Wall clock time and date at job start Wed Apr 1 2020 03:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.47052 * 2 1 4 4 C 1.38542 * 120.01618 * 125.00305 * 3 2 1 5 5 C 1.40070 * 117.82093 * 180.02562 * 4 3 2 6 6 C 1.48136 * 121.14904 * 179.97438 * 5 4 3 7 7 O 1.21513 * 119.99919 * 173.91717 * 6 5 4 8 8 N 1.34775 * 119.99914 * 353.92640 * 6 5 4 9 9 C 1.46500 * 119.99741 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.18037 * 35.44454 * 9 8 6 11 11 C 1.53032 * 109.32217 * 154.99862 * 9 8 6 12 12 C 1.53971 * 108.93359 * 175.74514 * 11 9 8 13 13 H 1.09001 * 112.99177 * 168.02629 * 12 11 9 14 14 C 1.55423 * 106.41421 * 293.75129 * 12 11 9 15 15 C 1.55172 * 100.35512 * 73.38102 * 14 12 11 16 16 H 1.08994 * 112.48533 * 162.67150 * 15 14 12 17 17 C 1.53265 * 109.50350 * 275.80497 * 9 8 6 18 18 N 1.47789 * 104.25050 * 40.54957 * 15 14 12 19 19 C 1.36939 * 125.85373 * 153.55465 * 18 15 14 20 20 H 1.08000 * 119.99999 * 359.95847 * 19 18 15 21 21 C 1.38813 * 119.99919 * 179.97438 * 19 18 15 22 22 N 1.31618 * 120.00190 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99849 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47335 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47611 * 120.00256 * 23 21 19 26 26 H 1.48502 * 109.47072 * 240.00056 * 23 21 19 27 27 C 1.47078 * 108.29058 * 333.53386 * 18 15 14 28 28 C 1.39772 * 117.70550 * 0.26731 * 5 4 3 29 29 C 1.50691 * 120.17362 * 179.70814 * 28 5 4 30 30 N 1.31892 * 119.65149 * 359.44971 * 28 5 4 31 31 N 1.28280 * 122.33366 * 0.57740 * 30 28 5 32 32 H 1.09000 * 109.46897 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47230 * 299.99539 * 1 2 3 34 34 H 1.08995 * 109.47510 * 59.99742 * 1 2 3 35 35 H 1.09002 * 109.47230 * 240.00460 * 2 1 3 36 36 H 1.08995 * 109.47510 * 120.00258 * 2 1 3 37 37 H 1.08001 * 121.08914 * 0.02562 * 4 3 2 38 38 H 0.97000 * 119.99939 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.58052 * 55.87959 * 11 9 8 40 40 H 1.09002 * 109.57997 * 295.61523 * 11 9 8 41 41 H 1.09005 * 111.23278 * 191.15774 * 14 12 11 42 42 H 1.09005 * 111.23845 * 315.59962 * 14 12 11 43 43 H 1.09001 * 109.49656 * 64.79796 * 17 9 8 44 44 H 1.08999 * 109.56676 * 304.65169 * 17 9 8 45 45 H 0.96998 * 120.00120 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.97978 * 241.75058 * 27 18 15 47 47 H 1.08998 * 110.00675 * 120.47966 * 27 18 15 48 48 H 1.08998 * 109.47110 * 83.65441 * 29 28 5 49 49 H 1.08997 * 109.47218 * 203.65794 * 29 28 5 50 50 H 1.09002 * 109.47320 * 323.65510 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9121 1.8449 0.9826 5 6 3.3492 3.1750 0.9390 6 6 4.2894 3.7062 1.9530 7 8 4.7413 4.8279 1.8339 8 7 4.6437 2.9454 3.0075 9 6 5.5740 3.4706 4.0100 10 1 5.3945 4.5377 4.1408 11 6 5.3431 2.7515 5.3410 12 6 6.3944 3.2327 6.3578 13 1 6.1705 2.9255 7.3794 14 6 7.7705 2.7322 5.8369 15 6 7.9851 3.6993 4.6425 16 1 9.0231 3.7286 4.3112 17 6 7.0147 3.2535 3.5345 18 7 7.5156 5.0076 5.1448 19 6 7.9383 6.2339 4.7058 20 1 8.6807 6.3012 3.9243 21 6 7.4128 7.3904 5.2655 22 7 6.5087 7.3083 6.2184 23 14 7.9889 9.0632 4.6662 24 1 9.0033 8.8835 3.5965 25 1 6.8312 9.8221 4.1286 26 1 8.5907 9.8139 5.7973 27 6 6.5162 4.7665 6.1966 28 6 2.8628 3.9854 -0.0907 29 6 3.2913 5.4269 -0.1867 30 7 2.0307 3.4805 -0.9808 31 7 1.6342 2.2613 -0.9352 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 3.2498 1.1720 1.7569 38 1 4.2828 2.0501 3.1027 39 1 5.4405 1.6754 5.1965 40 1 4.3442 2.9812 5.7119 41 1 8.5475 2.8577 6.5911 42 1 7.7129 1.6968 5.5011 43 1 7.1935 3.8424 2.6349 44 1 7.1718 2.1973 3.3159 45 1 6.1412 8.1164 6.6093 46 1 5.5553 5.1873 5.9007 47 1 6.8460 5.2144 7.1340 48 1 4.2480 5.4877 -0.7054 49 1 2.5416 5.9928 -0.7396 50 1 3.3943 5.8429 0.8156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047116156.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:54 Heat of formation + Delta-G solvation = 47.081381 kcal Electronic energy + Delta-G solvation = -31170.907529 eV Core-core repulsion = 27199.132491 eV Total energy + Delta-G solvation = -3971.775038 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.54659 -40.08141 -38.72619 -35.59555 -34.71564 -33.73307 -32.88638 -31.76056 -30.73583 -29.70376 -28.47688 -27.78020 -25.96063 -25.35301 -23.68954 -23.18334 -23.00755 -21.57533 -20.40296 -19.49933 -18.87300 -17.78709 -17.51191 -16.93122 -15.99503 -15.88276 -15.64866 -15.25663 -14.81645 -14.60339 -14.45970 -14.11037 -14.02736 -13.60093 -13.41302 -13.08310 -13.05656 -12.80501 -12.51412 -12.24714 -12.13464 -12.01781 -11.89055 -11.84012 -11.62019 -11.55133 -11.27663 -11.02776 -10.75121 -10.70819 -10.63287 -10.41357 -10.31753 -9.96279 -9.90289 -9.80725 -9.71072 -9.64969 -9.44005 -9.32246 -8.74431 -8.56871 -6.81248 -5.66882 -2.99383 0.16784 0.63247 2.77042 3.06032 3.44866 3.45247 3.51096 3.52728 3.67665 4.00739 4.17446 4.36035 4.53905 4.56384 4.74962 4.83021 4.89677 5.13629 5.16319 5.22138 5.25566 5.35096 5.44659 5.49982 5.51184 5.58616 5.67570 5.73982 5.76648 5.80626 5.82620 5.91276 5.96655 5.98451 6.00355 6.01770 6.05610 6.16139 6.33130 6.50004 6.55226 6.58755 6.75587 6.81000 6.91047 6.95816 7.56491 7.56793 7.60392 7.85199 8.25627 8.27946 8.48423 9.26006 9.86301 10.51573 11.45073 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003245 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.953759 B = 8625.318119 C =10102.877991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C 0.055 3.945 4 C -0.084 4.084 5 C -0.123 4.123 6 C 0.552 3.448 7 O -0.497 6.497 8 N -0.716 5.716 9 C 0.147 3.853 10 H 0.119 0.881 11 C -0.112 4.112 12 C -0.118 4.118 13 H 0.083 0.917 14 C -0.128 4.128 15 C 0.158 3.842 16 H 0.066 0.934 17 C -0.135 4.135 18 N -0.595 5.595 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.923 5.923 23 Si 0.909 3.091 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.293 1.293 27 C 0.179 3.821 28 C 0.119 3.881 29 C -0.107 4.107 30 N -0.243 5.243 31 N -0.224 5.224 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.152 0.848 38 H 0.389 0.611 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.250 0.750 46 H 0.046 0.954 47 H 0.045 0.955 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.354 -17.360 -6.891 20.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 C -0.089 4.089 4 C -0.114 4.114 5 C -0.137 4.137 6 C 0.336 3.664 7 O -0.371 6.371 8 N -0.367 5.367 9 C 0.044 3.956 10 H 0.136 0.864 11 C -0.150 4.150 12 C -0.138 4.138 13 H 0.101 0.899 14 C -0.167 4.167 15 C 0.049 3.951 16 H 0.084 0.916 17 C -0.176 4.176 18 N -0.319 5.319 19 C -0.349 4.349 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.571 5.571 23 Si 0.740 3.260 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.220 1.220 27 C 0.055 3.945 28 C -0.025 4.025 29 C -0.165 4.165 30 N -0.085 5.085 31 N -0.067 5.067 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.169 0.831 38 H 0.223 0.777 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.107 0.893 49 H 0.093 0.907 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.969 -15.993 -8.276 20.118 hybrid contribution 0.897 0.096 1.012 1.355 sum -8.072 -15.897 -7.265 19.252 Atomic orbital electron populations 1.21713 0.93652 1.02164 1.02952 1.20443 0.97371 0.88959 1.03760 1.22817 0.94944 0.98696 0.92473 1.22522 0.95009 0.95247 0.98575 1.21312 0.99555 0.94785 0.98066 1.17852 0.81329 0.85726 0.81539 1.90868 1.53246 1.17931 1.75065 1.46147 1.47761 1.17914 1.24879 1.21347 0.87743 1.01553 0.84938 0.86366 1.21969 0.99606 0.98550 0.94899 1.22836 0.93912 1.00132 0.96926 0.89892 1.22990 0.97230 0.97665 0.98783 1.21502 0.95349 0.86630 0.91635 0.91575 1.22652 0.95323 0.98813 1.00849 1.44624 1.46090 0.99757 1.41477 1.19051 1.18539 0.81689 1.15587 0.90544 1.24731 0.99140 0.97618 0.98746 1.69944 1.31726 1.26632 1.28763 0.86084 0.77811 0.84428 0.77694 1.20578 1.21786 1.21983 1.21316 0.93472 0.86961 0.92773 1.23188 0.91179 0.98900 0.89204 1.21005 1.01854 0.87650 1.06011 1.73076 1.09293 1.05297 1.20860 1.72735 1.17125 0.97618 1.19180 0.91856 0.92727 0.91353 0.89377 0.89861 0.83069 0.77710 0.92764 0.92094 0.91793 0.92241 0.92152 0.93794 0.93949 0.93577 0.93700 0.89257 0.90681 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.77 37.16 0.36 -0.62 16 2 C -0.07 -0.45 6.35 -27.88 -0.18 -0.62 16 3 C 0.06 0.57 6.25 -82.45 -0.52 0.06 16 4 C -0.08 -0.84 9.29 -38.78 -0.36 -1.20 16 5 C -0.12 -1.63 5.92 -104.57 -0.62 -2.25 16 6 C 0.55 8.63 7.69 -12.20 -0.09 8.53 16 7 O -0.50 -9.87 13.20 5.35 0.07 -9.80 16 8 N -0.72 -9.79 5.04 -54.51 -0.27 -10.07 16 9 C 0.15 2.49 2.08 -67.78 -0.14 2.35 16 10 H 0.12 2.68 5.40 -51.93 -0.28 2.40 16 11 C -0.11 -1.63 4.94 -26.21 -0.13 -1.76 16 12 C -0.12 -1.99 4.33 -87.93 -0.38 -2.37 16 13 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 14 C -0.13 -2.06 6.18 -24.29 -0.15 -2.21 16 15 C 0.16 3.04 4.30 -65.61 -0.28 2.76 16 16 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 17 C -0.14 -2.36 5.29 -26.13 -0.14 -2.50 16 18 N -0.60 -14.35 2.43 -161.38 -0.39 -14.74 16 19 C -0.22 -6.05 10.29 -15.06 -0.16 -6.20 16 20 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 22 N -0.92 -26.85 10.35 55.49 0.57 -26.28 16 23 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 C 0.18 4.10 4.10 -2.83 -0.01 4.09 16 28 C 0.12 1.71 6.91 -82.00 -0.57 1.14 16 29 C -0.11 -1.49 8.97 36.00 0.32 -1.17 16 30 N -0.24 -3.57 11.42 33.81 0.39 -3.18 16 31 N -0.22 -2.97 11.04 33.58 0.37 -2.60 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.55 7.96 -51.93 -0.41 0.14 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.37 7.92 -51.93 -0.41 -0.04 16 37 H 0.15 0.96 6.60 -52.49 -0.35 0.61 16 38 H 0.39 3.80 6.82 -40.82 -0.28 3.52 16 39 H 0.05 0.64 7.97 -51.93 -0.41 0.22 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.80 7.75 -51.93 -0.40 0.39 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.04 0.65 8.00 -51.93 -0.42 0.23 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 46 H 0.05 1.18 6.15 -51.93 -0.32 0.86 16 47 H 0.04 1.16 7.40 -51.93 -0.38 0.78 16 48 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.11 1.70 5.95 -51.93 -0.31 1.39 16 LS Contribution 387.98 15.07 5.85 5.85 Total: -1.00 -32.67 387.98 -9.32 -41.99 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.75 Total: 3.52 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -3.13 Total: -2.26 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.66 Total: -56.87 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.67 -9.32 -41.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047116156.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.075 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds