Wall clock time and date at job start Wed Apr 1 2020 03:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.46825 * 2 1 4 4 C 1.38552 * 120.01575 * 125.94835 * 3 2 1 5 5 C 1.40077 * 117.81994 * 180.25800 * 4 3 2 6 6 C 1.48134 * 121.14858 * 179.73822 * 5 4 3 7 7 O 1.21513 * 120.00307 * 217.62108 * 6 5 4 8 8 N 1.34781 * 119.99833 * 37.62787 * 6 5 4 9 9 C 1.46494 * 120.00144 * 183.98483 * 8 6 5 10 10 H 1.09001 * 109.17581 * 50.06962 * 9 8 6 11 11 C 1.53024 * 109.32828 * 290.51837 * 9 8 6 12 12 C 1.53977 * 108.93254 * 295.20476 * 11 9 8 13 13 H 1.09001 * 112.99200 * 168.02107 * 12 11 9 14 14 C 1.55421 * 106.41629 * 293.75408 * 12 11 9 15 15 C 1.55174 * 100.35219 * 73.37609 * 14 12 11 16 16 H 1.09008 * 112.48456 * 162.66977 * 15 14 12 17 17 C 1.53878 * 107.26479 * 286.72747 * 15 14 12 18 18 N 1.47789 * 104.25309 * 40.55386 * 15 14 12 19 19 C 1.36937 * 125.85517 * 153.56846 * 18 15 14 20 20 H 1.08006 * 120.00334 * 7.00754 * 19 18 15 21 21 C 1.38810 * 120.00119 * 187.00500 * 19 18 15 22 22 N 1.31617 * 120.00050 * 354.22887 * 21 19 18 23 23 Si 1.86807 * 120.00148 * 174.21919 * 21 19 18 24 24 H 1.48498 * 109.46594 * 90.88978 * 23 21 19 25 25 H 1.48500 * 109.46796 * 210.88527 * 23 21 19 26 26 H 1.48494 * 109.47013 * 330.88687 * 23 21 19 27 27 C 1.47074 * 108.28787 * 333.53095 * 18 15 14 28 28 C 1.39773 * 117.70210 * 359.47678 * 5 4 3 29 29 C 1.50700 * 120.16672 * 180.24652 * 28 5 4 30 30 N 1.31896 * 119.65638 * 0.26671 * 28 5 4 31 31 N 1.28268 * 122.32895 * 0.02562 * 30 28 5 32 32 H 1.09005 * 109.47200 * 185.02589 * 1 2 3 33 33 H 1.08998 * 109.47812 * 305.02940 * 1 2 3 34 34 H 1.08998 * 109.47262 * 65.03145 * 1 2 3 35 35 H 1.08998 * 109.47133 * 239.99623 * 2 1 3 36 36 H 1.09006 * 109.46693 * 120.00050 * 2 1 3 37 37 H 1.07998 * 121.09294 * 0.02562 * 4 3 2 38 38 H 0.97001 * 119.99499 * 3.98724 * 8 6 5 39 39 H 1.08995 * 109.58294 * 175.34106 * 11 9 8 40 40 H 1.09002 * 109.58464 * 55.07388 * 11 9 8 41 41 H 1.08999 * 111.23600 * 191.15418 * 14 12 11 42 42 H 1.08999 * 111.23544 * 315.59937 * 14 12 11 43 43 H 1.08999 * 109.53743 * 185.71598 * 17 15 14 44 44 H 1.09002 * 109.52949 * 305.86414 * 17 15 14 45 45 H 0.96994 * 120.00503 * 184.81932 * 22 21 19 46 46 H 1.09004 * 109.97601 * 241.75034 * 27 18 15 47 47 H 1.09002 * 110.00964 * 120.48480 * 27 18 15 48 48 H 1.09002 * 109.46697 * 83.48759 * 29 28 5 49 49 H 1.08998 * 109.46924 * 203.47945 * 29 28 5 50 50 H 1.09000 * 109.47336 * 323.48484 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9273 1.8395 0.9712 5 6 3.3598 3.1712 0.9310 6 6 4.3114 3.6984 1.9365 7 8 4.1869 4.8324 2.3549 8 7 5.3154 2.9203 2.3870 9 6 6.2036 3.4097 3.4443 10 1 5.6019 3.7920 4.2689 11 6 7.0775 4.5371 2.8901 12 6 7.9999 3.9636 1.7987 13 1 8.5013 4.7363 1.2158 14 6 8.9718 2.9847 2.5148 15 6 8.0114 1.8009 2.8050 16 1 8.5446 0.8786 3.0361 17 6 7.0778 2.2395 3.9468 18 7 7.1927 1.6878 1.5798 19 6 6.5833 0.5491 1.1246 20 1 6.5854 -0.3442 1.7316 21 6 5.9627 0.5429 -0.1171 22 7 5.8603 1.6590 -0.8072 23 14 5.2731 -1.0495 -0.8087 24 1 3.8540 -1.1946 -0.3964 25 1 5.3577 -1.0229 -2.2911 26 1 6.0596 -2.1966 -0.2885 27 6 7.1440 3.0082 0.9338 28 6 2.8669 3.9839 -0.0938 29 6 3.2998 5.4240 -0.1929 30 7 2.0206 3.4839 -0.9733 31 7 1.6240 2.2649 -0.9275 32 1 -0.3634 -1.0238 0.0900 33 1 -0.3635 0.5898 0.8415 34 1 -0.3634 0.4338 -0.9316 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8901 37 1 3.2770 1.1624 1.7365 38 1 5.4500 2.0363 2.0112 39 1 7.6810 4.9599 3.6932 40 1 6.4438 5.3136 2.4617 41 1 9.7842 2.6813 1.8545 42 1 9.3570 3.4161 3.4387 43 1 6.4533 1.3992 4.2502 44 1 7.6732 2.5760 4.7955 45 1 5.3661 1.6696 -1.6417 46 1 6.1148 3.3647 0.8923 47 1 7.5573 2.9463 -0.0730 48 1 4.2534 5.4813 -0.7177 49 1 2.5486 5.9922 -0.7414 50 1 3.4105 5.8399 0.8085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047116155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:49 Heat of formation + Delta-G solvation = 75.111568 kcal Electronic energy + Delta-G solvation = -33720.082679 eV Core-core repulsion = 29749.523122 eV Total energy + Delta-G solvation = -3970.559557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.59804 -41.79582 -39.51109 -36.22296 -35.49921 -34.93836 -34.33518 -32.57778 -32.35514 -31.79426 -29.56787 -28.72006 -27.07323 -26.69503 -24.83441 -24.38317 -23.87736 -22.72007 -21.43978 -21.12004 -20.29140 -19.00037 -18.58752 -18.26452 -17.03506 -16.76414 -16.66740 -16.37993 -16.29460 -15.85645 -15.53830 -15.28438 -15.04224 -14.72974 -14.40914 -14.07480 -13.95236 -13.90703 -13.85821 -13.48627 -13.31758 -13.26404 -13.21545 -13.12628 -12.97217 -12.86833 -12.65030 -12.41150 -12.27696 -12.16992 -11.89229 -11.79255 -11.61620 -11.35998 -11.25980 -11.09792 -11.07897 -10.82337 -10.61873 -10.41674 -10.34380 -9.17568 -8.77248 -7.81190 -5.19825 -0.48449 -0.09418 1.42729 1.51242 1.55026 1.73189 2.33474 2.47205 2.65284 2.95535 3.34479 3.39081 3.49963 3.62834 3.69609 3.80901 3.94953 4.01143 4.07494 4.09677 4.20191 4.30937 4.34918 4.45783 4.47337 4.52454 4.56926 4.65638 4.66578 4.72002 4.81764 4.89186 4.91884 4.93614 4.98999 5.06480 5.09915 5.16327 5.17004 5.26015 5.32502 5.36608 5.37710 5.41132 5.52578 5.60161 5.79736 5.85165 5.91651 6.19693 6.87496 7.10316 7.46371 7.67839 7.78434 8.44755 9.19118 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.006211 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.376766 B = 4507.390996 C = 5820.263387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 C 0.061 3.939 4 C -0.064 4.064 5 C -0.107 4.107 6 C 0.551 3.449 7 O -0.572 6.572 8 N -0.678 5.678 9 C 0.149 3.851 10 H 0.072 0.928 11 C -0.115 4.115 12 C -0.119 4.119 13 H 0.079 0.921 14 C -0.114 4.114 15 C 0.139 3.861 16 H 0.072 0.928 17 C -0.128 4.128 18 N -0.606 5.606 19 C -0.257 4.257 20 H 0.087 0.913 21 C -0.024 4.024 22 N -0.910 5.910 23 Si 0.919 3.081 24 H -0.242 1.242 25 H -0.320 1.320 26 H -0.278 1.278 27 C 0.155 3.845 28 C 0.101 3.899 29 C -0.105 4.105 30 N -0.268 5.268 31 N -0.251 5.251 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.157 0.843 38 H 0.436 0.564 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.099 0.901 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.235 0.765 46 H 0.061 0.939 47 H -0.009 1.009 48 H 0.074 0.926 49 H 0.091 0.909 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.380 0.064 9.787 9.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 C -0.085 4.085 4 C -0.093 4.093 5 C -0.121 4.121 6 C 0.336 3.664 7 O -0.455 6.455 8 N -0.342 5.342 9 C 0.044 3.956 10 H 0.090 0.910 11 C -0.153 4.153 12 C -0.138 4.138 13 H 0.097 0.903 14 C -0.152 4.152 15 C 0.033 3.967 16 H 0.090 0.910 17 C -0.168 4.168 18 N -0.332 5.332 19 C -0.386 4.386 20 H 0.104 0.896 21 C -0.221 4.221 22 N -0.556 5.556 23 Si 0.748 3.252 24 H -0.167 1.167 25 H -0.248 1.248 26 H -0.204 1.204 27 C 0.030 3.970 28 C -0.044 4.044 29 C -0.163 4.163 30 N -0.110 5.110 31 N -0.093 5.093 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.175 0.825 38 H 0.291 0.709 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.117 0.883 43 H 0.082 0.918 44 H 0.122 0.878 45 H 0.045 0.955 46 H 0.078 0.922 47 H 0.009 0.991 48 H 0.093 0.907 49 H 0.110 0.890 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.440 0.920 8.525 8.915 hybrid contribution 0.866 -1.462 -0.366 1.738 sum -1.574 -0.542 8.159 8.327 Atomic orbital electron populations 1.21652 0.92156 1.03232 1.02237 1.20663 0.98361 0.87687 1.04219 1.23049 0.94561 0.99193 0.91662 1.22503 0.93818 0.94233 0.98752 1.21028 0.98412 0.95018 0.97596 1.17980 0.81546 0.85524 0.81398 1.90585 1.75444 1.18898 1.60524 1.47756 1.26753 1.22446 1.37239 1.21282 0.90624 0.94927 0.88739 0.91043 1.21997 0.97571 0.97082 0.98628 1.22784 0.96814 0.97285 0.96960 0.90312 1.22914 0.96180 0.95627 1.00460 1.21911 0.91157 0.96821 0.86838 0.90965 1.22690 0.98504 0.96576 0.98981 1.45070 1.56996 1.06067 1.25108 1.19311 1.29248 0.90540 0.99455 0.89558 1.25253 1.02198 0.98187 0.96506 1.70185 1.44263 1.25520 1.15616 0.86008 0.81121 0.81447 0.76588 1.16676 1.24810 1.20394 1.21851 0.99085 0.83897 0.92139 1.23110 0.92170 0.99167 0.89950 1.20903 1.01883 0.88101 1.05459 1.72820 1.10783 1.06281 1.21067 1.72532 1.19569 0.97719 1.19472 0.89531 0.92720 0.92614 0.90389 0.88306 0.82543 0.70909 0.88836 0.93009 0.92984 0.88259 0.91790 0.87778 0.95489 0.92176 0.99107 0.90741 0.88989 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.72 71.98 0.70 -2.50 16 2 C -0.07 -2.05 5.54 29.85 0.17 -1.89 16 3 C 0.06 2.23 6.26 42.62 0.27 2.49 16 4 C -0.06 -2.40 9.18 22.79 0.21 -2.19 16 5 C -0.11 -4.32 5.80 -19.83 -0.12 -4.44 16 6 C 0.55 22.14 5.47 86.87 0.48 22.61 16 7 O -0.57 -23.75 12.97 -3.76 -0.05 -23.80 16 8 N -0.68 -25.52 2.70 -442.72 -1.19 -26.71 16 9 C 0.15 4.66 2.77 45.50 0.13 4.78 16 10 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16 11 C -0.11 -3.50 5.15 30.93 0.16 -3.34 16 12 C -0.12 -4.04 4.33 -9.05 -0.04 -4.08 16 13 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 14 C -0.11 -3.28 6.19 32.17 0.20 -3.08 16 15 C 0.14 4.45 4.24 45.79 0.19 4.64 16 16 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 17 C -0.13 -3.42 5.54 31.39 0.17 -3.25 16 18 N -0.61 -25.05 1.76 -664.44 -1.17 -26.23 16 19 C -0.26 -11.68 8.49 84.03 0.71 -10.96 16 20 H 0.09 3.76 7.84 -2.91 -0.02 3.74 16 21 C -0.02 -1.15 5.41 84.86 0.46 -0.70 16 22 N -0.91 -47.39 10.39 21.65 0.22 -47.16 16 23 Si 0.92 39.34 29.56 68.60 2.03 41.37 16 24 H -0.24 -9.10 5.48 99.48 0.55 -8.55 16 25 H -0.32 -15.32 7.11 99.48 0.71 -14.61 16 26 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 27 C 0.16 6.76 3.90 86.85 0.34 7.10 16 28 C 0.10 4.15 6.90 42.92 0.30 4.45 16 29 C -0.11 -3.77 9.65 71.24 0.69 -3.08 16 30 N -0.27 -11.29 11.42 -46.93 -0.54 -11.82 16 31 N -0.25 -10.19 11.11 -47.69 -0.53 -10.72 16 32 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.43 8.09 -2.39 -0.02 1.41 16 35 H 0.08 2.40 7.42 -2.39 -0.02 2.39 16 36 H 0.10 2.49 7.92 -2.38 -0.02 2.47 16 37 H 0.16 5.37 7.90 -2.91 -0.02 5.35 16 38 H 0.44 17.55 3.43 -92.71 -0.32 17.23 16 39 H 0.09 2.23 7.97 -2.39 -0.02 2.21 16 40 H 0.05 1.83 6.66 -2.39 -0.02 1.81 16 41 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.10 2.15 7.77 -2.39 -0.02 2.13 16 43 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.10 2.04 8.03 -2.39 -0.02 2.02 16 45 H 0.24 13.00 8.32 -92.71 -0.77 12.23 16 46 H 0.06 2.81 3.58 -14.93 -0.05 2.76 16 47 H -0.01 -0.50 7.17 -2.39 -0.02 -0.52 16 48 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 49 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 50 H 0.10 3.72 5.56 -2.39 -0.01 3.71 16 Total: -1.00 -59.36 375.03 4.22 -55.14 By element: Atomic # 1 Polarization: 42.91 SS G_CDS: 0.44 Total: 43.35 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 5.01 Total: 6.58 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -3.21 Total: -122.64 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.05 Total: -23.80 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -59.36 4.22 -55.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047116155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.252 kcal (2) G-P(sol) polarization free energy of solvation -59.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds