Wall clock time and date at job start Wed Apr 1 2020 03:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47107 * 2 1 4 4 C 1.50696 * 109.47496 * 120.00426 * 2 1 3 5 5 N 1.32161 * 120.53658 * 305.19012 * 4 2 1 6 6 C 1.31860 * 120.96667 * 180.33239 * 5 4 2 7 7 N 1.31881 * 122.09595 * 359.65842 * 6 5 4 8 8 C 1.32133 * 120.96375 * 0.02562 * 7 6 5 9 9 C 1.39932 * 120.53848 * 124.90200 * 4 2 1 10 10 C 1.47831 * 120.93746 * 359.97438 * 9 4 2 11 11 O 1.21548 * 120.00328 * 305.48721 * 10 9 4 12 12 N 1.34778 * 119.99528 * 125.49112 * 10 9 4 13 13 C 1.46596 * 119.75456 * 354.36038 * 12 10 9 14 14 C 1.53890 * 110.70346 * 227.72183 * 13 12 10 15 15 C 1.51977 * 107.29111 * 308.18384 * 14 13 12 16 16 H 1.09007 * 111.01204 * 303.49078 * 15 14 13 17 17 C 1.53693 * 115.61861 * 175.75522 * 15 14 13 18 18 C 1.55238 * 101.72263 * 206.05867 * 17 15 14 19 19 N 1.48154 * 107.06756 * 22.82489 * 18 17 15 20 20 C 1.36939 * 126.39681 * 184.86359 * 19 18 17 21 21 H 1.08005 * 119.99893 * 179.69306 * 20 19 18 22 22 C 1.38810 * 120.00055 * 359.68429 * 20 19 18 23 23 N 1.31616 * 119.99958 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99943 * 180.27817 * 22 20 19 25 25 H 1.48500 * 109.47037 * 179.73099 * 24 22 20 26 26 H 1.48502 * 109.46823 * 299.72190 * 24 22 20 27 27 H 1.48495 * 109.47019 * 59.72886 * 24 22 20 28 28 C 1.45509 * 107.20484 * 4.59874 * 19 18 17 29 29 H 1.09003 * 109.56916 * 86.89200 * 28 19 18 30 30 C 1.46264 * 120.14695 * 174.23076 * 12 10 9 31 31 H 1.09004 * 109.46640 * 299.99583 * 1 2 3 32 32 H 1.08994 * 109.47288 * 59.99412 * 1 2 3 33 33 H 1.08995 * 109.46805 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46640 * 240.00416 * 2 1 3 35 35 H 1.08998 * 109.46848 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.46837 * 300.00472 * 3 2 1 37 37 H 1.08994 * 109.46986 * 60.00521 * 3 2 1 38 38 H 1.07998 * 118.94947 * 179.67902 * 6 5 4 39 39 H 1.08001 * 120.53559 * 180.02562 * 8 7 6 40 40 H 1.08995 * 109.23427 * 107.40492 * 13 12 10 41 41 H 1.08994 * 109.19483 * 348.00991 * 13 12 10 42 42 H 1.09004 * 109.89336 * 188.74530 * 14 13 12 43 43 H 1.09001 * 109.89708 * 67.63312 * 14 13 12 44 44 H 1.09001 * 110.96116 * 324.41881 * 17 15 14 45 45 H 1.09011 * 110.95577 * 88.11197 * 17 15 14 46 46 H 1.08998 * 110.02917 * 263.40046 * 18 17 15 47 47 H 1.09005 * 109.78932 * 142.11467 * 18 17 15 48 48 H 0.97005 * 119.99759 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.72776 * 8.84479 * 30 12 10 50 50 H 1.08998 * 109.63022 * 247.77705 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 1.2303 5 7 1.6379 -0.3308 2.4332 6 6 2.0772 -0.9422 3.5157 7 7 2.9178 -1.9565 3.4553 8 6 3.3590 -2.4055 2.2935 9 6 2.9197 -1.7867 1.1175 10 6 3.3845 -2.2528 -0.2062 11 8 2.5765 -2.5539 -1.0628 12 7 4.7045 -2.3439 -0.4630 13 6 5.6732 -1.8635 0.5268 14 6 6.7387 -0.9763 -0.1408 15 6 7.3005 -1.7543 -1.3192 16 1 7.6972 -2.7175 -0.9982 17 6 8.3175 -0.9993 -2.1898 18 6 8.1560 -1.7164 -3.5572 19 7 6.8108 -2.3373 -3.5663 20 6 6.2955 -3.1453 -4.5445 21 1 5.2986 -3.5481 -4.4425 22 6 7.0544 -3.4466 -5.6670 23 7 8.2694 -2.9561 -5.7911 24 14 6.3485 -4.5426 -7.0050 25 1 7.3482 -4.7044 -8.0911 26 1 6.0197 -5.8730 -6.4328 27 1 5.1166 -3.9218 -7.5547 28 6 6.1419 -1.9332 -2.3389 29 1 5.6414 -0.9773 -2.4935 30 6 5.1693 -2.9226 -1.7234 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1301 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6768 1.9563 0.8900 38 1 1.7374 -0.6017 4.4827 39 1 4.0471 -3.2369 2.2520 40 1 6.1604 -2.7179 0.9965 41 1 5.1503 -1.2851 1.2884 42 1 7.5346 -0.7539 0.5700 43 1 6.2835 -0.0498 -0.4911 44 1 8.0581 0.0567 -2.2655 45 1 9.3294 -1.1234 -1.8038 46 1 8.9206 -2.4852 -3.6681 47 1 8.2354 -0.9904 -4.3663 48 1 8.7998 -3.1670 -6.5754 49 1 4.3221 -3.0789 -2.3911 50 1 5.6726 -3.8695 -1.5280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042360517.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:49 Heat of formation + Delta-G solvation = 40.507204 kcal Electronic energy + Delta-G solvation = -31642.512335 eV Core-core repulsion = 27670.452220 eV Total energy + Delta-G solvation = -3972.060115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.72307 -40.04994 -38.30920 -36.36673 -35.48970 -33.40309 -32.96655 -32.05894 -31.27935 -29.38348 -28.54382 -27.30189 -25.72456 -25.14423 -24.69356 -23.51344 -22.36855 -21.06472 -20.39207 -19.99014 -19.32416 -18.19487 -17.40132 -16.95154 -16.60692 -16.07033 -15.28143 -15.01652 -14.78250 -14.77376 -14.40789 -14.27464 -14.09104 -13.85612 -13.79007 -13.38966 -13.31070 -13.08490 -12.76053 -12.35160 -12.31970 -12.02530 -11.82936 -11.74285 -11.62392 -11.51356 -11.38909 -11.05698 -10.99351 -10.86240 -10.80070 -10.75202 -10.20498 -10.03319 -10.00956 -9.92032 -9.69234 -9.67815 -9.55380 -9.48800 -8.65742 -8.56522 -6.89137 -5.74395 -3.08480 0.31263 0.70988 2.49966 2.91910 3.41023 3.41296 3.45536 3.46697 3.67346 3.79561 4.00825 4.23801 4.48165 4.60053 4.75746 4.86357 4.88219 4.90293 4.95742 5.06848 5.16487 5.31663 5.37967 5.44787 5.52432 5.56302 5.61561 5.67733 5.70561 5.71808 5.81198 5.84129 5.93728 5.96857 6.00731 6.04615 6.07246 6.10314 6.16906 6.30235 6.40927 6.50179 6.57555 6.63437 6.68309 6.98947 7.35079 7.52049 7.57092 7.70857 7.78157 8.05646 8.20390 9.16239 9.79240 10.45445 11.37846 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.003254 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.896055 B = 8603.181315 C = 9306.063701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 C -0.139 4.139 4 C 0.232 3.768 5 N -0.514 5.514 6 C 0.306 3.694 7 N -0.524 5.524 8 C 0.182 3.818 9 C -0.226 4.226 10 C 0.565 3.435 11 O -0.522 6.522 12 N -0.592 5.592 13 C 0.105 3.895 14 C -0.118 4.118 15 C -0.114 4.114 16 H 0.078 0.922 17 C -0.137 4.137 18 C 0.178 3.822 19 N -0.591 5.591 20 C -0.231 4.231 21 H 0.079 0.921 22 C -0.005 4.005 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.290 1.290 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.158 3.842 29 H 0.025 0.975 30 C 0.113 3.887 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.200 0.800 39 H 0.173 0.827 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.038 0.962 48 H 0.253 0.747 49 H 0.094 0.906 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 6.614 18.619 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.081 4.081 3 C -0.197 4.197 4 C 0.085 3.915 5 N -0.227 5.227 6 C 0.019 3.981 7 N -0.237 5.237 8 C 0.015 3.985 9 C -0.234 4.234 10 C 0.351 3.649 11 O -0.399 6.399 12 N -0.325 5.325 13 C -0.018 4.018 14 C -0.156 4.156 15 C -0.134 4.134 16 H 0.096 0.904 17 C -0.175 4.175 18 C 0.054 3.946 19 N -0.316 5.316 20 C -0.359 4.359 21 H 0.097 0.903 22 C -0.201 4.201 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.211 1.211 27 H -0.211 1.211 28 C 0.049 3.951 29 H 0.043 0.957 30 C -0.010 4.010 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.216 0.784 39 H 0.190 0.810 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.112 0.888 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.479 6.664 18.804 21.677 hybrid contribution 0.131 -0.965 -1.366 1.678 sum -8.348 5.700 17.438 20.156 Atomic orbital electron populations 1.21701 0.92681 1.02270 1.02535 1.20449 0.97688 0.96593 0.93396 1.21781 1.00989 0.94092 1.02834 1.21822 0.86993 0.88783 0.93921 1.68275 1.25318 1.30599 0.98529 1.25168 0.88277 0.86995 0.97624 1.68457 1.12995 1.13954 1.28328 1.23458 0.92987 0.95837 0.86170 1.21683 1.03541 1.01616 0.96569 1.17848 0.82683 0.78268 0.86117 1.90814 1.53361 1.49281 1.46397 1.47835 1.04722 1.60242 1.19672 1.21833 0.91041 0.98360 0.90556 1.21776 0.97292 0.98435 0.98137 1.22289 0.97591 0.99194 0.94311 0.90398 1.22710 0.97657 0.98797 0.98383 1.21535 0.87113 0.95285 0.90707 1.44155 1.13147 1.57109 1.17214 1.18990 0.98575 1.21551 0.96740 0.90306 1.24777 0.96392 1.00556 0.98375 1.69930 1.09477 1.48053 1.29381 0.86228 0.77868 0.80404 0.81471 1.21615 1.21090 1.21071 1.20969 0.91802 0.95074 0.87283 0.95737 1.21568 0.99616 0.96568 0.83205 0.91652 0.91673 0.92626 0.87684 0.92766 0.91382 0.91681 0.78364 0.80997 0.91179 0.91018 0.90681 0.91396 0.92534 0.92199 0.92621 0.94366 0.93675 0.88768 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.06 37.16 0.34 -1.08 16 2 C -0.06 -0.74 3.00 -91.77 -0.28 -1.01 16 3 C -0.14 -1.42 9.15 37.16 0.34 -1.08 16 4 C 0.23 2.81 5.52 -81.82 -0.45 2.36 16 5 N -0.51 -5.64 9.99 -10.48 -0.10 -5.75 16 6 C 0.31 2.88 12.27 -92.02 -1.13 1.75 16 7 N -0.52 -5.42 10.42 -14.24 -0.15 -5.57 16 8 C 0.18 1.92 9.19 -16.78 -0.15 1.77 16 9 C -0.23 -2.82 4.50 -104.69 -0.47 -3.29 16 10 C 0.57 8.49 6.38 -12.34 -0.08 8.41 16 11 O -0.52 -9.62 14.83 5.32 0.08 -9.55 16 12 N -0.59 -8.54 2.98 -175.11 -0.52 -9.06 16 13 C 0.11 1.18 5.39 -3.53 -0.02 1.17 16 14 C -0.12 -1.44 5.76 -26.79 -0.15 -1.59 16 15 C -0.11 -1.83 2.57 -89.52 -0.23 -2.06 16 16 H 0.08 1.28 8.12 -51.93 -0.42 0.86 16 17 C -0.14 -2.39 6.57 -25.19 -0.17 -2.56 16 18 C 0.18 4.14 5.44 -1.95 -0.01 4.13 16 19 N -0.59 -14.46 3.35 -162.94 -0.55 -15.00 16 20 C -0.23 -6.24 9.88 -15.06 -0.15 -6.39 16 21 H 0.08 2.08 7.43 -52.48 -0.39 1.69 16 22 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 23 N -0.92 -26.53 10.44 55.49 0.58 -25.95 16 24 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.16 3.10 2.81 -67.82 -0.19 2.91 16 29 H 0.03 0.53 7.94 -51.93 -0.41 0.12 16 30 C 0.11 2.02 5.60 -4.79 -0.03 1.99 16 31 H 0.06 0.65 7.98 -51.93 -0.41 0.23 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 1.50 5.55 -51.93 -0.29 1.21 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.17 1.47 7.81 -52.49 -0.41 1.06 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.72 5.53 -51.93 -0.29 0.43 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.87 7.99 -51.93 -0.41 0.45 16 44 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 45 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 46 H 0.06 1.43 7.22 -51.93 -0.38 1.06 16 47 H 0.04 0.99 7.76 -51.93 -0.40 0.59 16 48 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.09 1.91 6.71 -51.93 -0.35 1.56 16 50 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -31.42 389.30 -10.69 -42.11 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.95 Total: 0.73 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -2.92 Total: 5.20 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: -0.74 Total: -61.34 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.42 -10.69 -42.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042360517.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.617 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds