Wall clock time and date at job start Wed Apr 1 2020 03:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.47052 * 2 1 4 4 C 1.38542 * 120.01618 * 125.00305 * 3 2 1 5 5 C 1.40070 * 117.82093 * 180.02562 * 4 3 2 6 6 C 1.48136 * 121.14904 * 179.97438 * 5 4 3 7 7 O 1.21513 * 119.99919 * 173.91717 * 6 5 4 8 8 N 1.34775 * 119.99914 * 353.92640 * 6 5 4 9 9 C 1.46500 * 119.99741 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.18037 * 35.44454 * 9 8 6 11 11 C 1.53032 * 109.32217 * 154.99862 * 9 8 6 12 12 C 1.53971 * 108.93359 * 175.74514 * 11 9 8 13 13 H 1.09001 * 112.99177 * 168.02629 * 12 11 9 14 14 C 1.55423 * 106.41421 * 293.75129 * 12 11 9 15 15 C 1.55172 * 100.35512 * 73.38102 * 14 12 11 16 16 H 1.08994 * 112.48533 * 162.67150 * 15 14 12 17 17 C 1.53265 * 109.50350 * 275.80497 * 9 8 6 18 18 N 1.47789 * 104.25050 * 40.54957 * 15 14 12 19 19 C 1.36939 * 125.85373 * 153.55465 * 18 15 14 20 20 H 1.08000 * 119.99999 * 359.95847 * 19 18 15 21 21 C 1.38813 * 119.99919 * 179.97438 * 19 18 15 22 22 N 1.31618 * 120.00190 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99849 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47335 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47611 * 120.00256 * 23 21 19 26 26 H 1.48502 * 109.47072 * 240.00056 * 23 21 19 27 27 C 1.47078 * 108.29058 * 333.53386 * 18 15 14 28 28 C 1.39772 * 117.70550 * 0.26731 * 5 4 3 29 29 C 1.50691 * 120.17362 * 179.70814 * 28 5 4 30 30 N 1.31892 * 119.65149 * 359.44971 * 28 5 4 31 31 N 1.28280 * 122.33366 * 0.57740 * 30 28 5 32 32 H 1.09000 * 109.46897 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47230 * 299.99539 * 1 2 3 34 34 H 1.08995 * 109.47510 * 59.99742 * 1 2 3 35 35 H 1.09002 * 109.47230 * 240.00460 * 2 1 3 36 36 H 1.08995 * 109.47510 * 120.00258 * 2 1 3 37 37 H 1.08001 * 121.08914 * 0.02562 * 4 3 2 38 38 H 0.97000 * 119.99939 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.58052 * 55.87959 * 11 9 8 40 40 H 1.09002 * 109.57997 * 295.61523 * 11 9 8 41 41 H 1.09005 * 111.23278 * 191.15774 * 14 12 11 42 42 H 1.09005 * 111.23845 * 315.59962 * 14 12 11 43 43 H 1.09001 * 109.49656 * 64.79796 * 17 9 8 44 44 H 1.08999 * 109.56676 * 304.65169 * 17 9 8 45 45 H 0.96998 * 120.00120 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.97978 * 241.75058 * 27 18 15 47 47 H 1.08998 * 110.00675 * 120.47966 * 27 18 15 48 48 H 1.08998 * 109.47110 * 83.65441 * 29 28 5 49 49 H 1.08997 * 109.47218 * 203.65794 * 29 28 5 50 50 H 1.09002 * 109.47320 * 323.65510 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9121 1.8449 0.9826 5 6 3.3492 3.1750 0.9390 6 6 4.2894 3.7062 1.9530 7 8 4.7413 4.8279 1.8339 8 7 4.6437 2.9454 3.0075 9 6 5.5740 3.4706 4.0100 10 1 5.3945 4.5377 4.1408 11 6 5.3431 2.7515 5.3410 12 6 6.3944 3.2327 6.3578 13 1 6.1705 2.9255 7.3794 14 6 7.7705 2.7322 5.8369 15 6 7.9851 3.6993 4.6425 16 1 9.0231 3.7286 4.3112 17 6 7.0147 3.2535 3.5345 18 7 7.5156 5.0076 5.1448 19 6 7.9383 6.2339 4.7058 20 1 8.6807 6.3012 3.9243 21 6 7.4128 7.3904 5.2655 22 7 6.5087 7.3083 6.2184 23 14 7.9889 9.0632 4.6662 24 1 9.0033 8.8835 3.5965 25 1 6.8312 9.8221 4.1286 26 1 8.5907 9.8139 5.7973 27 6 6.5162 4.7665 6.1966 28 6 2.8628 3.9854 -0.0907 29 6 3.2913 5.4269 -0.1867 30 7 2.0307 3.4805 -0.9808 31 7 1.6342 2.2613 -0.9352 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 3.2498 1.1720 1.7569 38 1 4.2828 2.0501 3.1027 39 1 5.4405 1.6754 5.1965 40 1 4.3442 2.9812 5.7119 41 1 8.5475 2.8577 6.5911 42 1 7.7129 1.6968 5.5011 43 1 7.1935 3.8424 2.6349 44 1 7.1718 2.1973 3.3159 45 1 6.1412 8.1164 6.6093 46 1 5.5553 5.1873 5.9007 47 1 6.8460 5.2144 7.1340 48 1 4.2480 5.4877 -0.7054 49 1 2.5416 5.9928 -0.7396 50 1 3.3943 5.8429 0.8156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047116156.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:53 Heat of formation + Delta-G solvation = 25.316129 kcal Electronic energy + Delta-G solvation = -31171.851341 eV Core-core repulsion = 27199.132491 eV Total energy + Delta-G solvation = -3972.718850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.55011 -41.43476 -40.07300 -36.56146 -35.97067 -34.95035 -34.52464 -32.67038 -32.29743 -31.22274 -29.92759 -28.82083 -27.19911 -26.92128 -24.92465 -24.46891 -24.03236 -22.67508 -21.65790 -21.17749 -20.23101 -19.00728 -18.71340 -18.54463 -17.27596 -16.84432 -16.81160 -16.54089 -16.29324 -15.99194 -15.57225 -15.38905 -15.17539 -14.92861 -14.56739 -14.39220 -14.14149 -13.98131 -13.80130 -13.47621 -13.41315 -13.31455 -13.20022 -13.13040 -13.00672 -12.72678 -12.63588 -12.50022 -12.17602 -12.09614 -11.87084 -11.84353 -11.63297 -11.50647 -11.38404 -11.20807 -11.16463 -10.95209 -10.67496 -10.62419 -10.51067 -10.03730 -8.80882 -7.82053 -5.13068 -0.80750 -0.28313 1.39839 1.42611 1.50601 1.64150 1.88931 2.42835 2.49510 2.79726 3.10995 3.25202 3.36908 3.50309 3.65270 3.68344 3.84279 3.93829 3.97325 4.10340 4.13045 4.38976 4.39648 4.40221 4.43636 4.53353 4.54663 4.57909 4.61809 4.64962 4.69439 4.82265 4.86555 4.87791 5.04593 5.08405 5.12377 5.15674 5.20446 5.24256 5.31218 5.36036 5.38793 5.44910 5.51553 5.52709 5.63865 5.75952 5.87241 6.25173 6.44981 7.14254 7.16366 7.52455 7.85091 8.48289 9.27861 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003245 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.953759 B = 8625.318119 C =10102.877991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C 0.060 3.940 4 C -0.058 4.058 5 C -0.138 4.138 6 C 0.551 3.449 7 O -0.552 6.552 8 N -0.696 5.696 9 C 0.154 3.846 10 H 0.051 0.949 11 C -0.102 4.102 12 C -0.106 4.106 13 H 0.110 0.890 14 C -0.111 4.111 15 C 0.140 3.860 16 H 0.062 0.938 17 C -0.123 4.123 18 N -0.614 5.614 19 C -0.223 4.223 20 H 0.071 0.929 21 C -0.065 4.065 22 N -0.948 5.948 23 Si 0.963 3.037 24 H -0.270 1.270 25 H -0.300 1.300 26 H -0.290 1.290 27 C 0.187 3.813 28 C 0.103 3.897 29 C -0.101 4.101 30 N -0.267 5.267 31 N -0.246 5.246 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.200 0.800 38 H 0.415 0.585 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.110 0.890 43 H 0.020 0.980 44 H 0.090 0.910 45 H 0.242 0.758 46 H 0.005 0.995 47 H 0.000 1.000 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.628 -22.829 -6.629 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 C -0.085 4.085 4 C -0.087 4.087 5 C -0.152 4.152 6 C 0.336 3.664 7 O -0.430 6.430 8 N -0.348 5.348 9 C 0.050 3.950 10 H 0.069 0.931 11 C -0.139 4.139 12 C -0.126 4.126 13 H 0.128 0.872 14 C -0.149 4.149 15 C 0.033 3.967 16 H 0.080 0.920 17 C -0.164 4.164 18 N -0.338 5.338 19 C -0.353 4.353 20 H 0.089 0.911 21 C -0.258 4.258 22 N -0.598 5.598 23 Si 0.793 3.207 24 H -0.195 1.195 25 H -0.227 1.227 26 H -0.217 1.217 27 C 0.062 3.938 28 C -0.042 4.042 29 C -0.159 4.159 30 N -0.109 5.109 31 N -0.088 5.088 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.117 0.883 36 H 0.139 0.861 37 H 0.217 0.783 38 H 0.253 0.747 39 H 0.128 0.872 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.128 0.872 43 H 0.039 0.961 44 H 0.109 0.891 45 H 0.051 0.949 46 H 0.023 0.977 47 H 0.018 0.982 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.245 -21.540 -8.037 24.780 hybrid contribution 0.963 1.713 0.870 2.149 sum -8.282 -19.827 -7.167 22.651 Atomic orbital electron populations 1.21715 0.93849 1.03238 1.01709 1.20673 0.97081 0.86460 1.06123 1.23506 0.93912 0.99907 0.91171 1.23010 0.92998 0.93912 0.98786 1.21087 1.00121 0.96420 0.97544 1.18224 0.81027 0.85096 0.82014 1.90861 1.55316 1.20463 1.76335 1.45801 1.46797 1.18766 1.23403 1.20961 0.88093 0.98649 0.87272 0.93069 1.21920 0.98953 1.01104 0.91955 1.22787 0.95691 0.94723 0.99381 0.87234 1.22950 0.96218 0.99043 0.96655 1.21870 0.95510 0.85360 0.93945 0.92013 1.22472 0.95008 1.00663 0.98222 1.44849 1.46441 1.00611 1.41931 1.19315 1.17560 0.83695 1.14694 0.91127 1.25431 1.00068 1.00635 0.99689 1.70157 1.33074 1.26491 1.30057 0.85220 0.77156 0.80911 0.77421 1.19482 1.22734 1.21662 1.21068 0.90959 0.91671 0.90092 1.23156 0.91944 0.98932 0.90142 1.20839 1.01975 0.88547 1.04521 1.73044 1.09938 1.06438 1.21462 1.72664 1.17849 0.97518 1.20776 0.89626 0.93226 0.93430 0.88289 0.86112 0.78259 0.74660 0.87215 0.91564 0.92148 0.87212 0.96070 0.89115 0.94880 0.97665 0.98195 0.89833 0.89661 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.77 71.98 0.70 -0.78 16 2 C -0.06 -0.56 6.35 29.85 0.19 -0.37 16 3 C 0.06 1.05 6.25 42.63 0.27 1.32 16 4 C -0.06 -0.92 9.29 22.79 0.21 -0.71 16 5 C -0.14 -3.50 5.92 -19.83 -0.12 -3.62 16 6 C 0.55 17.17 7.69 86.87 0.67 17.84 16 7 O -0.55 -23.46 13.20 -3.76 -0.05 -23.51 16 8 N -0.70 -17.19 5.04 -444.67 -2.24 -19.43 16 9 C 0.15 5.01 2.08 45.09 0.09 5.10 16 10 H 0.05 2.43 5.40 -2.39 -0.01 2.42 16 11 C -0.10 -2.51 4.94 30.93 0.15 -2.36 16 12 C -0.11 -3.27 4.33 -9.05 -0.04 -3.31 16 13 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 14 C -0.11 -3.10 6.18 32.17 0.20 -2.90 16 15 C 0.14 5.25 4.30 45.79 0.20 5.44 16 16 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 17 C -0.12 -4.06 5.29 30.98 0.16 -3.90 16 18 N -0.61 -30.69 2.43 -664.47 -1.62 -32.31 16 19 C -0.22 -12.88 10.29 84.03 0.87 -12.01 16 20 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 21 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 22 N -0.95 -58.80 10.35 21.65 0.22 -58.57 16 23 Si 0.96 48.84 29.55 68.60 2.03 50.87 16 24 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.30 -15.50 7.11 99.48 0.71 -14.79 16 26 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 27 C 0.19 8.86 4.10 86.85 0.36 9.21 16 28 C 0.10 3.03 6.91 42.92 0.30 3.32 16 29 C -0.10 -3.05 8.97 71.23 0.64 -2.41 16 30 N -0.27 -7.90 11.42 -46.94 -0.54 -8.44 16 31 N -0.25 -6.24 11.04 -47.68 -0.53 -6.76 16 32 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 0.68 7.96 -2.39 -0.02 0.66 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.12 0.21 7.92 -2.39 -0.02 0.19 16 37 H 0.20 1.11 6.60 -2.91 -0.02 1.09 16 38 H 0.41 5.75 6.82 -92.71 -0.63 5.12 16 39 H 0.11 1.63 7.97 -2.39 -0.02 1.62 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.11 2.09 7.75 -2.38 -0.02 2.07 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.09 2.17 8.00 -2.39 -0.02 2.15 16 45 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 46 H 0.01 0.29 6.15 -2.39 -0.01 0.27 16 47 H 0.00 -0.01 7.40 -2.39 -0.02 -0.03 16 48 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 49 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 50 H 0.08 2.94 5.95 -2.39 -0.01 2.93 16 Total: -1.00 -83.19 387.98 2.92 -80.27 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.33 Total: 11.44 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 5.31 Total: 6.44 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -4.70 Total: -125.51 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.87 kcal Total: -83.19 2.92 -80.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047116156.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.586 kcal (2) G-P(sol) polarization free energy of solvation -83.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds