Wall clock time and date at job start Wed Apr 1 2020 02:58:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30782 * 125.72522 * 2 1
4 4 C 1.34431 * 109.31921 * 179.97438 * 3 2 1
5 5 C 1.33860 * 107.79833 * 359.97438 * 4 3 2
6 6 N 1.34403 * 125.72100 * 179.97438 * 2 1 3
7 7 C 1.46472 * 128.44568 * 0.20855 * 6 2 1
8 8 C 1.53282 * 108.69902 * 162.68895 * 7 6 2
9 9 H 1.09005 * 109.43143 * 290.69129 * 8 7 6
10 10 C 1.50697 * 109.43377 * 170.83231 * 8 7 6
11 11 O 1.21275 * 120.00028 * 265.26478 * 10 8 7
12 12 N 1.34774 * 119.99902 * 85.27207 * 10 8 7
13 13 C 1.46657 * 125.33448 * 185.15827 * 12 10 8
14 14 C 1.53671 * 107.97355 * 180.70891 * 13 12 10
15 15 H 1.09001 * 112.77631 * 140.60719 * 14 13 12
16 16 C 1.53984 * 109.29716 * 266.92829 * 14 13 12
17 17 N 1.46761 * 106.67426 * 138.83170 * 16 14 13
18 18 C 1.36949 * 125.33167 * 161.58463 * 17 16 14
19 19 H 1.08002 * 119.99851 * 0.02562 * 18 17 16
20 20 C 1.38810 * 119.99536 * 179.97438 * 18 17 16
21 21 N 1.31610 * 120.00531 * 0.02562 * 20 18 17
22 22 Si 1.86806 * 119.99537 * 180.02562 * 20 18 17
23 23 H 1.48497 * 109.46842 * 60.00251 * 22 20 18
24 24 H 1.48494 * 109.46909 * 180.02562 * 22 20 18
25 25 H 1.48506 * 109.46982 * 300.00318 * 22 20 18
26 26 C 1.46657 * 109.33341 * 341.55320 * 17 16 14
27 27 C 1.53670 * 107.97050 * 0.70871 * 26 17 16
28 28 H 1.08999 * 112.77501 * 139.88587 * 27 26 17
29 29 C 1.46756 * 125.33753 * 4.84941 * 12 10 8
30 30 C 1.53117 * 109.70418 * 50.75891 * 8 7 6
31 31 C 1.50709 * 128.68064 * 180.33128 * 5 4 3
32 32 H 1.08997 * 109.47271 * 90.01811 * 1 2 3
33 33 H 1.08991 * 109.47250 * 210.02433 * 1 2 3
34 34 H 1.09006 * 109.46630 * 330.02097 * 1 2 3
35 35 H 1.08004 * 126.09638 * 179.97438 * 4 3 2
36 36 H 1.08995 * 109.60449 * 282.45426 * 7 6 2
37 37 H 1.09005 * 109.59530 * 42.92749 * 7 6 2
38 38 H 1.09008 * 109.76936 * 300.33536 * 13 12 10
39 39 H 1.09005 * 109.76862 * 61.06248 * 13 12 10
40 40 H 1.09000 * 110.02034 * 258.13761 * 16 14 13
41 41 H 1.09001 * 110.01428 * 19.53307 * 16 14 13
42 42 H 0.96999 * 120.00261 * 179.97438 * 21 20 18
43 43 H 1.09002 * 109.76281 * 120.33890 * 26 17 16
44 44 H 1.09003 * 109.76510 * 241.06257 * 26 17 16
45 45 H 1.09005 * 110.02014 * 280.85893 * 29 12 10
46 46 H 1.08994 * 110.01711 * 42.24550 * 29 12 10
47 47 H 1.09009 * 109.49481 * 50.02633 * 30 8 7
48 48 H 1.08995 * 109.50372 * 170.13026 * 30 8 7
49 49 H 1.08997 * 109.75179 * 283.85914 * 31 5 4
50 50 H 1.09005 * 109.74075 * 44.57577 * 31 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2706 1.0617 0.0000
4 6 3.5602 0.6820 0.0006
5 6 3.5927 -0.6562 0.0015
6 7 2.2917 -1.0912 0.0005
7 6 1.8921 -2.5003 -0.0031
8 6 3.0928 -3.3506 -0.4330
9 1 3.3052 -3.1714 -1.4870
10 6 2.7737 -4.8090 -0.2277
11 8 3.1089 -5.3647 0.7968
12 7 2.1159 -5.4958 -1.1827
13 6 1.6525 -6.8821 -1.0635
14 6 0.9713 -7.2696 -2.3854
15 1 1.1969 -8.2908 -2.6928
16 6 -0.5407 -6.9994 -2.2771
17 7 -0.9568 -6.4145 -3.5572
18 6 -2.2446 -6.3541 -4.0190
19 1 -3.0510 -6.7576 -3.4245
20 6 -2.5136 -5.7733 -5.2508
21 7 -1.5310 -5.2812 -5.9750
22 14 -4.2704 -5.6903 -5.8804
23 1 -5.1014 -4.9116 -4.9275
24 1 -4.2890 -5.0284 -7.2096
25 1 -4.8171 -7.0654 -6.0050
26 6 0.2226 -5.9041 -4.2639
27 6 1.4575 -6.1941 -3.3965
28 1 2.3178 -6.5182 -3.9820
29 6 1.7454 -4.9715 -2.5024
30 6 4.3181 -2.9744 0.4047
31 6 4.7918 -1.5692 0.0092
32 1 -0.3633 -0.0003 -1.0276
33 1 -0.3633 -0.8897 0.5142
34 1 -0.3633 0.8902 0.5135
35 1 4.4171 1.3395 0.0003
36 1 1.5763 -2.7934 0.9981
37 1 1.0710 -2.6457 -0.7051
38 1 2.5018 -7.5402 -0.8797
39 1 0.9391 -6.9632 -0.2433
40 1 -1.0751 -7.9332 -2.1022
41 1 -0.7373 -6.2989 -1.4654
42 1 -1.7190 -4.8757 -6.8359
43 1 0.3217 -6.4066 -5.2261
44 1 0.1238 -4.8295 -4.4177
45 1 0.8549 -4.3482 -2.4198
46 1 2.5695 -4.3921 -2.9185
47 1 4.0529 -2.9842 1.4620
48 1 5.1176 -3.6926 0.2229
49 1 5.2397 -1.5974 -0.9841
50 1 5.5231 -1.2104 0.7335
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049012422.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:58:56
Heat of formation + Delta-G solvation = 51.534360 kcal
Electronic energy + Delta-G solvation = -31270.618695 eV
Core-core repulsion = 27299.036753 eV
Total energy + Delta-G solvation = -3971.581942 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.53682 -40.52977 -38.70821 -36.37538 -35.15856 -33.55758 -32.45925 -31.40176
-30.49261 -30.17196 -29.50351 -26.59934 -25.82842 -25.67921 -24.71338 -23.22353
-22.12942 -20.99450 -20.34062 -19.54352 -19.39777 -18.88838 -17.46944 -16.91720
-16.80587 -16.13124 -15.88087 -15.27303 -15.02349 -14.79210 -14.42896 -14.32893
-14.06267 -13.86504 -13.73797 -13.33965 -13.20593 -13.14612 -12.98630 -12.80016
-12.48554 -12.29039 -12.08505 -12.03005 -11.89847 -11.84371 -11.51253 -11.38959
-11.21938 -10.99060 -10.86653 -10.49074 -10.26449 -10.16693 -10.06308 -10.02423
-9.82115 -9.77217 -9.63609 -8.71070 -8.61895 -8.28037 -6.95659 -5.83319
-3.17165 1.91384 2.27834 2.65620 2.94354 3.04503 3.33754 3.38877
3.39648 4.12506 4.16391 4.24864 4.39057 4.40069 4.54169 4.66165
4.72363 4.86428 4.89983 4.94962 5.04291 5.11852 5.16331 5.27649
5.31692 5.35874 5.40623 5.42901 5.48209 5.51377 5.58683 5.62720
5.71393 5.73887 5.77570 5.82321 5.86703 5.96063 6.07045 6.22811
6.26171 6.28214 6.45949 6.54155 6.66066 6.71063 7.08148 7.37377
7.41818 7.49453 7.68327 8.00835 8.01958 8.14540 9.11190 9.71323
10.34291 11.28240
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.011138 B = 0.003330 C = 0.002764
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2513.322732 B = 8406.843928 C =10127.637969
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 C 0.213 3.787
3 N -0.495 5.495
4 C -0.022 4.022
5 C -0.029 4.029
6 N -0.449 5.449
7 C 0.118 3.882
8 C -0.115 4.115
9 H 0.103 0.897
10 C 0.535 3.465
11 O -0.540 6.540
12 N -0.606 5.606
13 C 0.118 3.882
14 C -0.109 4.109
15 H 0.098 0.902
16 C 0.143 3.857
17 N -0.602 5.602
18 C -0.232 4.232
19 H 0.078 0.922
20 C -0.005 4.005
21 N -0.923 5.923
22 Si 0.912 3.088
23 H -0.285 1.285
24 H -0.289 1.289
25 H -0.285 1.285
26 C 0.187 3.813
27 C -0.121 4.121
28 H 0.090 0.910
29 C 0.107 3.893
30 C -0.104 4.104
31 C -0.044 4.044
32 H 0.084 0.916
33 H 0.073 0.927
34 H 0.090 0.910
35 H 0.169 0.831
36 H 0.091 0.909
37 H 0.100 0.900
38 H 0.064 0.936
39 H 0.069 0.931
40 H 0.037 0.963
41 H 0.017 0.983
42 H 0.254 0.746
43 H 0.050 0.950
44 H 0.049 0.951
45 H 0.077 0.923
46 H 0.068 0.932
47 H 0.078 0.922
48 H 0.082 0.918
49 H 0.083 0.917
50 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.587 4.713 10.415 16.278
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.049 4.049
3 N -0.214 5.214
4 C -0.170 4.170
5 C -0.143 4.143
6 N -0.133 5.133
7 C -0.005 4.005
8 C -0.137 4.137
9 H 0.121 0.879
10 C 0.322 3.678
11 O -0.417 6.417
12 N -0.339 5.339
13 C -0.004 4.004
14 C -0.129 4.129
15 H 0.116 0.884
16 C 0.017 3.983
17 N -0.329 5.329
18 C -0.360 4.360
19 H 0.096 0.904
20 C -0.201 4.201
21 N -0.570 5.570
22 Si 0.742 3.258
23 H -0.211 1.211
24 H -0.215 1.215
25 H -0.211 1.211
26 C 0.062 3.938
27 C -0.141 4.141
28 H 0.108 0.892
29 C -0.015 4.015
30 C -0.142 4.142
31 C -0.082 4.082
32 H 0.102 0.898
33 H 0.092 0.908
34 H 0.109 0.891
35 H 0.186 0.814
36 H 0.109 0.891
37 H 0.118 0.882
38 H 0.083 0.917
39 H 0.087 0.913
40 H 0.055 0.945
41 H 0.035 0.965
42 H 0.064 0.936
43 H 0.068 0.932
44 H 0.067 0.933
45 H 0.095 0.905
46 H 0.086 0.914
47 H 0.096 0.904
48 H 0.101 0.899
49 H 0.102 0.898
50 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges 11.322 5.212 10.821 16.506
hybrid contribution -0.661 -0.796 -0.570 1.182
sum 10.660 4.416 10.251 15.434
Atomic orbital electron populations
1.20218 0.84807 1.03974 1.03956 1.23154 0.95670 0.80980 1.05072
1.70462 1.01963 1.27937 1.21042 1.21793 0.94846 0.91857 1.08470
1.21118 0.85575 0.95449 1.12151 1.45187 1.06477 1.06777 1.54861
1.21749 0.97307 0.77555 1.03910 1.21566 0.96602 0.92132 1.03415
0.87872 1.19766 0.77723 0.87696 0.82654 1.90704 1.52873 1.70521
1.27625 1.48397 1.55434 1.14338 1.15739 1.21782 0.98317 0.81919
0.98394 1.22883 0.97206 0.99592 0.93209 0.88380 1.21320 0.90720
0.96274 0.89994 1.44219 1.03556 1.68590 1.16498 1.19004 0.82637
1.33391 1.01012 0.90424 1.24780 0.97735 1.00542 0.97039 1.69915
1.29533 1.44250 1.13297 0.86198 0.83815 0.77726 0.78016 1.21117
1.21523 1.21114 1.20988 0.81274 0.98921 0.92626 1.23209 1.00996
0.93190 0.96664 0.89194 1.22354 1.00166 0.97578 0.81449 1.21505
0.96093 0.96366 1.00276 1.20234 0.93042 0.91962 1.02974 0.89770
0.90838 0.89147 0.81423 0.89107 0.88191 0.91721 0.91254 0.94519
0.96506 0.93570 0.93179 0.93299 0.90516 0.91371 0.90378 0.89933
0.89843 0.89077
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.71 10.24 36.01 0.37 -0.34 16
2 C 0.21 2.76 7.94 -155.76 -1.24 1.52 16
3 N -0.49 -7.15 11.27 -11.02 -0.12 -7.28 16
4 C -0.02 -0.28 11.84 -17.95 -0.21 -0.49 16
5 C -0.03 -0.33 6.57 -81.73 -0.54 -0.87 16
6 N -0.45 -5.39 3.13 -109.43 -0.34 -5.74 16
7 C 0.12 1.28 5.88 -3.91 -0.02 1.26 16
8 C -0.12 -1.24 2.06 -91.57 -0.19 -1.43 16
9 H 0.10 1.06 6.71 -51.93 -0.35 0.71 16
10 C 0.53 7.16 6.90 -10.99 -0.08 7.09 16
11 O -0.54 -8.77 16.59 5.56 0.09 -8.68 16
12 N -0.61 -8.25 3.31 -172.21 -0.57 -8.82 16
13 C 0.12 1.63 6.19 -3.61 -0.02 1.61 16
14 C -0.11 -1.65 4.10 -88.48 -0.36 -2.02 16
15 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16
16 C 0.14 2.68 6.42 -3.39 -0.02 2.66 16
17 N -0.60 -14.04 3.38 -171.88 -0.58 -14.62 16
18 C -0.23 -6.09 10.25 -15.05 -0.15 -6.24 16
19 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16
20 C 0.00 -0.12 5.48 -17.44 -0.10 -0.22 16
21 N -0.92 -25.41 10.25 55.49 0.57 -24.84 16
22 Si 0.91 21.13 29.55 -169.99 -5.02 16.10 16
23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
25 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16
26 C 0.19 4.01 4.72 -3.61 -0.02 3.99 16
27 C -0.12 -1.91 4.12 -88.37 -0.36 -2.27 16
28 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16
29 C 0.11 1.48 5.69 -3.29 -0.02 1.46 16
30 C -0.10 -1.01 4.65 -26.43 -0.12 -1.13 16
31 C -0.04 -0.37 6.31 -27.64 -0.17 -0.55 16
32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
33 H 0.07 0.64 7.95 -51.93 -0.41 0.22 16
34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16
35 H 0.17 1.64 8.06 -52.48 -0.42 1.21 16
36 H 0.09 0.98 8.12 -51.93 -0.42 0.56 16
37 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16
38 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16
39 H 0.07 0.97 7.63 -51.93 -0.40 0.58 16
40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
41 H 0.02 0.33 7.57 -51.93 -0.39 -0.07 16
42 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16
43 H 0.05 1.22 7.36 -51.93 -0.38 0.84 16
44 H 0.05 1.16 6.93 -51.93 -0.36 0.80 16
45 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16
46 H 0.07 0.82 7.08 -51.93 -0.37 0.45 16
47 H 0.08 0.84 8.12 -51.92 -0.42 0.42 16
48 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16
49 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
50 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
LS Contribution 388.82 15.07 5.86 5.86
Total: -1.00 -31.83 388.82 -11.47 -43.30
By element:
Atomic # 1 Polarization: 8.76 SS G_CDS: -8.09 Total: 0.67 kcal
Atomic # 6 Polarization: 7.30 SS G_CDS: -3.26 Total: 4.04 kcal
Atomic # 7 Polarization: -60.24 SS G_CDS: -1.05 Total: -61.29 kcal
Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal
Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -31.83 -11.47 -43.30 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049012422.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.836 kcal
(2) G-P(sol) polarization free energy of solvation -31.829 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.007 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.473 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.534 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds