Wall clock time and date at job start Wed Apr 1 2020 03:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47064 * 2 1 4 4 N 1.31922 * 120.17249 * 274.89143 * 3 2 1 5 5 N 1.28281 * 122.32304 * 179.97438 * 4 3 2 6 6 C 1.31908 * 122.52008 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.01838 * 180.02562 * 6 5 4 8 8 C 1.38507 * 119.96880 * 359.72417 * 6 5 4 9 9 C 1.39732 * 120.17077 * 94.87014 * 3 2 1 10 10 C 1.48136 * 121.14523 * 0.02562 * 9 3 2 11 11 O 1.21511 * 119.99720 * 244.82883 * 10 9 3 12 12 N 1.34779 * 120.00067 * 64.82687 * 10 9 3 13 13 C 1.46494 * 119.99943 * 184.88715 * 12 10 9 14 14 H 1.09001 * 109.32161 * 50.17299 * 13 12 10 15 15 C 1.53027 * 109.32791 * 290.53155 * 13 12 10 16 16 C 1.53971 * 108.82380 * 295.14115 * 15 13 12 17 17 H 1.09002 * 112.99313 * 168.08835 * 16 15 13 18 18 C 1.55427 * 106.41598 * 293.82083 * 16 15 13 19 19 C 1.55167 * 100.35423 * 73.37624 * 18 16 15 20 20 H 1.09006 * 112.48174 * 162.66503 * 19 18 16 21 21 C 1.52985 * 109.32605 * 169.63960 * 13 12 10 22 22 N 1.47792 * 104.25374 * 40.55568 * 19 18 16 23 23 C 1.36941 * 125.85806 * 153.55194 * 22 19 18 24 24 H 1.08000 * 119.99836 * 6.26944 * 23 22 19 25 25 C 1.38814 * 120.00020 * 186.26997 * 23 22 19 26 26 N 1.31623 * 119.99892 * 355.07504 * 25 23 22 27 27 Si 1.86798 * 119.99930 * 175.07870 * 25 23 22 28 28 H 1.48499 * 109.47084 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47093 * 119.99823 * 27 25 23 30 30 H 1.48501 * 109.46930 * 239.99903 * 27 25 23 31 31 C 1.47081 * 108.28386 * 333.52887 * 22 19 18 32 32 H 1.08998 * 109.47190 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47056 * 299.99989 * 1 2 3 34 34 H 1.08998 * 109.47219 * 59.99932 * 1 2 3 35 35 H 1.09003 * 109.47056 * 240.00011 * 2 1 3 36 36 H 1.08998 * 109.47219 * 120.00068 * 2 1 3 37 37 H 1.09001 * 109.46944 * 95.02275 * 7 6 5 38 38 H 1.09001 * 109.47437 * 215.02331 * 7 6 5 39 39 H 1.09001 * 109.47123 * 335.02643 * 7 6 5 40 40 H 1.07997 * 121.09447 * 180.30264 * 8 6 5 41 41 H 0.97004 * 119.99846 * 5.17031 * 12 10 9 42 42 H 1.09000 * 109.58317 * 54.94404 * 15 13 12 43 43 H 1.09000 * 109.58161 * 175.21241 * 15 13 12 44 44 H 1.09001 * 111.23206 * 191.15596 * 18 16 15 45 45 H 1.09001 * 111.23388 * 315.59930 * 18 16 15 46 46 H 1.09000 * 109.53544 * 185.06474 * 21 13 12 47 47 H 1.09008 * 109.53291 * 305.29559 * 21 13 12 48 48 H 0.96996 * 119.99811 * 184.95442 * 26 25 23 49 49 H 1.08996 * 109.97438 * 241.74917 * 31 22 19 50 50 H 1.09006 * 109.97842 * 120.46928 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1616 2.0784 -1.1363 5 7 2.5846 3.2885 -1.1843 6 6 2.9209 3.9655 -0.1033 7 6 3.4108 5.3855 -0.2249 8 6 2.8178 3.3727 1.1443 9 6 2.3631 2.0487 1.2037 10 6 2.2306 1.3414 2.4985 11 8 1.4295 1.7315 3.3246 12 7 2.9987 0.2653 2.7602 13 6 2.7942 -0.4981 3.9936 14 1 1.7362 -0.7393 4.0973 15 6 3.2412 0.3441 5.1905 16 6 4.7591 0.5824 5.0911 17 1 5.1176 1.3403 5.7877 18 6 5.4343 -0.8062 5.2686 19 6 5.1015 -1.4552 3.8990 20 1 5.7296 -2.3198 3.6839 21 6 3.6012 -1.7960 3.9255 22 7 5.2921 -0.3623 2.9226 23 6 5.6169 -0.5150 1.6010 24 1 5.6573 -1.5024 1.1655 25 6 5.8943 0.5995 0.8213 26 7 5.7511 1.8071 1.3248 27 14 6.4706 0.3853 -0.9426 28 1 6.5503 -1.0621 -1.2650 29 1 5.5086 1.0453 -1.8613 30 1 7.8118 1.0023 -1.1035 31 6 5.0724 0.9173 3.6136 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 2.5765 6.0714 -0.0781 38 1 4.1729 5.5731 0.5314 39 1 3.8371 5.5390 -1.2163 40 1 3.0836 3.9117 2.0416 41 1 3.6897 -0.0013 2.1337 42 1 2.7197 1.3012 5.1789 43 1 3.0125 -0.1853 6.1155 44 1 6.5109 -0.7069 5.4073 45 1 4.9823 -1.3629 6.0896 46 1 3.3819 -2.4079 4.8005 47 1 3.3358 -2.3432 3.0209 48 1 5.8751 2.5859 0.7600 49 1 4.2301 1.4433 3.1643 50 1 5.9706 1.5320 3.5535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047098917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:45 Heat of formation + Delta-G solvation = 74.165383 kcal Electronic energy + Delta-G solvation = -33950.789928 eV Core-core repulsion = 29980.189341 eV Total energy + Delta-G solvation = -3970.600587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.65105 -41.81281 -39.50773 -36.30177 -35.52402 -34.84700 -34.42848 -32.62521 -32.38189 -31.83994 -29.51833 -28.89080 -27.13294 -26.22582 -25.29390 -24.85513 -23.22562 -22.74975 -21.50192 -21.14407 -20.30272 -19.15291 -18.85155 -18.03297 -17.10182 -17.02269 -16.86632 -16.35264 -16.15112 -15.69101 -15.30484 -15.28439 -15.06138 -14.65014 -14.45407 -14.16323 -14.06467 -13.93041 -13.87622 -13.47067 -13.32793 -13.29545 -13.25578 -13.13431 -13.07154 -12.88698 -12.83073 -12.67561 -12.28503 -12.13529 -11.91689 -11.79326 -11.69013 -11.44892 -11.29077 -11.07312 -11.07018 -10.81394 -10.69946 -10.47893 -10.42183 -9.18534 -8.78411 -7.86458 -5.21955 -0.37730 -0.09870 1.34519 1.41134 1.46656 1.59543 2.29326 2.40323 2.58521 2.94011 3.29101 3.37655 3.55062 3.61294 3.73077 3.84029 3.89442 4.00612 4.01339 4.08524 4.16995 4.27001 4.37419 4.41047 4.46913 4.48382 4.60408 4.66935 4.69530 4.75605 4.81667 4.88819 4.90046 4.91834 4.94013 4.96506 5.10347 5.16071 5.16742 5.19846 5.28747 5.31431 5.36969 5.41637 5.52300 5.58848 5.79454 5.82384 5.90830 6.18918 6.84877 7.09710 7.43606 7.67054 7.74938 8.40606 9.15511 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010365 B = 0.006476 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.801315 B = 4322.408459 C = 5135.918254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 C 0.088 3.912 4 N -0.266 5.266 5 N -0.266 5.266 6 C 0.061 3.939 7 C -0.092 4.092 8 C -0.060 4.060 9 C -0.103 4.103 10 C 0.559 3.441 11 O -0.581 6.581 12 N -0.676 5.676 13 C 0.147 3.853 14 H 0.072 0.928 15 C -0.116 4.116 16 C -0.118 4.118 17 H 0.082 0.918 18 C -0.113 4.113 19 C 0.138 3.862 20 H 0.074 0.926 21 C -0.130 4.130 22 N -0.605 5.605 23 C -0.249 4.249 24 H 0.083 0.917 25 C -0.023 4.023 26 N -0.905 5.905 27 Si 0.925 3.075 28 H -0.265 1.265 29 H -0.308 1.308 30 H -0.299 1.299 31 C 0.154 3.846 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.154 0.846 41 H 0.436 0.564 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.060 0.940 48 H 0.242 0.758 49 H 0.059 0.941 50 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.137 -2.968 5.842 8.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.118 4.118 3 C -0.058 4.058 4 N -0.106 5.106 5 N -0.108 5.108 6 C -0.084 4.084 7 C -0.150 4.150 8 C -0.089 4.089 9 C -0.117 4.117 10 C 0.343 3.657 11 O -0.464 6.464 12 N -0.340 5.340 13 C 0.043 3.957 14 H 0.090 0.910 15 C -0.154 4.154 16 C -0.137 4.137 17 H 0.100 0.900 18 C -0.151 4.151 19 C 0.033 3.967 20 H 0.092 0.908 21 C -0.169 4.169 22 N -0.332 5.332 23 C -0.377 4.377 24 H 0.101 0.899 25 C -0.221 4.221 26 N -0.552 5.552 27 Si 0.756 3.244 28 H -0.189 1.189 29 H -0.236 1.236 30 H -0.226 1.226 31 C 0.029 3.971 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.171 0.829 41 H 0.292 0.708 42 H 0.067 0.933 43 H 0.113 0.887 44 H 0.072 0.928 45 H 0.118 0.882 46 H 0.125 0.875 47 H 0.079 0.921 48 H 0.052 0.948 49 H 0.077 0.923 50 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -6.651 -2.678 4.531 8.481 hybrid contribution 1.342 0.419 -0.119 1.411 sum -5.309 -2.258 4.411 7.262 Atomic orbital electron populations 1.21649 0.91899 1.03848 1.01683 1.20644 0.98248 0.88343 1.04535 1.23120 0.94783 0.99013 0.88855 1.72720 1.11141 1.02092 1.24672 1.72616 1.08523 1.01481 1.28140 1.23240 0.95560 1.00236 0.89333 1.20763 1.02612 0.86903 1.04756 1.22297 0.93332 0.93482 0.99834 1.21068 0.99323 0.95835 0.95437 1.17934 0.80917 0.81709 0.85149 1.90670 1.39726 1.67956 1.48033 1.47834 1.35284 1.26589 1.24342 1.21008 0.99028 0.91686 0.83971 0.91028 1.22025 0.95029 1.00194 0.98195 1.22781 0.95567 0.97931 0.97412 0.89993 1.22925 0.99610 0.95391 0.97212 1.21932 0.94227 0.91529 0.89058 0.90773 1.22450 0.96275 0.95030 1.03182 1.45069 1.80471 1.02237 1.05380 1.19276 1.40125 0.93278 0.85069 0.89875 1.25107 1.01748 0.95729 0.99501 1.70111 1.54761 0.96544 1.33745 0.85806 0.77277 0.77947 0.83324 1.18938 1.23589 1.22645 1.21874 0.98488 0.87859 0.88845 0.88824 0.93725 0.92168 0.88957 0.89870 0.87583 0.88967 0.89879 0.82852 0.70834 0.93260 0.88747 0.92802 0.88207 0.87466 0.92083 0.94772 0.92327 0.98457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 9.89 71.98 0.71 -2.97 16 2 C -0.08 -2.66 5.98 29.85 0.18 -2.48 16 3 C 0.09 3.57 6.16 42.91 0.26 3.83 16 4 N -0.27 -11.39 11.42 -46.95 -0.54 -11.92 16 5 N -0.27 -11.04 11.41 -47.70 -0.54 -11.59 16 6 C 0.06 2.26 6.86 42.61 0.29 2.56 16 7 C -0.09 -2.43 10.17 71.24 0.72 -1.71 16 8 C -0.06 -2.33 9.69 22.79 0.22 -2.11 16 9 C -0.10 -4.24 5.68 -19.83 -0.11 -4.35 16 10 C 0.56 22.91 4.66 86.87 0.40 23.31 16 11 O -0.58 -25.38 15.67 -3.75 -0.06 -25.44 16 12 N -0.68 -25.87 1.55 -445.13 -0.69 -26.56 16 13 C 0.15 4.67 2.73 45.00 0.12 4.79 16 14 H 0.07 2.18 8.09 -2.39 -0.02 2.16 16 15 C -0.12 -3.55 5.15 30.93 0.16 -3.39 16 16 C -0.12 -3.91 4.33 -9.05 -0.04 -3.95 16 17 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 18 C -0.11 -3.21 6.18 32.17 0.20 -3.01 16 19 C 0.14 4.46 4.30 45.78 0.20 4.66 16 20 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 21 C -0.13 -3.52 5.42 30.88 0.17 -3.35 16 22 N -0.60 -25.26 1.77 -664.45 -1.17 -26.43 16 23 C -0.25 -11.74 8.51 84.03 0.71 -11.03 16 24 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 25 C -0.02 -1.16 5.38 84.86 0.46 -0.70 16 26 N -0.91 -46.48 10.38 21.65 0.22 -46.26 16 27 Si 0.92 43.76 29.56 68.60 2.03 45.78 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 29 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 30 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 31 C 0.15 6.60 3.90 86.85 0.34 6.94 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.08 2.86 5.91 -2.39 -0.01 2.85 16 37 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.09 2.22 8.12 -2.39 -0.02 2.20 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.15 5.57 8.06 -2.91 -0.02 5.55 16 41 H 0.44 18.23 3.68 -92.71 -0.34 17.88 16 42 H 0.05 1.76 6.63 -2.39 -0.02 1.74 16 43 H 0.09 2.24 7.98 -2.39 -0.02 2.22 16 44 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.10 2.11 7.75 -2.39 -0.02 2.09 16 46 H 0.11 2.11 8.00 -2.39 -0.02 2.09 16 47 H 0.06 1.70 8.14 -2.38 -0.02 1.69 16 48 H 0.24 12.74 8.32 -92.71 -0.77 11.97 16 49 H 0.06 2.70 3.56 -15.29 -0.05 2.65 16 50 H 0.00 -0.15 7.19 -2.38 -0.02 -0.16 16 Total: -1.00 -62.84 380.61 4.82 -58.01 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: 0.57 Total: 37.35 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 5.00 Total: 7.04 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -2.72 Total: -122.75 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.06 Total: -25.44 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -62.84 4.82 -58.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047098917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.179 kcal (2) G-P(sol) polarization free energy of solvation -62.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds