Wall clock time and date at job start Wed Apr 1 2020 03:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31913 * 119.03898 * 2 1 4 4 C 1.32178 * 121.03151 * 179.97438 * 3 2 1 5 5 C 1.38799 * 119.14741 * 0.02562 * 4 3 2 6 6 C 1.39498 * 118.26387 * 359.97438 * 5 4 3 7 7 C 1.48446 * 120.54710 * 180.02562 * 6 5 4 8 8 O 1.21483 * 120.00621 * 11.13650 * 7 6 5 9 9 N 1.34784 * 120.00112 * 191.13366 * 7 6 5 10 10 C 1.47570 * 118.62960 * 5.67204 * 9 7 6 11 11 C 1.54323 * 111.96099 * 137.72348 * 10 9 7 12 12 C 1.50864 * 110.32156 * 319.66405 * 11 10 9 13 13 C 1.52615 * 109.37259 * 91.75849 * 12 11 10 14 14 C 1.47083 * 114.26668 * 275.25833 * 13 12 11 15 15 C 1.54262 * 112.34426 * 301.70841 * 14 13 12 16 16 C 1.54396 * 104.94815 * 237.63929 * 15 14 13 17 17 N 1.48148 * 104.61795 * 23.87111 * 16 15 14 18 18 C 1.36932 * 127.83243 * 140.41198 * 17 16 15 19 19 H 1.07999 * 120.00569 * 346.28505 * 18 17 16 20 20 C 1.38820 * 119.99931 * 166.28843 * 18 17 16 21 21 N 1.31619 * 119.99818 * 351.37636 * 20 18 17 22 22 Si 1.86797 * 119.99930 * 171.37346 * 20 18 17 23 23 H 1.48494 * 109.47201 * 94.77910 * 22 20 18 24 24 H 1.48501 * 109.46990 * 214.78074 * 22 20 18 25 25 H 1.48501 * 109.47503 * 334.77655 * 22 20 18 26 26 C 1.48154 * 104.32866 * 320.43219 * 17 16 15 27 27 C 1.44588 * 118.63900 * 185.93651 * 9 7 6 28 28 N 1.31550 * 119.04526 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46670 * 89.99401 * 1 2 3 30 30 H 1.08995 * 109.46831 * 209.99698 * 1 2 3 31 31 H 1.08997 * 109.47049 * 329.99619 * 1 2 3 32 32 H 1.08006 * 120.42334 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.86849 * 179.97438 * 5 4 3 34 34 H 1.08996 * 108.93833 * 258.54285 * 10 9 7 35 35 H 1.08998 * 108.93876 * 17.14938 * 10 9 7 36 36 H 1.09002 * 109.35540 * 199.35398 * 11 10 9 37 37 H 1.09007 * 109.20496 * 79.87788 * 11 10 9 38 38 H 1.08998 * 109.48753 * 331.79146 * 12 11 10 39 39 H 1.08993 * 109.49276 * 211.72957 * 12 11 10 40 40 H 1.09008 * 108.52584 * 154.02057 * 13 12 11 41 41 H 1.08998 * 108.52791 * 36.50261 * 13 12 11 42 42 H 1.08995 * 110.34622 * 356.50935 * 15 14 13 43 43 H 1.09003 * 110.33918 * 118.77482 * 15 14 13 44 44 H 1.09003 * 110.40397 * 142.65731 * 16 15 14 45 45 H 1.08998 * 110.40431 * 265.08658 * 16 15 14 46 46 H 0.97001 * 119.99952 * 180.02562 * 21 20 18 47 47 H 1.08995 * 110.40853 * 280.76183 * 26 17 16 48 48 H 1.09002 * 110.40523 * 158.33159 * 26 17 16 49 49 H 1.09001 * 109.46465 * 30.59060 * 27 9 7 50 50 H 1.09002 * 109.46547 * 150.56675 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4683 1.1993 0.0005 5 6 4.1861 0.0113 0.0005 6 6 3.4761 -1.1895 0.0005 7 6 4.1925 -2.4896 0.0011 8 8 5.3897 -2.5235 0.2047 9 7 3.5148 -3.6327 -0.2243 10 6 2.0884 -3.5480 -0.5932 11 6 1.7257 -4.5318 -1.7255 12 6 2.8232 -4.5675 -2.7600 13 6 3.8127 -5.6756 -2.4103 14 6 4.8502 -5.2775 -1.4468 15 6 5.6849 -4.0798 -1.9452 16 6 7.1438 -4.5851 -1.9490 17 7 7.0291 -6.0580 -2.0593 18 6 7.8103 -6.9086 -2.7949 19 1 8.4732 -6.5150 -3.5513 20 6 7.7503 -8.2769 -2.5686 21 7 7.0757 -8.7447 -1.5398 22 14 8.6268 -9.4540 -3.7242 23 1 9.9695 -9.7761 -3.1778 24 1 7.8330 -10.7022 -3.8548 25 1 8.7746 -8.8195 -5.0587 26 6 5.8770 -6.4018 -1.1935 27 6 4.2139 -4.8910 -0.0890 28 7 2.1457 -1.1501 0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 3.9825 2.1491 0.0001 33 1 5.2661 0.0164 0.0005 34 1 1.4822 -3.7734 0.2842 35 1 1.8678 -2.5326 -0.9222 36 1 0.7956 -4.2136 -2.1964 37 1 1.5928 -5.5288 -1.3053 38 1 3.3412 -3.6086 -2.7739 39 1 2.3914 -4.7622 -3.7417 40 1 4.3004 -6.0065 -3.3274 41 1 3.2581 -6.5166 -1.9943 42 1 5.3790 -3.7976 -2.9525 43 1 5.5784 -3.2346 -1.2651 44 1 7.6838 -4.1807 -2.8052 45 1 7.6433 -4.3113 -1.0196 46 1 7.0341 -9.7008 -1.3814 47 1 6.1785 -6.4125 -0.1462 48 1 5.4612 -7.3678 -1.4801 49 1 4.9960 -4.7929 0.6639 50 1 3.5110 -5.6661 0.2165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045985428.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:29 Heat of formation + Delta-G solvation = 64.249468 kcal Electronic energy + Delta-G solvation = -32127.903640 eV Core-core repulsion = 28156.873067 eV Total energy + Delta-G solvation = -3971.030573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.71534 -41.58881 -39.47612 -37.70460 -35.51118 -34.52180 -34.37308 -34.18681 -32.60049 -29.95763 -29.41809 -28.76376 -28.01936 -26.20259 -25.97781 -24.61846 -23.90629 -22.38160 -22.05925 -20.77178 -19.54123 -19.15679 -18.81209 -18.17271 -17.62654 -17.09541 -16.70102 -16.63495 -16.32606 -16.01713 -15.89991 -15.36199 -15.14729 -15.07939 -14.74621 -14.53685 -14.41226 -14.14550 -13.89380 -13.57115 -13.43342 -13.23237 -13.15611 -12.99864 -12.83673 -12.65100 -12.44119 -12.22290 -12.10909 -12.02874 -11.98903 -11.79866 -11.77100 -11.44228 -11.36441 -11.21856 -11.15130 -10.96748 -10.74147 -10.47867 -9.99116 -9.50360 -8.87699 -7.88830 -5.24711 -0.61384 -0.12741 1.43231 1.44993 1.54791 1.55831 1.79467 2.47865 2.62650 2.73926 3.04480 3.28709 3.33679 3.66728 3.68742 3.73628 3.91096 3.99797 4.06842 4.08434 4.18808 4.36651 4.42143 4.45842 4.48433 4.51719 4.54811 4.65685 4.76017 4.80794 4.85635 4.90018 4.91731 5.00733 5.06254 5.10655 5.19607 5.23236 5.23461 5.34371 5.37209 5.40237 5.42850 5.46720 5.50358 5.65906 5.74686 5.76481 5.78275 6.21710 6.24909 6.84574 6.98311 7.03536 7.69721 8.50825 9.23600 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022277 B = 0.003049 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.597219 B = 9180.158161 C = 9847.281253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.302 3.698 3 N -0.517 5.517 4 C 0.166 3.834 5 C -0.182 4.182 6 C 0.122 3.878 7 C 0.549 3.451 8 O -0.541 6.541 9 N -0.567 5.567 10 C 0.088 3.912 11 C -0.127 4.127 12 C -0.105 4.105 13 C -0.088 4.088 14 C -0.076 4.076 15 C -0.146 4.146 16 C 0.127 3.873 17 N -0.619 5.619 18 C -0.240 4.240 19 H 0.074 0.926 20 C -0.062 4.062 21 N -0.945 5.945 22 Si 0.979 3.021 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.271 1.271 26 C 0.178 3.822 27 C 0.134 3.866 28 N -0.489 5.489 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.214 0.786 33 H 0.164 0.836 34 H 0.079 0.921 35 H 0.136 0.864 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.028 0.972 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.117 0.883 44 H 0.037 0.963 45 H 0.007 0.993 46 H 0.249 0.751 47 H -0.010 1.010 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.840 20.111 2.929 27.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 N -0.232 5.232 4 C -0.001 4.001 5 C -0.205 4.205 6 C -0.024 4.024 7 C 0.336 3.664 8 O -0.421 6.421 9 N -0.295 5.295 10 C -0.033 4.033 11 C -0.165 4.165 12 C -0.142 4.142 13 C -0.125 4.125 14 C -0.078 4.078 15 C -0.184 4.184 16 C 0.002 3.998 17 N -0.344 5.344 18 C -0.368 4.368 19 H 0.091 0.909 20 C -0.256 4.256 21 N -0.594 5.594 22 Si 0.807 3.193 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.196 1.196 26 C 0.052 3.948 27 C 0.010 3.990 28 N -0.208 5.208 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.230 0.770 33 H 0.181 0.819 34 H 0.097 0.903 35 H 0.152 0.848 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.133 0.867 44 H 0.056 0.944 45 H 0.025 0.975 46 H 0.059 0.941 47 H 0.008 0.992 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.168 19.769 2.995 27.698 hybrid contribution 2.291 -1.327 -0.371 2.673 sum -16.878 18.442 2.624 25.136 Atomic orbital electron populations 1.20758 0.82765 1.05435 1.05318 1.24147 0.99908 0.82868 0.89523 1.68334 1.10971 1.30491 1.13406 1.23955 0.89051 0.99398 0.87739 1.23135 1.04384 0.92934 1.00075 1.21436 0.90683 0.94118 0.96122 1.18287 0.86012 0.84045 0.78027 1.90669 1.14948 1.86412 1.50036 1.47745 1.12654 1.04655 1.64492 1.23282 0.77480 1.04135 0.98397 1.21885 0.98902 1.00168 0.95577 1.20988 0.96043 0.97799 0.99392 1.20253 0.95986 0.98619 0.97676 1.21044 0.95171 0.96236 0.95390 1.23447 0.94125 0.99673 1.01115 1.21706 0.96624 0.84780 0.96707 1.45269 1.33586 1.01926 1.53584 1.19367 1.17790 0.88139 1.11541 0.90869 1.25677 1.01918 0.98455 0.99536 1.70086 1.47186 1.12242 1.29843 0.85061 0.77508 0.78198 0.78521 1.21367 1.21481 1.19551 1.21422 0.86353 0.96147 0.90918 1.21578 0.96105 0.84969 0.96345 1.68490 1.07810 1.30042 1.14456 0.87931 0.88370 0.88479 0.76951 0.81855 0.90295 0.84765 0.87952 0.91655 0.93032 0.91113 0.95267 0.92402 0.93729 0.86653 0.94400 0.97541 0.94149 0.99179 0.92147 0.92166 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.31 71.24 0.73 0.04 16 2 C 0.30 4.80 7.64 138.79 1.06 5.86 16 3 N -0.52 -8.37 10.32 -187.87 -1.94 -10.31 16 4 C 0.17 2.29 11.31 84.78 0.96 3.25 16 5 C -0.18 -3.41 9.72 22.71 0.22 -3.19 16 6 C 0.12 2.82 6.51 41.98 0.27 3.09 16 7 C 0.55 16.15 6.38 86.96 0.55 16.71 16 8 O -0.54 -19.60 13.28 -3.66 -0.05 -19.65 16 9 N -0.57 -15.66 2.03 -820.24 -1.67 -17.33 16 10 C 0.09 1.77 5.30 86.62 0.46 2.23 16 11 C -0.13 -2.45 5.71 30.35 0.17 -2.28 16 12 C -0.10 -2.71 5.35 29.77 0.16 -2.55 16 13 C -0.09 -3.08 3.85 28.63 0.11 -2.97 16 14 C -0.08 -3.00 0.67 -52.50 -0.04 -3.03 16 15 C -0.15 -5.96 5.17 31.50 0.16 -5.80 16 16 C 0.13 6.23 7.23 86.54 0.63 6.85 16 17 N -0.62 -34.87 3.38 -688.18 -2.33 -37.20 16 18 C -0.24 -14.34 10.36 84.04 0.87 -13.47 16 19 H 0.07 4.25 7.84 -2.91 -0.02 4.23 16 20 C -0.06 -3.69 5.41 84.86 0.46 -3.23 16 21 N -0.95 -58.38 10.74 21.65 0.23 -58.15 16 22 Si 0.98 47.30 29.56 68.60 2.03 49.33 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 26 C 0.18 9.22 5.06 86.52 0.44 9.66 16 27 C 0.13 4.50 4.35 87.37 0.38 4.88 16 28 N -0.49 -9.37 6.13 -177.10 -1.09 -10.46 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.21 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.16 2.93 7.78 -2.91 -0.02 2.90 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.14 2.56 4.35 -46.15 -0.20 2.36 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.30 7.32 -2.38 -0.02 1.28 16 38 H 0.05 1.45 6.07 -2.39 -0.01 1.43 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.06 1.96 7.38 -2.39 -0.02 1.95 16 42 H 0.04 1.77 6.96 -2.39 -0.02 1.75 16 43 H 0.12 4.53 2.48 -59.34 -0.15 4.38 16 44 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 47 H -0.01 -0.54 7.48 -2.39 -0.02 -0.56 16 48 H 0.06 3.46 6.10 -2.39 -0.01 3.45 16 49 H 0.06 2.33 6.98 -2.39 -0.02 2.31 16 50 H 0.09 2.74 8.08 -2.39 -0.02 2.72 16 Total: -1.00 -76.05 375.60 3.42 -72.62 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.62 Total: 15.10 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 7.61 Total: 16.04 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -6.79 Total: -133.44 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.05 Total: -19.65 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -76.05 3.42 -72.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045985428.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.872 kcal (2) G-P(sol) polarization free energy of solvation -76.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds