Wall clock time and date at job start Wed Apr 1 2020 03:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31913 * 119.03898 * 2 1 4 4 C 1.32178 * 121.03151 * 179.97438 * 3 2 1 5 5 C 1.38799 * 119.14741 * 0.02562 * 4 3 2 6 6 C 1.39498 * 118.26387 * 359.97438 * 5 4 3 7 7 C 1.48446 * 120.54710 * 180.02562 * 6 5 4 8 8 O 1.21483 * 120.00621 * 11.13650 * 7 6 5 9 9 N 1.34784 * 120.00112 * 191.13366 * 7 6 5 10 10 C 1.47570 * 118.62960 * 5.67204 * 9 7 6 11 11 C 1.54323 * 111.96099 * 137.72348 * 10 9 7 12 12 C 1.50864 * 110.32156 * 319.66405 * 11 10 9 13 13 C 1.52615 * 109.37259 * 91.75849 * 12 11 10 14 14 C 1.47083 * 114.26668 * 275.25833 * 13 12 11 15 15 C 1.54262 * 112.34426 * 301.70841 * 14 13 12 16 16 C 1.54396 * 104.94815 * 237.63929 * 15 14 13 17 17 N 1.48148 * 104.61795 * 23.87111 * 16 15 14 18 18 C 1.36932 * 127.83243 * 140.41198 * 17 16 15 19 19 H 1.07999 * 120.00569 * 346.28505 * 18 17 16 20 20 C 1.38820 * 119.99931 * 166.28843 * 18 17 16 21 21 N 1.31619 * 119.99818 * 351.37636 * 20 18 17 22 22 Si 1.86797 * 119.99930 * 171.37346 * 20 18 17 23 23 H 1.48494 * 109.47201 * 94.77910 * 22 20 18 24 24 H 1.48501 * 109.46990 * 214.78074 * 22 20 18 25 25 H 1.48501 * 109.47503 * 334.77655 * 22 20 18 26 26 C 1.48154 * 104.32866 * 320.43219 * 17 16 15 27 27 C 1.44588 * 118.63900 * 185.93651 * 9 7 6 28 28 N 1.31550 * 119.04526 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46670 * 89.99401 * 1 2 3 30 30 H 1.08995 * 109.46831 * 209.99698 * 1 2 3 31 31 H 1.08997 * 109.47049 * 329.99619 * 1 2 3 32 32 H 1.08006 * 120.42334 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.86849 * 179.97438 * 5 4 3 34 34 H 1.08996 * 108.93833 * 258.54285 * 10 9 7 35 35 H 1.08998 * 108.93876 * 17.14938 * 10 9 7 36 36 H 1.09002 * 109.35540 * 199.35398 * 11 10 9 37 37 H 1.09007 * 109.20496 * 79.87788 * 11 10 9 38 38 H 1.08998 * 109.48753 * 331.79146 * 12 11 10 39 39 H 1.08993 * 109.49276 * 211.72957 * 12 11 10 40 40 H 1.09008 * 108.52584 * 154.02057 * 13 12 11 41 41 H 1.08998 * 108.52791 * 36.50261 * 13 12 11 42 42 H 1.08995 * 110.34622 * 356.50935 * 15 14 13 43 43 H 1.09003 * 110.33918 * 118.77482 * 15 14 13 44 44 H 1.09003 * 110.40397 * 142.65731 * 16 15 14 45 45 H 1.08998 * 110.40431 * 265.08658 * 16 15 14 46 46 H 0.97001 * 119.99952 * 180.02562 * 21 20 18 47 47 H 1.08995 * 110.40853 * 280.76183 * 26 17 16 48 48 H 1.09002 * 110.40523 * 158.33159 * 26 17 16 49 49 H 1.09001 * 109.46465 * 30.59060 * 27 9 7 50 50 H 1.09002 * 109.46547 * 150.56675 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4683 1.1993 0.0005 5 6 4.1861 0.0113 0.0005 6 6 3.4761 -1.1895 0.0005 7 6 4.1925 -2.4896 0.0011 8 8 5.3897 -2.5235 0.2047 9 7 3.5148 -3.6327 -0.2243 10 6 2.0884 -3.5480 -0.5932 11 6 1.7257 -4.5318 -1.7255 12 6 2.8232 -4.5675 -2.7600 13 6 3.8127 -5.6756 -2.4103 14 6 4.8502 -5.2775 -1.4468 15 6 5.6849 -4.0798 -1.9452 16 6 7.1438 -4.5851 -1.9490 17 7 7.0291 -6.0580 -2.0593 18 6 7.8103 -6.9086 -2.7949 19 1 8.4732 -6.5150 -3.5513 20 6 7.7503 -8.2769 -2.5686 21 7 7.0757 -8.7447 -1.5398 22 14 8.6268 -9.4540 -3.7242 23 1 9.9695 -9.7761 -3.1778 24 1 7.8330 -10.7022 -3.8548 25 1 8.7746 -8.8195 -5.0587 26 6 5.8770 -6.4018 -1.1935 27 6 4.2139 -4.8910 -0.0890 28 7 2.1457 -1.1501 0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 3.9825 2.1491 0.0001 33 1 5.2661 0.0164 0.0005 34 1 1.4822 -3.7734 0.2842 35 1 1.8678 -2.5326 -0.9222 36 1 0.7956 -4.2136 -2.1964 37 1 1.5928 -5.5288 -1.3053 38 1 3.3412 -3.6086 -2.7739 39 1 2.3914 -4.7622 -3.7417 40 1 4.3004 -6.0065 -3.3274 41 1 3.2581 -6.5166 -1.9943 42 1 5.3790 -3.7976 -2.9525 43 1 5.5784 -3.2346 -1.2651 44 1 7.6838 -4.1807 -2.8052 45 1 7.6433 -4.3113 -1.0196 46 1 7.0341 -9.7008 -1.3814 47 1 6.1785 -6.4125 -0.1462 48 1 5.4612 -7.3678 -1.4801 49 1 4.9960 -4.7929 0.6639 50 1 3.5110 -5.6661 0.2165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045985428.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:30 Heat of formation + Delta-G solvation = 83.636663 kcal Electronic energy + Delta-G solvation = -32127.062948 eV Core-core repulsion = 28156.873067 eV Total energy + Delta-G solvation = -3970.189882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.78956 -40.46118 -38.04231 -36.28216 -34.40147 -33.56953 -33.34730 -32.61627 -30.84654 -28.85344 -28.02784 -27.52119 -26.52024 -25.01630 -24.46483 -23.36308 -22.87868 -21.05580 -20.25352 -19.75322 -18.31457 -17.89379 -17.29353 -16.82607 -16.31582 -16.00037 -15.69539 -15.43480 -15.10730 -14.72055 -14.41998 -14.13339 -13.90123 -13.80971 -13.57693 -13.23219 -12.96850 -12.79821 -12.70746 -12.70217 -12.46350 -12.05795 -11.79859 -11.36388 -11.31842 -11.12254 -10.98499 -10.88579 -10.75389 -10.70131 -10.54765 -10.25247 -10.12326 -9.93106 -9.89466 -9.70345 -9.65970 -9.47767 -9.37433 -9.12565 -8.58154 -8.20276 -6.70745 -5.67600 -2.99500 0.23360 0.55300 2.59383 2.86892 3.41446 3.43079 3.48566 3.50561 3.53343 3.68291 4.14767 4.51102 4.56222 4.66722 4.86238 5.01020 5.07499 5.12854 5.17367 5.26776 5.33097 5.37067 5.45836 5.52449 5.54090 5.64538 5.74652 5.81428 5.86472 5.96799 6.00270 6.09522 6.13586 6.22535 6.26836 6.32703 6.39985 6.46350 6.52665 6.66955 6.81010 6.86065 6.90979 7.03793 7.06397 7.27918 7.35826 7.51045 7.61914 7.67985 7.83632 8.08732 8.35364 9.23989 9.87116 10.67149 11.45945 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022277 B = 0.003049 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.597219 B = 9180.158161 C = 9847.281253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.307 3.693 3 N -0.509 5.509 4 C 0.154 3.846 5 C -0.178 4.178 6 C 0.142 3.858 7 C 0.551 3.449 8 O -0.502 6.502 9 N -0.568 5.568 10 C 0.088 3.912 11 C -0.133 4.133 12 C -0.115 4.115 13 C -0.093 4.093 14 C -0.088 4.088 15 C -0.159 4.159 16 C 0.131 3.869 17 N -0.597 5.597 18 C -0.216 4.216 19 H 0.074 0.926 20 C -0.011 4.011 21 N -0.918 5.918 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.171 3.829 27 C 0.122 3.878 28 N -0.485 5.485 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.177 0.823 33 H 0.162 0.838 34 H 0.063 0.937 35 H 0.126 0.874 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.041 0.959 43 H 0.102 0.898 44 H 0.036 0.964 45 H 0.021 0.979 46 H 0.251 0.749 47 H 0.018 0.982 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.211 18.171 3.591 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 N -0.224 5.224 4 C -0.013 4.013 5 C -0.200 4.200 6 C -0.005 4.005 7 C 0.337 3.663 8 O -0.379 6.379 9 N -0.297 5.297 10 C -0.034 4.034 11 C -0.171 4.171 12 C -0.152 4.152 13 C -0.130 4.130 14 C -0.091 4.091 15 C -0.197 4.197 16 C 0.005 3.995 17 N -0.321 5.321 18 C -0.345 4.345 19 H 0.091 0.909 20 C -0.207 4.207 21 N -0.566 5.566 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.044 3.956 27 C 0.000 4.000 28 N -0.204 5.204 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.194 0.806 33 H 0.180 0.820 34 H 0.081 0.919 35 H 0.143 0.857 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.120 0.880 44 H 0.054 0.946 45 H 0.039 0.961 46 H 0.062 0.938 47 H 0.036 0.964 48 H 0.107 0.893 49 H 0.102 0.898 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.496 17.804 3.662 24.546 hybrid contribution 1.450 -0.807 -0.627 1.774 sum -15.046 16.997 3.036 22.902 Atomic orbital electron populations 1.20610 0.85247 1.04463 1.04139 1.23460 0.98470 0.83367 0.90644 1.68206 1.10472 1.30439 1.13288 1.23366 0.89386 0.98701 0.89854 1.22994 1.04087 0.92888 1.00065 1.21802 0.89777 0.95150 0.93814 1.17821 0.86268 0.82988 0.79227 1.90706 1.13173 1.85704 1.48303 1.47687 1.11556 1.05781 1.64699 1.23038 0.79395 1.03350 0.97584 1.21891 0.98732 0.99994 0.96465 1.21077 0.96323 1.00205 0.97612 1.20290 0.95883 0.96860 1.00007 1.21244 0.95849 0.98842 0.93166 1.23516 0.96557 0.99080 1.00511 1.21607 0.94277 0.86192 0.97461 1.44959 1.32907 1.00688 1.53512 1.19022 1.17197 0.87212 1.11047 0.90857 1.24819 1.00920 0.97012 0.97919 1.69883 1.46111 1.12214 1.28383 0.86149 0.78898 0.80747 0.80280 1.21708 1.21716 1.20716 1.21581 0.85595 0.95441 0.92957 1.21942 0.96116 0.83077 0.98908 1.68579 1.08690 1.29218 1.13878 0.89388 0.89336 0.89449 0.80612 0.82028 0.91909 0.85743 0.91276 0.91706 0.92122 0.92568 0.91833 0.92784 0.94023 0.88040 0.94580 0.96101 0.93848 0.96368 0.89261 0.89782 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 10.31 36.01 0.37 -0.14 16 2 C 0.31 2.90 7.64 -157.30 -1.20 1.70 16 3 N -0.51 -4.89 10.32 -10.73 -0.11 -5.00 16 4 C 0.15 1.28 11.31 -17.19 -0.19 1.08 16 5 C -0.18 -1.79 9.72 -38.90 -0.38 -2.17 16 6 C 0.14 1.73 6.51 -82.64 -0.54 1.19 16 7 C 0.55 8.19 6.38 -12.05 -0.08 8.11 16 8 O -0.50 -8.86 13.28 5.38 0.07 -8.79 16 9 N -0.57 -8.07 2.03 -173.22 -0.35 -8.42 16 10 C 0.09 1.01 5.30 -2.76 -0.01 0.99 16 11 C -0.13 -1.49 5.71 -27.11 -0.15 -1.65 16 12 C -0.11 -1.59 5.35 -28.00 -0.15 -1.74 16 13 C -0.09 -1.62 3.85 -29.77 -0.11 -1.73 16 14 C -0.09 -1.69 0.67 -155.00 -0.10 -1.79 16 15 C -0.16 -3.15 5.17 -25.34 -0.13 -3.28 16 16 C 0.13 3.05 7.23 -2.40 -0.02 3.03 16 17 N -0.60 -15.99 3.38 -168.87 -0.57 -16.56 16 18 C -0.22 -6.24 10.36 -15.06 -0.16 -6.40 16 19 H 0.07 2.07 7.84 -52.49 -0.41 1.66 16 20 C -0.01 -0.30 5.41 -17.43 -0.09 -0.40 16 21 N -0.92 -27.33 10.74 55.49 0.60 -26.73 16 22 Si 0.91 22.54 29.56 -169.99 -5.03 17.51 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.17 4.18 5.06 -2.42 -0.01 4.16 16 27 C 0.12 2.02 4.35 -4.09 -0.02 2.00 16 28 N -0.49 -5.24 6.13 -7.33 -0.04 -5.28 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.18 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.16 1.51 7.78 -52.49 -0.41 1.10 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.13 1.38 4.35 -74.09 -0.32 1.06 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.75 7.32 -51.92 -0.38 0.37 16 38 H 0.06 0.91 6.07 -51.93 -0.32 0.59 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 41 H 0.05 0.91 7.38 -51.93 -0.38 0.53 16 42 H 0.04 0.82 6.96 -51.93 -0.36 0.46 16 43 H 0.10 1.95 2.48 -55.52 -0.14 1.81 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.02 0.48 7.48 -51.93 -0.39 0.09 16 48 H 0.09 2.41 6.10 -51.93 -0.32 2.10 16 49 H 0.08 1.55 6.98 -51.93 -0.36 1.18 16 50 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -33.28 375.60 -10.33 -43.61 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.57 Total: 1.03 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.98 Total: 2.98 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -0.48 Total: -62.00 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.28 -10.33 -43.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045985428.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.250 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds