Wall clock time and date at job start Wed Apr 1 2020 03:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47274 * 2 1 4 4 C 1.50699 * 109.47393 * 239.99746 * 2 1 3 5 5 N 1.32168 * 120.53452 * 31.17641 * 4 2 1 6 6 C 1.31851 * 120.96826 * 179.97438 * 5 4 2 7 7 N 1.31886 * 122.09743 * 359.97438 * 6 5 4 8 8 C 1.32134 * 120.96389 * 0.02562 * 7 6 5 9 9 C 1.39926 * 120.54414 * 210.90075 * 4 2 1 10 10 C 1.47842 * 120.93565 * 359.97438 * 9 4 2 11 11 O 1.21554 * 119.99662 * 353.84118 * 10 9 4 12 12 N 1.34770 * 119.99703 * 173.83607 * 10 9 4 13 13 C 1.46503 * 119.99870 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.32256 * 35.00067 * 13 12 10 15 15 C 1.53028 * 109.32748 * 154.64638 * 13 12 10 16 16 C 1.53939 * 108.84933 * 175.85124 * 15 13 12 17 17 H 1.08997 * 113.70901 * 168.39984 * 16 15 13 18 18 C 1.55432 * 106.26262 * 293.57863 * 16 15 13 19 19 C 1.55172 * 100.35296 * 73.43324 * 18 16 15 20 20 H 1.09000 * 112.48123 * 163.35012 * 19 18 16 21 21 C 1.52989 * 109.32535 * 275.36078 * 13 12 10 22 22 N 1.47787 * 104.87814 * 40.82775 * 19 18 16 23 23 C 1.36930 * 125.85983 * 153.22108 * 22 19 18 24 24 H 1.08001 * 119.99843 * 5.35388 * 23 22 19 25 25 C 1.38814 * 120.00177 * 185.35588 * 23 22 19 26 26 N 1.31622 * 120.00285 * 348.03469 * 25 23 22 27 27 Si 1.86807 * 119.99906 * 168.03746 * 25 23 22 28 28 H 1.48505 * 109.47038 * 94.94651 * 27 25 23 29 29 H 1.48495 * 109.47116 * 214.94758 * 27 25 23 30 30 H 1.48498 * 109.47319 * 334.94864 * 27 25 23 31 31 C 1.48747 * 107.40328 * 333.52154 * 22 19 18 32 32 H 1.09001 * 109.47088 * 59.99994 * 1 2 3 33 33 H 1.08998 * 109.47275 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46746 * 300.00219 * 1 2 3 35 35 H 1.09001 * 109.47088 * 120.00005 * 2 1 3 36 36 H 1.08996 * 109.47052 * 60.00220 * 3 2 1 37 37 H 1.08997 * 109.47275 * 180.02562 * 3 2 1 38 38 H 1.09000 * 109.46595 * 299.99784 * 3 2 1 39 39 H 1.08000 * 118.95558 * 179.97438 * 6 5 4 40 40 H 1.07999 * 120.54121 * 180.02562 * 8 7 6 41 41 H 0.96994 * 120.00678 * 0.02562 * 12 10 9 42 42 H 1.08999 * 109.57414 * 295.48599 * 15 13 12 43 43 H 1.08998 * 109.57663 * 55.87815 * 15 13 12 44 44 H 1.09000 * 111.23221 * 315.65945 * 18 16 15 45 45 H 1.08997 * 111.27711 * 191.22917 * 18 16 15 46 46 H 1.09000 * 109.53372 * 304.52526 * 21 13 12 47 47 H 1.08998 * 109.53238 * 64.75495 * 21 13 12 48 48 H 0.96991 * 120.00089 * 180.02562 * 26 25 23 49 49 H 1.09002 * 109.84496 * 241.62281 * 31 22 19 50 50 H 1.09000 * 109.93855 * 120.49333 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.3380 -0.6790 -2.3545 6 6 1.7697 -1.2971 -3.4362 7 7 2.9036 -1.9705 -3.4530 8 6 3.6608 -2.0539 -2.3734 9 6 3.2443 -1.4093 -1.2030 10 6 4.0601 -1.4679 0.0286 11 8 3.7394 -0.8139 1.0017 12 7 5.1593 -2.2465 0.0722 13 6 5.9674 -2.3051 1.2928 14 1 5.3142 -2.2276 2.1620 15 6 6.7174 -3.6382 1.3402 16 6 7.6417 -3.6454 2.5712 17 1 8.0630 -4.6249 2.7972 18 6 8.7227 -2.5595 2.3102 19 6 7.8825 -1.2725 2.5237 20 1 8.5035 -0.3892 2.6723 21 6 6.9594 -1.1404 1.2996 22 7 7.0294 -1.5662 3.6943 23 6 6.5173 -0.6422 4.5655 24 1 6.6557 0.4122 4.3773 25 6 5.8203 -1.0609 5.6907 26 7 5.4466 -2.3179 5.8035 27 14 5.4127 0.1598 7.0447 28 1 4.0448 0.6970 6.8315 29 1 5.4769 -0.5225 8.3620 30 1 6.3924 1.2754 7.0169 31 6 6.8416 -3.0407 3.7492 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 -0.0005 38 1 1.6767 1.9563 -0.8900 39 1 1.1760 -1.2505 -4.3372 40 1 4.5883 -2.6069 -2.3950 41 1 5.4154 -2.7682 -0.7044 42 1 6.0022 -4.4570 1.4190 43 1 7.3114 -3.7555 0.4339 44 1 9.1029 -2.6181 1.2903 45 1 9.5337 -2.6264 3.0353 46 1 7.5567 -1.1651 0.3883 47 1 6.4145 -0.1980 1.3542 48 1 4.9593 -2.6103 6.5895 49 1 5.7840 -3.2831 3.6445 50 1 7.2204 -3.4287 4.6947 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047201905.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:57 Heat of formation + Delta-G solvation = 22.653241 kcal Electronic energy + Delta-G solvation = -31691.960184 eV Core-core repulsion = 27719.125863 eV Total energy + Delta-G solvation = -3972.834321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.51079 -41.34020 -39.90292 -37.26244 -35.95435 -34.75629 -34.14184 -32.90497 -32.31497 -31.09812 -29.76191 -28.14590 -27.17655 -26.26314 -25.86564 -24.92056 -23.22384 -22.12015 -21.61239 -21.21586 -20.21835 -18.95716 -18.90253 -18.52008 -17.83458 -17.13956 -16.66696 -16.42716 -16.20035 -15.73137 -15.59382 -15.30981 -15.27451 -15.00666 -14.69541 -14.41878 -14.14719 -13.98814 -13.77292 -13.48232 -13.35826 -13.22135 -13.10741 -12.96356 -12.78495 -12.59636 -12.52395 -12.50948 -12.30575 -12.20505 -12.02077 -11.87184 -11.64649 -11.60187 -11.31615 -11.14939 -10.95749 -10.75812 -10.62710 -10.55967 -10.36142 -9.95296 -8.80116 -7.84519 -5.11055 -0.63559 -0.10881 1.41783 1.42998 1.51651 1.79788 2.03465 2.50980 2.69395 2.88112 3.04506 3.22526 3.35353 3.57495 3.66069 3.72223 3.83906 3.93705 4.08001 4.11071 4.16090 4.18828 4.39699 4.41391 4.45438 4.54877 4.58924 4.65737 4.69254 4.74140 4.82661 4.86255 4.87051 4.90788 5.07606 5.12834 5.16876 5.21856 5.24759 5.31373 5.36462 5.36911 5.45534 5.52235 5.54012 5.65822 5.74868 5.79487 5.83411 6.23286 6.53190 6.91132 7.13323 7.24823 7.82771 8.50940 9.28269 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011430 B = 0.003863 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.058540 B = 7247.389070 C = 9021.792101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.070 4.070 3 C -0.119 4.119 4 C 0.232 3.768 5 N -0.529 5.529 6 C 0.315 3.685 7 N -0.532 5.532 8 C 0.197 3.803 9 C -0.253 4.253 10 C 0.555 3.445 11 O -0.552 6.552 12 N -0.702 5.702 13 C 0.156 3.844 14 H 0.052 0.948 15 C -0.102 4.102 16 C -0.105 4.105 17 H 0.111 0.889 18 C -0.111 4.111 19 C 0.140 3.860 20 H 0.059 0.941 21 C -0.124 4.124 22 N -0.615 5.615 23 C -0.226 4.226 24 H 0.070 0.930 25 C -0.062 4.062 26 N -0.945 5.945 27 Si 0.960 3.040 28 H -0.295 1.295 29 H -0.292 1.292 30 H -0.270 1.270 31 C 0.184 3.816 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.237 0.763 40 H 0.206 0.794 41 H 0.412 0.588 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.020 0.980 48 H 0.243 0.757 49 H 0.008 0.992 50 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 -2.528 -21.719 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.177 4.177 4 C 0.086 3.914 5 N -0.242 5.242 6 C 0.029 3.971 7 N -0.245 5.245 8 C 0.030 3.970 9 C -0.261 4.261 10 C 0.341 3.659 11 O -0.431 6.431 12 N -0.354 5.354 13 C 0.052 3.948 14 H 0.070 0.930 15 C -0.140 4.140 16 C -0.124 4.124 17 H 0.129 0.871 18 C -0.149 4.149 19 C 0.033 3.967 20 H 0.077 0.923 21 C -0.164 4.164 22 N -0.340 5.340 23 C -0.355 4.355 24 H 0.088 0.912 25 C -0.255 4.255 26 N -0.595 5.595 27 Si 0.789 3.211 28 H -0.223 1.223 29 H -0.218 1.218 30 H -0.195 1.195 31 C 0.060 3.940 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.253 0.747 40 H 0.222 0.778 41 H 0.250 0.750 42 H 0.084 0.916 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.079 0.921 46 H 0.106 0.894 47 H 0.039 0.961 48 H 0.052 0.948 49 H 0.026 0.974 50 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -1.944 -2.012 -21.671 21.851 hybrid contribution -0.134 0.547 2.003 2.081 sum -2.078 -1.465 -19.668 19.832 Atomic orbital electron populations 1.21674 0.92384 1.01756 1.02805 1.20577 0.97543 0.96989 0.93748 1.21523 1.00130 0.93643 1.02366 1.21971 0.87871 0.87588 0.93959 1.68403 1.34636 1.21556 0.99639 1.25999 0.89585 0.84953 0.96573 1.68570 1.07145 1.19589 1.29243 1.23933 0.98071 0.89567 0.85443 1.21598 0.99811 1.07307 0.97389 1.18165 0.81064 0.79891 0.86761 1.90815 1.69912 1.44466 1.37934 1.45826 1.25832 1.46477 1.17216 1.20866 0.92087 0.96008 0.85846 0.92988 1.21907 0.98336 0.94540 0.99175 1.22749 0.95902 0.99308 0.94458 0.87111 1.22958 0.96107 0.93333 1.02540 1.21839 0.91244 0.97371 0.86289 0.92264 1.22449 0.97748 0.96743 0.99509 1.45198 1.57060 1.02506 1.29215 1.19231 1.27729 0.88368 1.00175 0.91175 1.25423 1.01526 0.97850 1.00695 1.70157 1.43977 1.16346 1.28993 0.85329 0.77548 0.78650 0.79539 1.22320 1.21789 1.19459 1.21350 0.95741 0.82808 0.94106 0.90790 0.93428 0.91776 0.88688 0.91465 0.94413 0.91695 0.74736 0.77786 0.74974 0.91577 0.87380 0.87326 0.92089 0.89407 0.96118 0.94791 0.97391 0.98331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.78 71.98 0.63 -2.52 16 2 C -0.07 -2.04 2.41 -11.54 -0.03 -2.07 16 3 C -0.12 -3.36 8.93 71.98 0.64 -2.72 16 4 C 0.23 6.25 5.79 42.92 0.25 6.50 16 5 N -0.53 -12.05 9.40 -187.06 -1.76 -13.81 16 6 C 0.31 5.51 12.27 180.84 2.22 7.73 16 7 N -0.53 -9.69 10.42 -198.98 -2.07 -11.76 16 8 C 0.20 3.57 10.80 85.07 0.92 4.49 16 9 C -0.25 -6.44 5.91 -19.91 -0.12 -6.56 16 10 C 0.56 17.64 7.68 86.79 0.67 18.30 16 11 O -0.55 -23.49 12.34 -3.89 -0.05 -23.54 16 12 N -0.70 -18.25 5.02 -445.38 -2.24 -20.48 16 13 C 0.16 5.23 2.08 45.00 0.09 5.32 16 14 H 0.05 2.51 5.37 -2.38 -0.01 2.50 16 15 C -0.10 -2.63 4.95 30.92 0.15 -2.48 16 16 C -0.10 -3.30 4.34 -9.06 -0.04 -3.34 16 17 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 18 C -0.11 -3.22 6.18 32.18 0.20 -3.02 16 19 C 0.14 5.37 4.25 45.79 0.19 5.56 16 20 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 21 C -0.12 -4.23 5.27 30.89 0.16 -4.07 16 22 N -0.62 -31.21 2.49 -660.20 -1.64 -32.85 16 23 C -0.23 -13.15 10.28 84.04 0.86 -12.28 16 24 H 0.07 4.05 7.86 -2.91 -0.02 4.02 16 25 C -0.06 -3.69 5.46 84.86 0.46 -3.22 16 26 N -0.95 -58.99 10.63 21.65 0.23 -58.76 16 27 Si 0.96 48.47 29.57 68.60 2.03 50.50 16 28 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 29 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 30 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 31 C 0.18 8.81 4.18 86.53 0.36 9.17 16 32 H 0.07 1.65 7.79 -2.39 -0.02 1.63 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 3.50 5.43 -2.39 -0.01 3.48 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 37 H 0.04 1.21 7.61 -2.39 -0.02 1.19 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.24 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.21 2.00 6.58 -2.91 -0.02 1.98 16 41 H 0.41 6.55 6.77 -92.71 -0.63 5.92 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.11 1.78 7.97 -2.39 -0.02 1.76 16 44 H 0.11 2.19 7.74 -2.39 -0.02 2.18 16 45 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.09 2.24 8.00 -2.39 -0.02 2.22 16 47 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.24 14.86 8.31 -92.71 -0.77 14.08 16 49 H 0.01 0.44 6.22 -2.39 -0.01 0.42 16 50 H 0.00 -0.09 7.53 -2.39 -0.02 -0.11 16 Total: -1.00 -79.93 385.26 2.46 -77.47 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.33 Total: 18.45 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 7.63 Total: 14.78 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -7.48 Total: -137.66 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.05 Total: -23.54 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Total: -79.93 2.46 -77.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047201905.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.122 kcal (2) G-P(sol) polarization free energy of solvation -79.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds