Wall clock time and date at job start Wed Apr 1 2020 03:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47064 * 2 1 4 4 N 1.31922 * 120.17249 * 274.89143 * 3 2 1 5 5 N 1.28281 * 122.32304 * 179.97438 * 4 3 2 6 6 C 1.31908 * 122.52008 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.01838 * 180.02562 * 6 5 4 8 8 C 1.38507 * 119.96880 * 359.72417 * 6 5 4 9 9 C 1.39732 * 120.17077 * 94.87014 * 3 2 1 10 10 C 1.48136 * 121.14523 * 0.02562 * 9 3 2 11 11 O 1.21511 * 119.99720 * 244.82883 * 10 9 3 12 12 N 1.34779 * 120.00067 * 64.82687 * 10 9 3 13 13 C 1.46494 * 119.99943 * 184.88715 * 12 10 9 14 14 H 1.09001 * 109.32161 * 50.17299 * 13 12 10 15 15 C 1.53027 * 109.32791 * 290.53155 * 13 12 10 16 16 C 1.53971 * 108.82380 * 295.14115 * 15 13 12 17 17 H 1.09002 * 112.99313 * 168.08835 * 16 15 13 18 18 C 1.55427 * 106.41598 * 293.82083 * 16 15 13 19 19 C 1.55167 * 100.35423 * 73.37624 * 18 16 15 20 20 H 1.09006 * 112.48174 * 162.66503 * 19 18 16 21 21 C 1.52985 * 109.32605 * 169.63960 * 13 12 10 22 22 N 1.47792 * 104.25374 * 40.55568 * 19 18 16 23 23 C 1.36941 * 125.85806 * 153.55194 * 22 19 18 24 24 H 1.08000 * 119.99836 * 6.26944 * 23 22 19 25 25 C 1.38814 * 120.00020 * 186.26997 * 23 22 19 26 26 N 1.31623 * 119.99892 * 355.07504 * 25 23 22 27 27 Si 1.86798 * 119.99930 * 175.07870 * 25 23 22 28 28 H 1.48499 * 109.47084 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47093 * 119.99823 * 27 25 23 30 30 H 1.48501 * 109.46930 * 239.99903 * 27 25 23 31 31 C 1.47081 * 108.28386 * 333.52887 * 22 19 18 32 32 H 1.08998 * 109.47190 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47056 * 299.99989 * 1 2 3 34 34 H 1.08998 * 109.47219 * 59.99932 * 1 2 3 35 35 H 1.09003 * 109.47056 * 240.00011 * 2 1 3 36 36 H 1.08998 * 109.47219 * 120.00068 * 2 1 3 37 37 H 1.09001 * 109.46944 * 95.02275 * 7 6 5 38 38 H 1.09001 * 109.47437 * 215.02331 * 7 6 5 39 39 H 1.09001 * 109.47123 * 335.02643 * 7 6 5 40 40 H 1.07997 * 121.09447 * 180.30264 * 8 6 5 41 41 H 0.97004 * 119.99846 * 5.17031 * 12 10 9 42 42 H 1.09000 * 109.58317 * 54.94404 * 15 13 12 43 43 H 1.09000 * 109.58161 * 175.21241 * 15 13 12 44 44 H 1.09001 * 111.23206 * 191.15596 * 18 16 15 45 45 H 1.09001 * 111.23388 * 315.59930 * 18 16 15 46 46 H 1.09000 * 109.53544 * 185.06474 * 21 13 12 47 47 H 1.09008 * 109.53291 * 305.29559 * 21 13 12 48 48 H 0.96996 * 119.99811 * 184.95442 * 26 25 23 49 49 H 1.08996 * 109.97438 * 241.74917 * 31 22 19 50 50 H 1.09006 * 109.97842 * 120.46928 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1616 2.0784 -1.1363 5 7 2.5846 3.2885 -1.1843 6 6 2.9209 3.9655 -0.1033 7 6 3.4108 5.3855 -0.2249 8 6 2.8178 3.3727 1.1443 9 6 2.3631 2.0487 1.2037 10 6 2.2306 1.3414 2.4985 11 8 1.4295 1.7315 3.3246 12 7 2.9987 0.2653 2.7602 13 6 2.7942 -0.4981 3.9936 14 1 1.7362 -0.7393 4.0973 15 6 3.2412 0.3441 5.1905 16 6 4.7591 0.5824 5.0911 17 1 5.1176 1.3403 5.7877 18 6 5.4343 -0.8062 5.2686 19 6 5.1015 -1.4552 3.8990 20 1 5.7296 -2.3198 3.6839 21 6 3.6012 -1.7960 3.9255 22 7 5.2921 -0.3623 2.9226 23 6 5.6169 -0.5150 1.6010 24 1 5.6573 -1.5024 1.1655 25 6 5.8943 0.5995 0.8213 26 7 5.7511 1.8071 1.3248 27 14 6.4706 0.3853 -0.9426 28 1 6.5503 -1.0621 -1.2650 29 1 5.5086 1.0453 -1.8613 30 1 7.8118 1.0023 -1.1035 31 6 5.0724 0.9173 3.6136 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 2.5765 6.0714 -0.0781 38 1 4.1729 5.5731 0.5314 39 1 3.8371 5.5390 -1.2163 40 1 3.0836 3.9117 2.0416 41 1 3.6897 -0.0013 2.1337 42 1 2.7197 1.3012 5.1789 43 1 3.0125 -0.1853 6.1155 44 1 6.5109 -0.7069 5.4073 45 1 4.9823 -1.3629 6.0896 46 1 3.3819 -2.4079 4.8005 47 1 3.3358 -2.3432 3.0209 48 1 5.8751 2.5859 0.7600 49 1 4.2301 1.4433 3.1643 50 1 5.9706 1.5320 3.5535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047098917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:46 Heat of formation + Delta-G solvation = 88.030857 kcal Electronic energy + Delta-G solvation = -33950.188676 eV Core-core repulsion = 29980.189341 eV Total energy + Delta-G solvation = -3969.999335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.16219 -40.34174 -37.95690 -34.91342 -33.83190 -33.34722 -32.95026 -31.27145 -30.83874 -30.33324 -28.02860 -27.60428 -25.46295 -24.75947 -23.94183 -23.28007 -21.85038 -21.36902 -19.96195 -19.60751 -18.85568 -17.62705 -17.21033 -16.50899 -15.60550 -15.56453 -15.28929 -14.69277 -14.60216 -14.18050 -13.90488 -13.70797 -13.64725 -13.32452 -13.02243 -12.84348 -12.67417 -12.52939 -12.31904 -12.11513 -12.04303 -11.96921 -11.84980 -11.73950 -11.60726 -11.55855 -11.08050 -10.94835 -10.88521 -10.68998 -10.36649 -10.16537 -9.98148 -9.93621 -9.75024 -9.69204 -9.54062 -9.40207 -9.03480 -8.91966 -8.84637 -7.63829 -7.03817 -5.98224 -3.37113 1.14588 1.36862 3.15638 3.27388 3.33078 3.39772 3.76672 4.06346 4.27862 4.32789 4.80066 4.94682 5.06957 5.13598 5.17753 5.21500 5.31404 5.38351 5.39922 5.47170 5.52718 5.53435 5.66401 5.72343 5.72558 5.82427 5.83044 5.87140 6.00998 6.07102 6.07720 6.11422 6.15151 6.17919 6.20315 6.24444 6.35953 6.38714 6.52662 6.54443 6.62599 6.66395 6.73151 6.79886 6.84765 7.28067 7.41788 7.50915 7.67511 7.99342 8.42986 8.90807 9.05970 9.18183 9.52783 10.19888 11.06421 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010365 B = 0.006476 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.801315 B = 4322.408459 C = 5135.918254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C 0.097 3.903 4 N -0.244 5.244 5 N -0.242 5.242 6 C 0.061 3.939 7 C -0.095 4.095 8 C -0.051 4.051 9 C -0.085 4.085 10 C 0.557 3.443 11 O -0.561 6.561 12 N -0.677 5.677 13 C 0.159 3.841 14 H 0.063 0.937 15 C -0.125 4.125 16 C -0.121 4.121 17 H 0.075 0.925 18 C -0.126 4.126 19 C 0.149 3.851 20 H 0.068 0.932 21 C -0.141 4.141 22 N -0.595 5.595 23 C -0.261 4.261 24 H 0.082 0.918 25 C 0.011 3.989 26 N -0.898 5.898 27 Si 0.891 3.109 28 H -0.277 1.277 29 H -0.282 1.282 30 H -0.287 1.287 31 C 0.149 3.851 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.146 0.854 41 H 0.442 0.558 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.254 0.746 49 H 0.074 0.926 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.508 -1.266 3.974 6.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.048 4.048 4 N -0.085 5.085 5 N -0.085 5.085 6 C -0.084 4.084 7 C -0.153 4.153 8 C -0.080 4.080 9 C -0.099 4.099 10 C 0.341 3.659 11 O -0.442 6.442 12 N -0.344 5.344 13 C 0.053 3.947 14 H 0.081 0.919 15 C -0.163 4.163 16 C -0.140 4.140 17 H 0.094 0.906 18 C -0.165 4.165 19 C 0.042 3.958 20 H 0.086 0.914 21 C -0.181 4.181 22 N -0.322 5.322 23 C -0.388 4.388 24 H 0.100 0.900 25 C -0.189 4.189 26 N -0.543 5.543 27 Si 0.721 3.279 28 H -0.202 1.202 29 H -0.209 1.209 30 H -0.214 1.214 31 C 0.025 3.975 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.164 0.836 41 H 0.300 0.700 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.091 0.909 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.028 -0.925 2.645 6.647 hybrid contribution 1.107 -0.106 0.433 1.194 sum -4.920 -1.031 3.078 5.895 Atomic orbital electron populations 1.21702 0.94002 1.02106 1.02258 1.20550 0.96481 0.89988 1.04716 1.22742 0.94909 0.97883 0.89246 1.72802 1.10233 1.01494 1.23951 1.72682 1.07483 1.01247 1.27054 1.22625 0.96880 0.98625 0.90228 1.20611 1.01344 0.89272 1.04107 1.22055 0.93408 0.93468 0.99072 1.20868 0.98718 0.95160 0.95137 1.17931 0.81065 0.81572 0.85324 1.90697 1.38766 1.67338 1.47416 1.47779 1.36111 1.26882 1.23669 1.20691 0.98041 0.91111 0.84819 0.91910 1.22090 0.96489 1.00901 0.96834 1.22831 0.94369 0.96552 1.00238 0.90633 1.22959 0.99836 0.96650 0.97042 1.21629 0.92545 0.92388 0.89252 0.91378 1.22533 0.98690 0.95623 1.01289 1.44959 1.80782 1.00923 1.05549 1.19140 1.42240 0.93644 0.83753 0.90044 1.24812 1.00283 0.95353 0.98421 1.69990 1.53376 0.96740 1.34157 0.86345 0.78942 0.77949 0.84711 1.20180 1.20851 1.21382 1.22056 1.01234 0.88179 0.86039 0.91761 0.92629 0.92204 0.89306 0.89381 0.90434 0.90095 0.90298 0.83578 0.69985 0.90941 0.92321 0.92104 0.92092 0.91537 0.91908 0.93576 0.90894 0.93936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.89 37.16 0.37 -1.67 16 2 C -0.08 -1.33 5.98 -27.88 -0.17 -1.49 16 3 C 0.10 1.93 6.16 -82.00 -0.51 1.43 16 4 N -0.24 -5.08 11.42 33.81 0.39 -4.70 16 5 N -0.24 -4.91 11.41 33.57 0.38 -4.53 16 6 C 0.06 1.11 6.86 -82.46 -0.57 0.54 16 7 C -0.09 -1.28 10.17 36.01 0.37 -0.91 16 8 C -0.05 -0.96 9.69 -38.78 -0.38 -1.34 16 9 C -0.08 -1.71 5.68 -104.57 -0.59 -2.31 16 10 C 0.56 11.37 4.66 -12.20 -0.06 11.31 16 11 O -0.56 -12.24 15.67 5.36 0.08 -12.16 16 12 N -0.68 -13.20 1.55 -54.66 -0.08 -13.29 16 13 C 0.16 2.73 2.73 -67.93 -0.19 2.54 16 14 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 15 C -0.12 -2.09 5.15 -26.21 -0.13 -2.23 16 16 C -0.12 -2.13 4.33 -87.93 -0.38 -2.52 16 17 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 18 C -0.13 -2.03 6.18 -24.30 -0.15 -2.18 16 19 C 0.15 2.64 4.30 -65.62 -0.28 2.36 16 20 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 21 C -0.14 -2.20 5.42 -26.28 -0.14 -2.34 16 22 N -0.60 -12.73 1.77 -161.37 -0.28 -13.01 16 23 C -0.26 -6.19 8.51 -15.06 -0.13 -6.32 16 24 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 25 C 0.01 0.27 5.38 -17.43 -0.09 0.17 16 26 N -0.90 -22.42 10.38 55.49 0.58 -21.84 16 27 Si 0.89 20.89 29.56 -169.99 -5.02 15.86 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 31 C 0.15 3.20 3.90 -2.83 -0.01 3.19 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.09 1.53 5.91 -51.93 -0.31 1.22 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.15 2.57 8.06 -52.49 -0.42 2.15 16 41 H 0.44 9.33 3.68 -40.82 -0.15 9.18 16 42 H 0.07 1.35 6.63 -51.93 -0.34 1.01 16 43 H 0.06 0.84 7.98 -51.93 -0.41 0.43 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 0.83 7.75 -51.93 -0.40 0.43 16 46 H 0.07 0.86 8.00 -51.93 -0.42 0.45 16 47 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 48 H 0.25 6.43 8.32 -40.82 -0.34 6.09 16 49 H 0.07 1.66 3.56 -58.47 -0.21 1.45 16 50 H 0.04 1.06 7.19 -51.93 -0.37 0.69 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -28.04 380.61 -8.92 -36.96 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -7.65 Total: 12.73 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -3.04 Total: -1.76 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.98 Total: -57.38 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.04 -8.92 -36.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047098917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.989 kcal (2) G-P(sol) polarization free energy of solvation -28.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds