Wall clock time and date at job start Wed Apr 1 2020 03:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.46825 * 2 1 4 4 C 1.38552 * 120.01575 * 125.94835 * 3 2 1 5 5 C 1.40077 * 117.81994 * 180.25800 * 4 3 2 6 6 C 1.48134 * 121.14858 * 179.73822 * 5 4 3 7 7 O 1.21513 * 120.00307 * 217.62108 * 6 5 4 8 8 N 1.34781 * 119.99833 * 37.62787 * 6 5 4 9 9 C 1.46494 * 120.00144 * 183.98483 * 8 6 5 10 10 H 1.09001 * 109.17581 * 50.06962 * 9 8 6 11 11 C 1.53024 * 109.32828 * 290.51837 * 9 8 6 12 12 C 1.53977 * 108.93254 * 295.20476 * 11 9 8 13 13 H 1.09001 * 112.99200 * 168.02107 * 12 11 9 14 14 C 1.55421 * 106.41629 * 293.75408 * 12 11 9 15 15 C 1.55174 * 100.35219 * 73.37609 * 14 12 11 16 16 H 1.09008 * 112.48456 * 162.66977 * 15 14 12 17 17 C 1.53878 * 107.26479 * 286.72747 * 15 14 12 18 18 N 1.47789 * 104.25309 * 40.55386 * 15 14 12 19 19 C 1.36937 * 125.85517 * 153.56846 * 18 15 14 20 20 H 1.08006 * 120.00334 * 7.00754 * 19 18 15 21 21 C 1.38810 * 120.00119 * 187.00500 * 19 18 15 22 22 N 1.31617 * 120.00050 * 354.22887 * 21 19 18 23 23 Si 1.86807 * 120.00148 * 174.21919 * 21 19 18 24 24 H 1.48498 * 109.46594 * 90.88978 * 23 21 19 25 25 H 1.48500 * 109.46796 * 210.88527 * 23 21 19 26 26 H 1.48494 * 109.47013 * 330.88687 * 23 21 19 27 27 C 1.47074 * 108.28787 * 333.53095 * 18 15 14 28 28 C 1.39773 * 117.70210 * 359.47678 * 5 4 3 29 29 C 1.50700 * 120.16672 * 180.24652 * 28 5 4 30 30 N 1.31896 * 119.65638 * 0.26671 * 28 5 4 31 31 N 1.28268 * 122.32895 * 0.02562 * 30 28 5 32 32 H 1.09005 * 109.47200 * 185.02589 * 1 2 3 33 33 H 1.08998 * 109.47812 * 305.02940 * 1 2 3 34 34 H 1.08998 * 109.47262 * 65.03145 * 1 2 3 35 35 H 1.08998 * 109.47133 * 239.99623 * 2 1 3 36 36 H 1.09006 * 109.46693 * 120.00050 * 2 1 3 37 37 H 1.07998 * 121.09294 * 0.02562 * 4 3 2 38 38 H 0.97001 * 119.99499 * 3.98724 * 8 6 5 39 39 H 1.08995 * 109.58294 * 175.34106 * 11 9 8 40 40 H 1.09002 * 109.58464 * 55.07388 * 11 9 8 41 41 H 1.08999 * 111.23600 * 191.15418 * 14 12 11 42 42 H 1.08999 * 111.23544 * 315.59937 * 14 12 11 43 43 H 1.08999 * 109.53743 * 185.71598 * 17 15 14 44 44 H 1.09002 * 109.52949 * 305.86414 * 17 15 14 45 45 H 0.96994 * 120.00503 * 184.81932 * 22 21 19 46 46 H 1.09004 * 109.97601 * 241.75034 * 27 18 15 47 47 H 1.09002 * 110.00964 * 120.48480 * 27 18 15 48 48 H 1.09002 * 109.46697 * 83.48759 * 29 28 5 49 49 H 1.08998 * 109.46924 * 203.47945 * 29 28 5 50 50 H 1.09000 * 109.47336 * 323.48484 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9273 1.8395 0.9712 5 6 3.3598 3.1712 0.9310 6 6 4.3114 3.6984 1.9365 7 8 4.1869 4.8324 2.3549 8 7 5.3154 2.9203 2.3870 9 6 6.2036 3.4097 3.4443 10 1 5.6019 3.7920 4.2689 11 6 7.0775 4.5371 2.8901 12 6 7.9999 3.9636 1.7987 13 1 8.5013 4.7363 1.2158 14 6 8.9718 2.9847 2.5148 15 6 8.0114 1.8009 2.8050 16 1 8.5446 0.8786 3.0361 17 6 7.0778 2.2395 3.9468 18 7 7.1927 1.6878 1.5798 19 6 6.5833 0.5491 1.1246 20 1 6.5854 -0.3442 1.7316 21 6 5.9627 0.5429 -0.1171 22 7 5.8603 1.6590 -0.8072 23 14 5.2731 -1.0495 -0.8087 24 1 3.8540 -1.1946 -0.3964 25 1 5.3577 -1.0229 -2.2911 26 1 6.0596 -2.1966 -0.2885 27 6 7.1440 3.0082 0.9338 28 6 2.8669 3.9839 -0.0938 29 6 3.2998 5.4240 -0.1929 30 7 2.0206 3.4839 -0.9733 31 7 1.6240 2.2649 -0.9275 32 1 -0.3634 -1.0238 0.0900 33 1 -0.3635 0.5898 0.8415 34 1 -0.3634 0.4338 -0.9316 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8901 37 1 3.2770 1.1624 1.7365 38 1 5.4500 2.0363 2.0112 39 1 7.6810 4.9599 3.6932 40 1 6.4438 5.3136 2.4617 41 1 9.7842 2.6813 1.8545 42 1 9.3570 3.4161 3.4387 43 1 6.4533 1.3992 4.2502 44 1 7.6732 2.5760 4.7955 45 1 5.3661 1.6696 -1.6417 46 1 6.1148 3.3647 0.8923 47 1 7.5573 2.9463 -0.0730 48 1 4.2534 5.4813 -0.7177 49 1 2.5486 5.9922 -0.7414 50 1 3.4105 5.8399 0.8085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047116155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:50 Heat of formation + Delta-G solvation = 87.744413 kcal Electronic energy + Delta-G solvation = -33719.534878 eV Core-core repulsion = 29749.523122 eV Total energy + Delta-G solvation = -3970.011756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.11414 -40.32532 -37.99095 -34.87186 -33.84449 -33.44892 -32.82791 -31.21167 -30.85128 -30.30834 -28.11369 -27.30110 -25.44502 -25.22909 -23.28424 -23.07583 -22.46209 -21.35421 -19.91260 -19.61359 -18.85355 -17.40815 -17.10171 -16.69430 -15.56292 -15.20397 -15.18125 -14.92261 -14.66787 -14.45703 -14.08401 -13.83826 -13.66577 -13.30528 -12.90716 -12.62040 -12.58041 -12.54833 -12.31487 -12.06930 -11.94890 -11.86013 -11.79871 -11.74184 -11.66218 -11.51026 -11.04584 -11.02959 -10.86219 -10.69232 -10.36692 -10.22693 -9.98681 -9.84651 -9.76379 -9.68166 -9.57549 -9.42126 -8.95780 -8.87122 -8.81033 -7.65092 -7.04765 -5.98554 -3.38603 1.03488 1.39565 3.16591 3.26856 3.28756 3.32430 3.80420 4.14046 4.23219 4.36756 4.79674 4.94682 5.07294 5.12996 5.14615 5.15828 5.31417 5.36203 5.40676 5.47789 5.52482 5.55460 5.69069 5.78127 5.81122 5.84023 5.96315 5.99830 6.00441 6.05009 6.07886 6.09951 6.19103 6.19413 6.23054 6.34029 6.34770 6.38545 6.52130 6.59827 6.65587 6.71987 6.75566 6.79943 6.85706 7.29565 7.39536 7.52085 7.67725 7.98931 8.42841 8.89412 9.04506 9.19793 9.51396 10.19822 11.05289 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.006211 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.376766 B = 4507.390996 C = 5820.263387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 C 0.062 3.938 4 C -0.061 4.061 5 C -0.093 4.093 6 C 0.553 3.447 7 O -0.559 6.559 8 N -0.677 5.677 9 C 0.159 3.841 10 H 0.063 0.937 11 C -0.123 4.123 12 C -0.121 4.121 13 H 0.076 0.924 14 C -0.126 4.126 15 C 0.149 3.851 16 H 0.066 0.934 17 C -0.140 4.140 18 N -0.595 5.595 19 C -0.266 4.266 20 H 0.080 0.920 21 C 0.012 3.988 22 N -0.894 5.894 23 Si 0.886 3.114 24 H -0.271 1.271 25 H -0.289 1.289 26 H -0.281 1.281 27 C 0.149 3.851 28 C 0.116 3.884 29 C -0.114 4.114 30 N -0.251 5.251 31 N -0.234 5.234 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.145 0.855 38 H 0.441 0.559 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.255 0.745 46 H 0.075 0.925 47 H 0.042 0.958 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 0.779 6.972 7.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.083 4.083 4 C -0.091 4.091 5 C -0.107 4.107 6 C 0.338 3.662 7 O -0.441 6.441 8 N -0.344 5.344 9 C 0.054 3.946 10 H 0.081 0.919 11 C -0.162 4.162 12 C -0.140 4.140 13 H 0.094 0.906 14 C -0.164 4.164 15 C 0.041 3.959 16 H 0.084 0.916 17 C -0.180 4.180 18 N -0.322 5.322 19 C -0.393 4.393 20 H 0.098 0.902 21 C -0.188 4.188 22 N -0.538 5.538 23 Si 0.715 3.285 24 H -0.197 1.197 25 H -0.215 1.215 26 H -0.206 1.206 27 C 0.024 3.976 28 C -0.029 4.029 29 C -0.172 4.172 30 N -0.093 5.093 31 N -0.077 5.077 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.163 0.837 38 H 0.298 0.702 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.060 0.940 48 H 0.099 0.901 49 H 0.091 0.909 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.959 1.644 5.656 6.592 hybrid contribution 0.947 -1.649 0.502 1.967 sum -2.012 -0.005 6.158 6.478 Atomic orbital electron populations 1.21693 0.94208 1.01447 1.02661 1.20491 0.96531 0.89822 1.03767 1.22555 0.95212 0.98019 0.92532 1.22304 0.93950 0.94418 0.98380 1.20854 0.98142 0.94345 0.97331 1.17941 0.81279 0.85567 0.81410 1.90607 1.74970 1.18530 1.59969 1.47689 1.26781 1.22883 1.37002 1.20983 0.90462 0.94033 0.89151 0.91922 1.22066 0.97936 0.97845 0.98321 1.22832 0.96570 0.97583 0.97012 0.90615 1.22941 0.97281 0.96954 0.99256 1.21622 0.90752 0.95762 0.87720 0.91590 1.22782 0.99025 0.97255 0.98966 1.44937 1.56584 1.06804 1.23904 1.19088 1.30503 0.89875 0.99868 0.90172 1.24859 1.01060 0.96955 0.95962 1.69964 1.43249 1.24362 1.16203 0.86548 0.79653 0.83229 0.79068 1.19686 1.21507 1.20624 1.22060 0.99438 0.82462 0.93592 1.22786 0.92057 0.98162 0.89847 1.20951 1.01740 0.88969 1.05537 1.72882 1.10169 1.05689 1.20570 1.72590 1.18848 0.97575 1.18640 0.92352 0.92970 0.91590 0.89684 0.90142 0.83696 0.70221 0.92341 0.90820 0.92085 0.92110 0.91848 0.91699 0.93406 0.90748 0.94001 0.90056 0.90882 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.72 37.16 0.36 -1.46 16 2 C -0.07 -1.03 5.54 -27.89 -0.15 -1.18 16 3 C 0.06 1.14 6.26 -82.46 -0.52 0.62 16 4 C -0.06 -1.15 9.18 -38.78 -0.36 -1.51 16 5 C -0.09 -1.85 5.80 -104.57 -0.61 -2.46 16 6 C 0.55 11.11 5.47 -12.20 -0.07 11.05 16 7 O -0.56 -11.62 12.97 5.35 0.07 -11.55 16 8 N -0.68 -13.06 2.70 -53.90 -0.15 -13.21 16 9 C 0.16 2.71 2.77 -67.15 -0.19 2.52 16 10 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 11 C -0.12 -2.05 5.15 -26.21 -0.13 -2.18 16 12 C -0.12 -2.14 4.33 -87.92 -0.38 -2.52 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 14 C -0.13 -2.03 6.19 -24.30 -0.15 -2.18 16 15 C 0.15 2.61 4.24 -65.62 -0.28 2.34 16 16 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 17 C -0.14 -2.16 5.54 -25.50 -0.14 -2.31 16 18 N -0.60 -12.59 1.76 -161.37 -0.28 -12.88 16 19 C -0.27 -6.12 8.49 -15.06 -0.13 -6.25 16 20 H 0.08 1.81 7.84 -52.48 -0.41 1.40 16 21 C 0.01 0.28 5.41 -17.43 -0.09 0.19 16 22 N -0.89 -22.46 10.39 55.49 0.58 -21.89 16 23 Si 0.89 19.21 29.56 -169.99 -5.03 14.18 16 24 H -0.27 -5.36 5.48 56.52 0.31 -5.05 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.15 3.21 3.90 -2.83 -0.01 3.20 16 28 C 0.12 2.32 6.90 -81.99 -0.57 1.76 16 29 C -0.11 -1.98 9.65 36.01 0.35 -1.63 16 30 N -0.25 -5.16 11.42 33.81 0.39 -4.78 16 31 N -0.23 -4.69 11.11 33.58 0.37 -4.31 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 35 H 0.08 1.37 7.42 -51.93 -0.39 0.98 16 36 H 0.08 1.11 7.92 -51.93 -0.41 0.70 16 37 H 0.15 2.55 7.90 -52.49 -0.41 2.13 16 38 H 0.44 9.05 3.43 -40.82 -0.14 8.91 16 39 H 0.06 0.84 7.97 -51.93 -0.41 0.42 16 40 H 0.07 1.35 6.66 -51.93 -0.35 1.00 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.83 7.77 -51.93 -0.40 0.43 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 0.84 8.03 -51.93 -0.42 0.42 16 45 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 46 H 0.08 1.70 3.58 -58.28 -0.21 1.49 16 47 H 0.04 1.06 7.17 -51.93 -0.37 0.69 16 48 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.11 1.88 5.56 -51.93 -0.29 1.60 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -26.35 375.03 -9.12 -35.47 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -7.66 Total: 15.32 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -3.06 Total: -2.01 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.91 Total: -57.06 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.07 Total: -11.55 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -26.35 -9.12 -35.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047116155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.213 kcal (2) G-P(sol) polarization free energy of solvation -26.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds