 0.85839 1.23034 0.99739 0.99258 0.94846 1.20943 0.86430 0.94916 0.91547 1.44476 1.13507 1.74377 1.00635 1.19132 0.97769 1.33056 0.82950 0.91421 1.25270 0.96934 1.03120 1.00252 1.70151 1.09298 1.52596 1.27990 0.85370 0.77399 0.76869 0.82109 1.20481 1.21553 1.22546 1.21013 0.93423 0.95036 0.87072 0.95738 1.21260 0.94720 0.82755 1.01938 1.68106 1.10565 1.31520 1.15780 0.88229 0.88559 0.90109 0.77662 0.80526 0.87695 0.91844 0.88981 0.86236 0.88736 0.87741 0.88137 0.95009 0.91457 0.90077 0.98525 0.97585 0.94928 0.88879 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 10.32 71.23 0.74 -0.81 16 2 C 0.30 7.36 7.64 138.74 1.06 8.42 16 3 N -0.54 -11.97 10.33 -187.84 -1.94 -13.91 16 4 C 0.15 2.52 11.31 84.71 0.96 3.48 16 5 C -0.23 -3.99 9.80 22.44 0.22 -3.77 16 6 C 0.17 4.20 6.20 42.56 0.26 4.47 16 7 C -0.05 -1.42 4.94 29.85 0.15 -1.27 16 8 C -0.11 -3.07 3.93 29.85 0.12 -2.95 16 9 C 0.51 18.47 7.72 87.66 0.68 19.15 16 10 O -0.59 -26.70 15.44 -3.04 -0.05 -26.74 16 11 N -0.60 -19.47 2.97 -823.03 -2.45 -21.92 16 12 C 0.11 2.50 6.35 86.20 0.55 3.05 16 13 C -0.12 -3.24 5.04 30.57 0.15 -3.09 16 14 C -0.08 -2.40 3.68 -9.38 -0.03 -2.43 16 15 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 16 C -0.13 -4.43 6.32 32.15 0.20 -4.23 16 17 C 0.19 9.20 4.61 86.71 0.40 9.60 16 18 N -0.60 -30.79 3.20 -674.08 -2.15 -32.94 16 19 C -0.20 -11.70 9.70 84.03 0.81 -10.89 16 20 H 0.07 4.13 6.51 -2.91 -0.02 4.11 16 21 C -0.06 -3.86 5.49 84.86 0.47 -3.39 16 22 N -0.95 -59.84 10.38 21.65 0.22 -59.61 16 23 Si 0.95 50.92 29.55 68.60 2.03 52.95 16 24 H -0.28 -14.89 7.11 99.48 0.71 -14.18 16 25 H -0.29 -15.06 7.11 99.48 0.71 -14.36 16 26 H -0.30 -16.02 7.11 99.48 0.71 -15.31 16 27 C 0.14 5.43 2.97 44.78 0.13 5.56 16 28 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 29 C 0.12 4.18 5.68 85.77 0.49 4.67 16 30 N -0.54 -15.13 9.94 -176.03 -1.75 -16.88 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.21 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.18 1.98 8.01 -2.91 -0.02 1.96 16 36 H 0.10 2.52 7.90 -2.39 -0.02 2.50 16 37 H 0.06 2.20 8.10 -2.38 -0.02 2.18 16 38 H 0.09 2.78 7.63 -2.38 -0.02 2.76 16 39 H 0.12 2.39 7.91 -2.39 -0.02 2.37 16 40 H 0.09 1.86 6.02 -2.39 -0.01 1.85 16 41 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.03 1.19 6.85 -2.39 -0.02 1.17 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.08 2.41 7.98 -2.39 -0.02 2.39 16 46 H 0.00 -0.20 7.57 -2.39 -0.02 -0.22 16 47 H 0.01 0.33 7.05 -2.39 -0.02 0.32 16 48 H 0.24 14.94 8.31 -92.71 -0.77 14.17 16 49 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 50 H 0.05 2.30 5.53 -2.39 -0.01 2.29 16 Total: -1.00 -83.93 391.54 2.20 -81.72 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.94 Total: 11.78 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: 7.35 Total: 25.55 kcal Atomic # 7 Polarization: -137.19 SS G_CDS: -8.07 Total: -145.26 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.05 Total: -26.74 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 2.03 Total: 52.95 kcal Total: -83.93 2.20 -81.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042163080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.239 kcal (2) G-P(sol) polarization free energy of solvation -83.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds