Wall clock time and date at job start Wed Apr 1 2020 03:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47107 * 2 1 4 4 C 1.50696 * 109.47496 * 120.00426 * 2 1 3 5 5 N 1.32161 * 120.53658 * 305.19012 * 4 2 1 6 6 C 1.31860 * 120.96667 * 180.33239 * 5 4 2 7 7 N 1.31881 * 122.09595 * 359.65842 * 6 5 4 8 8 C 1.32133 * 120.96375 * 0.02562 * 7 6 5 9 9 C 1.39932 * 120.53848 * 124.90200 * 4 2 1 10 10 C 1.47831 * 120.93746 * 359.97438 * 9 4 2 11 11 O 1.21548 * 120.00328 * 305.48721 * 10 9 4 12 12 N 1.34778 * 119.99528 * 125.49112 * 10 9 4 13 13 C 1.46596 * 119.75456 * 354.36038 * 12 10 9 14 14 C 1.53890 * 110.70346 * 227.72183 * 13 12 10 15 15 C 1.51977 * 107.29111 * 308.18384 * 14 13 12 16 16 H 1.09007 * 111.01204 * 303.49078 * 15 14 13 17 17 C 1.53693 * 115.61861 * 175.75522 * 15 14 13 18 18 C 1.55238 * 101.72263 * 206.05867 * 17 15 14 19 19 N 1.48154 * 107.06756 * 22.82489 * 18 17 15 20 20 C 1.36939 * 126.39681 * 184.86359 * 19 18 17 21 21 H 1.08005 * 119.99893 * 179.69306 * 20 19 18 22 22 C 1.38810 * 120.00055 * 359.68429 * 20 19 18 23 23 N 1.31616 * 119.99958 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99943 * 180.27817 * 22 20 19 25 25 H 1.48500 * 109.47037 * 179.73099 * 24 22 20 26 26 H 1.48502 * 109.46823 * 299.72190 * 24 22 20 27 27 H 1.48495 * 109.47019 * 59.72886 * 24 22 20 28 28 C 1.45509 * 107.20484 * 4.59874 * 19 18 17 29 29 H 1.09003 * 109.56916 * 86.89200 * 28 19 18 30 30 C 1.46264 * 120.14695 * 174.23076 * 12 10 9 31 31 H 1.09004 * 109.46640 * 299.99583 * 1 2 3 32 32 H 1.08994 * 109.47288 * 59.99412 * 1 2 3 33 33 H 1.08995 * 109.46805 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46640 * 240.00416 * 2 1 3 35 35 H 1.08998 * 109.46848 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.46837 * 300.00472 * 3 2 1 37 37 H 1.08994 * 109.46986 * 60.00521 * 3 2 1 38 38 H 1.07998 * 118.94947 * 179.67902 * 6 5 4 39 39 H 1.08001 * 120.53559 * 180.02562 * 8 7 6 40 40 H 1.08995 * 109.23427 * 107.40492 * 13 12 10 41 41 H 1.08994 * 109.19483 * 348.00991 * 13 12 10 42 42 H 1.09004 * 109.89336 * 188.74530 * 14 13 12 43 43 H 1.09001 * 109.89708 * 67.63312 * 14 13 12 44 44 H 1.09001 * 110.96116 * 324.41881 * 17 15 14 45 45 H 1.09011 * 110.95577 * 88.11197 * 17 15 14 46 46 H 1.08998 * 110.02917 * 263.40046 * 18 17 15 47 47 H 1.09005 * 109.78932 * 142.11467 * 18 17 15 48 48 H 0.97005 * 119.99759 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.72776 * 8.84479 * 30 12 10 50 50 H 1.08998 * 109.63022 * 247.77705 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 1.2303 5 7 1.6379 -0.3308 2.4332 6 6 2.0772 -0.9422 3.5157 7 7 2.9178 -1.9565 3.4553 8 6 3.3590 -2.4055 2.2935 9 6 2.9197 -1.7867 1.1175 10 6 3.3845 -2.2528 -0.2062 11 8 2.5765 -2.5539 -1.0628 12 7 4.7045 -2.3439 -0.4630 13 6 5.6732 -1.8635 0.5268 14 6 6.7387 -0.9763 -0.1408 15 6 7.3005 -1.7543 -1.3192 16 1 7.6972 -2.7175 -0.9982 17 6 8.3175 -0.9993 -2.1898 18 6 8.1560 -1.7164 -3.5572 19 7 6.8108 -2.3373 -3.5663 20 6 6.2955 -3.1453 -4.5445 21 1 5.2986 -3.5481 -4.4425 22 6 7.0544 -3.4466 -5.6670 23 7 8.2694 -2.9561 -5.7911 24 14 6.3485 -4.5426 -7.0050 25 1 7.3482 -4.7044 -8.0911 26 1 6.0197 -5.8730 -6.4328 27 1 5.1166 -3.9218 -7.5547 28 6 6.1419 -1.9332 -2.3389 29 1 5.6414 -0.9773 -2.4935 30 6 5.1693 -2.9226 -1.7234 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1301 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6768 1.9563 0.8900 38 1 1.7374 -0.6017 4.4827 39 1 4.0471 -3.2369 2.2520 40 1 6.1604 -2.7179 0.9965 41 1 5.1503 -1.2851 1.2884 42 1 7.5346 -0.7539 0.5700 43 1 6.2835 -0.0498 -0.4911 44 1 8.0581 0.0567 -2.2655 45 1 9.3294 -1.1234 -1.8038 46 1 8.9206 -2.4852 -3.6681 47 1 8.2354 -0.9904 -4.3663 48 1 8.7998 -3.1670 -6.5754 49 1 4.3221 -3.0789 -2.3911 50 1 5.6726 -3.8695 -1.5280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042360517.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:48 Heat of formation + Delta-G solvation = 22.243894 kcal Electronic energy + Delta-G solvation = -31643.304292 eV Core-core repulsion = 27670.452220 eV Total energy + Delta-G solvation = -3972.852072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.63920 -41.25390 -39.68575 -37.34525 -36.80874 -34.75251 -34.20575 -33.07867 -32.80186 -30.81242 -30.15926 -28.13387 -26.77832 -26.49976 -26.00189 -24.79799 -23.64216 -21.93985 -21.81011 -21.60039 -20.58219 -19.10524 -18.71058 -18.27623 -17.74083 -17.29182 -16.87986 -16.23701 -16.05618 -15.84261 -15.71959 -15.54020 -15.26901 -15.09484 -14.86284 -14.60822 -14.43736 -14.14589 -13.99708 -13.85168 -13.60622 -13.16409 -13.13128 -13.09906 -12.80379 -12.74563 -12.57328 -12.57112 -12.35903 -12.16986 -12.04361 -11.97831 -11.75357 -11.65173 -11.53860 -11.38427 -11.07378 -11.03189 -10.72613 -10.60659 -10.36946 -9.79727 -8.91448 -7.86668 -5.21492 -0.53299 -0.12664 1.36860 1.43997 1.46331 1.52449 1.76931 2.48786 2.58909 2.85390 3.05785 3.17968 3.25034 3.31869 3.47740 3.72948 3.74101 3.90989 3.94012 4.00361 4.08640 4.12504 4.23520 4.25063 4.30247 4.40919 4.47808 4.57775 4.59115 4.67772 4.72858 4.80085 4.84159 4.84652 4.86828 4.88600 5.03046 5.07301 5.13257 5.15864 5.21249 5.23350 5.32694 5.34201 5.47758 5.57421 5.66047 5.75493 5.78038 6.18503 6.21082 6.89329 6.91572 7.07732 7.76222 8.42960 9.24109 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.003254 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.896055 B = 8603.181315 C = 9306.063701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.132 4.132 4 C 0.227 3.773 5 N -0.520 5.520 6 C 0.313 3.687 7 N -0.527 5.527 8 C 0.194 3.806 9 C -0.243 4.243 10 C 0.568 3.432 11 O -0.567 6.567 12 N -0.589 5.589 13 C 0.102 3.898 14 C -0.109 4.109 15 C -0.096 4.096 16 H 0.081 0.919 17 C -0.122 4.122 18 C 0.181 3.819 19 N -0.612 5.612 20 C -0.238 4.238 21 H 0.076 0.924 22 C -0.060 4.060 23 N -0.948 5.948 24 Si 0.970 3.030 25 H -0.292 1.292 26 H -0.276 1.276 27 H -0.283 1.283 28 C 0.149 3.851 29 H 0.008 0.992 30 C 0.127 3.873 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.237 0.763 39 H 0.194 0.806 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.024 0.976 47 H -0.002 1.002 48 H 0.247 0.753 49 H 0.060 0.940 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.028 7.246 22.411 24.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.085 4.085 3 C -0.190 4.190 4 C 0.080 3.920 5 N -0.234 5.234 6 C 0.027 3.973 7 N -0.240 5.240 8 C 0.027 3.973 9 C -0.251 4.251 10 C 0.355 3.645 11 O -0.446 6.446 12 N -0.321 5.321 13 C -0.019 4.019 14 C -0.147 4.147 15 C -0.116 4.116 16 H 0.099 0.901 17 C -0.160 4.160 18 C 0.057 3.943 19 N -0.337 5.337 20 C -0.367 4.367 21 H 0.094 0.906 22 C -0.253 4.253 23 N -0.597 5.597 24 Si 0.798 3.202 25 H -0.218 1.218 26 H -0.202 1.202 27 H -0.209 1.209 28 C 0.041 3.959 29 H 0.025 0.975 30 C 0.004 3.996 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.253 0.747 39 H 0.211 0.789 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.105 0.895 46 H 0.042 0.958 47 H 0.017 0.983 48 H 0.056 0.944 49 H 0.079 0.921 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.694 7.318 22.659 25.348 hybrid contribution 0.127 -1.118 -2.503 2.744 sum -8.567 6.199 20.156 22.761 Atomic orbital electron populations 1.21661 0.91873 1.01611 1.03468 1.20409 0.98393 0.97255 0.92454 1.21734 1.00566 0.93077 1.03628 1.21841 0.86848 0.88803 0.94467 1.68352 1.25614 1.31062 0.98322 1.25972 0.86898 0.85926 0.98485 1.68595 1.13397 1.14292 1.27759 1.23769 0.92519 0.95603 0.85394 1.21431 1.05176 1.02902 0.95541 1.18233 0.82286 0.77251 0.86731 1.90790 1.54536 1.51157 1.48161 1.47827 1.05409 1.59930 1.18902 1.22123 0.90361 0.99572 0.89890 1.21770 0.98362 0.97555 0.97044 1.22208 0.95027 0.99884 0.94472 0.90093 1.22578 0.99770 0.98773 0.94864 1.21343 0.85960 0.93778 0.93241 1.44412 1.14032 1.56696 1.18585 1.19274 0.98528 1.21271 0.97602 0.90602 1.25528 0.96928 1.02360 1.00505 1.70136 1.10499 1.49431 1.29597 0.85285 0.76994 0.79022 0.78873 1.21760 1.20212 1.20892 1.21099 0.93615 0.94334 0.86840 0.97507 1.21122 0.97760 0.96338 0.84415 0.90593 0.90812 0.94037 0.90751 0.93310 0.90781 0.90643 0.74693 0.78901 0.88416 0.88945 0.86787 0.91911 0.91367 0.89502 0.95813 0.98334 0.94365 0.92149 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.06 71.98 0.65 -2.01 16 2 C -0.07 -1.55 3.00 -11.54 -0.03 -1.58 16 3 C -0.13 -2.56 9.15 71.98 0.66 -1.90 16 4 C 0.23 5.19 5.52 42.92 0.24 5.42 16 5 N -0.52 -10.02 9.99 -187.06 -1.87 -11.89 16 6 C 0.31 4.71 12.27 180.84 2.22 6.93 16 7 N -0.53 -8.92 10.42 -198.97 -2.07 -10.99 16 8 C 0.19 3.48 9.19 85.07 0.78 4.27 16 9 C -0.24 -5.65 4.50 -19.91 -0.09 -5.74 16 10 C 0.57 16.98 6.38 86.78 0.55 17.54 16 11 O -0.57 -21.88 14.83 -3.87 -0.06 -21.94 16 12 N -0.59 -16.46 2.98 -826.21 -2.46 -18.92 16 13 C 0.10 1.94 5.39 86.66 0.47 2.40 16 14 C -0.11 -2.25 5.76 30.56 0.18 -2.07 16 15 C -0.10 -2.90 2.57 -10.08 -0.03 -2.93 16 16 H 0.08 2.44 8.12 -2.38 -0.02 2.42 16 17 C -0.12 -4.09 6.57 31.60 0.21 -3.89 16 18 C 0.18 8.76 5.44 86.83 0.47 9.23 16 19 N -0.61 -31.12 3.35 -669.42 -2.24 -33.36 16 20 C -0.24 -13.43 9.88 84.03 0.83 -12.60 16 21 H 0.08 4.21 7.43 -2.91 -0.02 4.19 16 22 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 23 N -0.95 -57.02 10.44 21.65 0.23 -56.79 16 24 Si 0.97 46.67 29.55 68.60 2.03 48.69 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 27 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 28 C 0.15 5.95 2.81 45.59 0.13 6.07 16 29 H 0.01 0.32 7.94 -2.39 -0.02 0.30 16 30 C 0.13 4.65 5.60 86.02 0.48 5.13 16 31 H 0.08 1.39 7.98 -2.39 -0.02 1.37 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 2.23 5.55 -2.39 -0.01 2.21 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.24 1.58 8.06 -2.91 -0.02 1.55 16 39 H 0.19 2.54 7.81 -2.91 -0.02 2.52 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 1.46 5.53 -2.39 -0.01 1.45 16 42 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.41 7.99 -2.39 -0.02 1.39 16 44 H 0.07 2.15 8.13 -2.39 -0.02 2.13 16 45 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 46 H 0.02 1.28 7.22 -2.39 -0.02 1.26 16 47 H 0.00 -0.09 7.76 -2.38 -0.02 -0.11 16 48 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 49 H 0.06 2.60 6.71 -2.39 -0.02 2.58 16 50 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -73.71 389.30 2.66 -71.05 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.93 Total: 12.83 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 8.18 Total: 21.31 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -8.42 Total: -131.95 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.06 Total: -21.94 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -73.71 2.66 -71.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042360517.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.294 kcal (2) G-P(sol) polarization free energy of solvation -73.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds