Wall clock time and date at job start Wed Apr 1 2020 02:58:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30782 * 125.72522 * 2 1
4 4 C 1.34431 * 109.31921 * 179.97438 * 3 2 1
5 5 C 1.33860 * 107.79833 * 359.97438 * 4 3 2
6 6 N 1.34403 * 125.72100 * 179.97438 * 2 1 3
7 7 C 1.46472 * 128.44568 * 0.20855 * 6 2 1
8 8 C 1.53282 * 108.69902 * 162.68895 * 7 6 2
9 9 H 1.09005 * 109.43143 * 290.69129 * 8 7 6
10 10 C 1.50697 * 109.43377 * 170.83231 * 8 7 6
11 11 O 1.21275 * 120.00028 * 265.26478 * 10 8 7
12 12 N 1.34774 * 119.99902 * 85.27207 * 10 8 7
13 13 C 1.46657 * 125.33448 * 185.15827 * 12 10 8
14 14 C 1.53671 * 107.97355 * 180.70891 * 13 12 10
15 15 H 1.09001 * 112.77631 * 140.60719 * 14 13 12
16 16 C 1.53984 * 109.29716 * 266.92829 * 14 13 12
17 17 N 1.46761 * 106.67426 * 138.83170 * 16 14 13
18 18 C 1.36949 * 125.33167 * 161.58463 * 17 16 14
19 19 H 1.08002 * 119.99851 * 0.02562 * 18 17 16
20 20 C 1.38810 * 119.99536 * 179.97438 * 18 17 16
21 21 N 1.31610 * 120.00531 * 0.02562 * 20 18 17
22 22 Si 1.86806 * 119.99537 * 180.02562 * 20 18 17
23 23 H 1.48497 * 109.46842 * 60.00251 * 22 20 18
24 24 H 1.48494 * 109.46909 * 180.02562 * 22 20 18
25 25 H 1.48506 * 109.46982 * 300.00318 * 22 20 18
26 26 C 1.46657 * 109.33341 * 341.55320 * 17 16 14
27 27 C 1.53670 * 107.97050 * 0.70871 * 26 17 16
28 28 H 1.08999 * 112.77501 * 139.88587 * 27 26 17
29 29 C 1.46756 * 125.33753 * 4.84941 * 12 10 8
30 30 C 1.53117 * 109.70418 * 50.75891 * 8 7 6
31 31 C 1.50709 * 128.68064 * 180.33128 * 5 4 3
32 32 H 1.08997 * 109.47271 * 90.01811 * 1 2 3
33 33 H 1.08991 * 109.47250 * 210.02433 * 1 2 3
34 34 H 1.09006 * 109.46630 * 330.02097 * 1 2 3
35 35 H 1.08004 * 126.09638 * 179.97438 * 4 3 2
36 36 H 1.08995 * 109.60449 * 282.45426 * 7 6 2
37 37 H 1.09005 * 109.59530 * 42.92749 * 7 6 2
38 38 H 1.09008 * 109.76936 * 300.33536 * 13 12 10
39 39 H 1.09005 * 109.76862 * 61.06248 * 13 12 10
40 40 H 1.09000 * 110.02034 * 258.13761 * 16 14 13
41 41 H 1.09001 * 110.01428 * 19.53307 * 16 14 13
42 42 H 0.96999 * 120.00261 * 179.97438 * 21 20 18
43 43 H 1.09002 * 109.76281 * 120.33890 * 26 17 16
44 44 H 1.09003 * 109.76510 * 241.06257 * 26 17 16
45 45 H 1.09005 * 110.02014 * 280.85893 * 29 12 10
46 46 H 1.08994 * 110.01711 * 42.24550 * 29 12 10
47 47 H 1.09009 * 109.49481 * 50.02633 * 30 8 7
48 48 H 1.08995 * 109.50372 * 170.13026 * 30 8 7
49 49 H 1.08997 * 109.75179 * 283.85914 * 31 5 4
50 50 H 1.09005 * 109.74075 * 44.57577 * 31 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2706 1.0617 0.0000
4 6 3.5602 0.6820 0.0006
5 6 3.5927 -0.6562 0.0015
6 7 2.2917 -1.0912 0.0005
7 6 1.8921 -2.5003 -0.0031
8 6 3.0928 -3.3506 -0.4330
9 1 3.3052 -3.1714 -1.4870
10 6 2.7737 -4.8090 -0.2277
11 8 3.1089 -5.3647 0.7968
12 7 2.1159 -5.4958 -1.1827
13 6 1.6525 -6.8821 -1.0635
14 6 0.9713 -7.2696 -2.3854
15 1 1.1969 -8.2908 -2.6928
16 6 -0.5407 -6.9994 -2.2771
17 7 -0.9568 -6.4145 -3.5572
18 6 -2.2446 -6.3541 -4.0190
19 1 -3.0510 -6.7576 -3.4245
20 6 -2.5136 -5.7733 -5.2508
21 7 -1.5310 -5.2812 -5.9750
22 14 -4.2704 -5.6903 -5.8804
23 1 -5.1014 -4.9116 -4.9275
24 1 -4.2890 -5.0284 -7.2096
25 1 -4.8171 -7.0654 -6.0050
26 6 0.2226 -5.9041 -4.2639
27 6 1.4575 -6.1941 -3.3965
28 1 2.3178 -6.5182 -3.9820
29 6 1.7454 -4.9715 -2.5024
30 6 4.3181 -2.9744 0.4047
31 6 4.7918 -1.5692 0.0092
32 1 -0.3633 -0.0003 -1.0276
33 1 -0.3633 -0.8897 0.5142
34 1 -0.3633 0.8902 0.5135
35 1 4.4171 1.3395 0.0003
36 1 1.5763 -2.7934 0.9981
37 1 1.0710 -2.6457 -0.7051
38 1 2.5018 -7.5402 -0.8797
39 1 0.9391 -6.9632 -0.2433
40 1 -1.0751 -7.9332 -2.1022
41 1 -0.7373 -6.2989 -1.4654
42 1 -1.7190 -4.8757 -6.8359
43 1 0.3217 -6.4066 -5.2261
44 1 0.1238 -4.8295 -4.4177
45 1 0.8549 -4.3482 -2.4198
46 1 2.5695 -4.3921 -2.9185
47 1 4.0529 -2.9842 1.4620
48 1 5.1176 -3.6926 0.2229
49 1 5.2397 -1.5974 -0.9841
50 1 5.5231 -1.2104 0.7335
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049012422.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:58:55
Heat of formation + Delta-G solvation = 33.981948 kcal
Electronic energy + Delta-G solvation = -31271.379825 eV
Core-core repulsion = 27299.036753 eV
Total energy + Delta-G solvation = -3972.343072 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-43.43381 -41.69521 -39.96347 -37.32409 -36.65350 -34.41137 -34.10986 -32.41280
-31.63070 -31.60280 -30.66564 -27.56430 -27.27340 -27.10047 -25.83542 -24.42361
-23.09352 -22.00182 -21.88011 -20.86273 -20.41105 -19.83933 -18.92417 -18.25974
-17.78678 -17.24285 -16.92477 -16.69158 -16.29757 -16.12658 -15.51278 -15.42426
-15.14571 -14.99779 -14.76849 -14.63978 -14.41233 -14.11012 -13.97194 -13.81336
-13.59151 -13.49427 -13.43760 -13.25843 -13.16585 -12.88147 -12.77675 -12.71218
-12.59886 -12.20064 -12.05126 -12.00808 -11.86091 -11.73788 -11.55514 -11.45899
-11.06212 -10.90976 -10.67298 -10.57845 -9.74738 -9.15691 -8.87116 -7.84901
-5.19259 1.02100 1.26557 1.48142 1.49208 1.55720 1.69401 1.93358
2.10774 2.50190 3.15272 3.26088 3.33626 3.42078 3.46101 3.56130
3.57572 3.74632 3.83614 3.86777 3.98274 4.06670 4.10260 4.20576
4.23921 4.28228 4.35742 4.46521 4.52221 4.55657 4.59208 4.64827
4.72080 4.81188 4.83498 4.89589 4.90359 4.97974 4.99989 5.01461
5.11349 5.13963 5.17346 5.33460 5.41313 5.48836 5.63667 5.79583
5.80970 6.18525 6.22328 6.37162 6.94682 7.08946 7.13492 7.80762
8.41441 9.24486
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.011138 B = 0.003330 C = 0.002764
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2513.322732 B = 8406.843928 C =10127.637969
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 C 0.195 3.805
3 N -0.528 5.528
4 C -0.043 4.043
5 C -0.029 4.029
6 N -0.452 5.452
7 C 0.120 3.880
8 C -0.108 4.108
9 H 0.114 0.886
10 C 0.540 3.460
11 O -0.566 6.566
12 N -0.606 5.606
13 C 0.123 3.877
14 C -0.096 4.096
15 H 0.116 0.884
16 C 0.140 3.860
17 N -0.622 5.622
18 C -0.245 4.245
19 H 0.079 0.921
20 C -0.057 4.057
21 N -0.946 5.946
22 Si 0.971 3.029
23 H -0.279 1.279
24 H -0.295 1.295
25 H -0.279 1.279
26 C 0.198 3.802
27 C -0.110 4.110
28 H 0.114 0.886
29 C 0.117 3.883
30 C -0.100 4.100
31 C -0.037 4.037
32 H 0.084 0.916
33 H 0.084 0.916
34 H 0.096 0.904
35 H 0.187 0.813
36 H 0.090 0.910
37 H 0.099 0.901
38 H 0.081 0.919
39 H 0.067 0.933
40 H 0.038 0.962
41 H 0.016 0.984
42 H 0.247 0.753
43 H 0.013 0.987
44 H 0.019 0.981
45 H 0.057 0.943
46 H 0.094 0.906
47 H 0.066 0.934
48 H 0.091 0.909
49 H 0.101 0.899
50 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.015 4.200 11.200 17.677
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.066 4.066
3 N -0.249 5.249
4 C -0.190 4.190
5 C -0.143 4.143
6 N -0.136 5.136
7 C -0.003 4.003
8 C -0.130 4.130
9 H 0.132 0.868
10 C 0.328 3.672
11 O -0.446 6.446
12 N -0.338 5.338
13 C 0.000 4.000
14 C -0.115 4.115
15 H 0.134 0.866
16 C 0.014 3.986
17 N -0.349 5.349
18 C -0.374 4.374
19 H 0.096 0.904
20 C -0.250 4.250
21 N -0.594 5.594
22 Si 0.800 3.200
23 H -0.205 1.205
24 H -0.221 1.221
25 H -0.205 1.205
26 C 0.072 3.928
27 C -0.130 4.130
28 H 0.132 0.868
29 C -0.006 4.006
30 C -0.138 4.138
31 C -0.074 4.074
32 H 0.103 0.897
33 H 0.103 0.897
34 H 0.114 0.886
35 H 0.205 0.795
36 H 0.108 0.892
37 H 0.117 0.883
38 H 0.099 0.901
39 H 0.085 0.915
40 H 0.056 0.944
41 H 0.034 0.966
42 H 0.056 0.944
43 H 0.031 0.969
44 H 0.037 0.963
45 H 0.076 0.924
46 H 0.113 0.887
47 H 0.084 0.916
48 H 0.109 0.891
49 H 0.119 0.881
50 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 12.755 4.684 11.634 17.888
hybrid contribution -1.138 -0.656 -0.769 1.522
sum 11.617 4.028 10.865 16.408
Atomic orbital electron populations
1.20289 0.83460 1.04831 1.04223 1.23599 0.96690 0.81108 1.05246
1.70430 1.03189 1.29075 1.22174 1.22226 0.94839 0.92858 1.09057
1.21618 0.86172 0.95711 1.10790 1.45288 1.06778 1.06868 1.54685
1.21731 0.97445 0.77191 1.03886 1.21544 0.96963 0.90148 1.04306
0.86814 1.20095 0.76828 0.88405 0.81869 1.90699 1.53967 1.71303
1.28584 1.48398 1.55351 1.14351 1.15674 1.21728 0.98728 0.82358
0.97165 1.22812 0.94438 1.00381 0.93882 0.86619 1.21473 0.93371
0.95802 0.87920 1.44498 1.03282 1.68941 1.18157 1.19351 0.84240
1.32668 1.01114 0.90353 1.25502 1.01060 1.00938 0.97516 1.70122
1.30972 1.45161 1.13194 0.85268 0.79998 0.77707 0.77049 1.20528
1.22082 1.20545 1.20701 0.83270 0.96465 0.92337 1.23076 0.99107
0.94446 0.96329 0.86765 1.22154 1.00482 0.96575 0.81347 1.21482
0.95701 0.97289 0.99293 1.20343 0.92115 0.90377 1.04613 0.89720
0.89721 0.88562 0.79547 0.89196 0.88287 0.90091 0.91476 0.94416
0.96597 0.94351 0.96889 0.96326 0.92427 0.88734 0.91568 0.89059
0.88101 0.86988
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.37 10.24 71.24 0.73 -0.64 16
2 C 0.20 4.98 7.94 138.25 1.10 6.08 16
3 N -0.53 -15.14 11.27 -188.77 -2.13 -17.27 16
4 C -0.04 -1.03 11.84 83.30 0.99 -0.05 16
5 C -0.03 -0.61 6.57 40.73 0.27 -0.34 16
6 N -0.45 -10.36 3.13 -500.14 -1.57 -11.92 16
7 C 0.12 2.46 5.88 86.48 0.51 2.97 16
8 C -0.11 -2.07 2.06 -11.41 -0.02 -2.10 16
9 H 0.11 1.98 6.71 -2.38 -0.02 1.96 16
10 C 0.54 13.18 6.90 87.66 0.60 13.79 16
11 O -0.57 -17.19 16.59 -3.01 -0.05 -17.24 16
12 N -0.61 -14.98 3.31 -817.16 -2.71 -17.68 16
13 C 0.12 3.06 6.19 86.58 0.54 3.59 16
14 C -0.10 -2.69 4.10 -9.40 -0.04 -2.73 16
15 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16
16 C 0.14 5.12 6.42 86.66 0.56 5.67 16
17 N -0.62 -29.30 3.38 -697.70 -2.36 -31.66 16
18 C -0.24 -12.98 10.25 84.03 0.86 -12.12 16
19 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16
20 C -0.06 -3.05 5.48 84.86 0.47 -2.59 16
21 N -0.95 -53.51 10.25 21.65 0.22 -53.29 16
22 Si 0.97 43.90 29.55 68.60 2.03 45.93 16
23 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16
24 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16
25 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16
26 C 0.20 8.59 4.72 86.57 0.41 9.00 16
27 C -0.11 -3.29 4.12 -9.34 -0.04 -3.33 16
28 H 0.11 2.93 8.14 -2.39 -0.02 2.92 16
29 C 0.12 3.02 5.69 86.73 0.49 3.51 16
30 C -0.10 -1.66 4.65 30.79 0.14 -1.52 16
31 C -0.04 -0.51 6.31 30.01 0.19 -0.32 16
32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16
33 H 0.08 1.42 7.95 -2.39 -0.02 1.41 16
34 H 0.10 1.73 8.14 -2.38 -0.02 1.72 16
35 H 0.19 3.39 8.06 -2.91 -0.02 3.36 16
36 H 0.09 1.85 8.12 -2.39 -0.02 1.83 16
37 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16
38 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16
39 H 0.07 1.73 7.63 -2.38 -0.02 1.72 16
40 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16
41 H 0.02 0.60 7.57 -2.39 -0.02 0.58 16
42 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16
43 H 0.01 0.65 7.36 -2.39 -0.02 0.63 16
44 H 0.02 0.91 6.93 -2.39 -0.02 0.89 16
45 H 0.06 1.74 7.58 -2.38 -0.02 1.73 16
46 H 0.09 1.98 7.08 -2.39 -0.02 1.96 16
47 H 0.07 1.28 8.12 -2.38 -0.02 1.26 16
48 H 0.09 1.41 8.11 -2.39 -0.02 1.39 16
49 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16
50 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16
Total: -1.00 -69.99 388.82 2.12 -67.87
By element:
Atomic # 1 Polarization: 15.46 SS G_CDS: 0.93 Total: 16.39 kcal
Atomic # 6 Polarization: 11.13 SS G_CDS: 7.75 Total: 18.87 kcal
Atomic # 7 Polarization: -123.28 SS G_CDS: -8.54 Total: -131.82 kcal
Atomic # 8 Polarization: -17.19 SS G_CDS: -0.05 Total: -17.24 kcal
Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal
Total: -69.99 2.12 -67.87 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049012422.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.848 kcal
(2) G-P(sol) polarization free energy of solvation -69.986 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.862 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.866 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.982 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds