Wall clock time and date at job start Wed Apr 1 2020 02:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30793 * 125.72342 * 2 1 4 4 C 1.34423 * 109.32167 * 179.97438 * 3 2 1 5 5 C 1.33863 * 107.79729 * 359.97438 * 4 3 2 6 6 N 1.34405 * 125.72417 * 179.97438 * 2 1 3 7 7 C 1.46476 * 128.44424 * 0.17044 * 6 2 1 8 8 C 1.53275 * 108.69134 * 162.64920 * 7 6 2 9 9 C 1.53113 * 109.71649 * 50.77023 * 8 7 6 10 10 H 1.09000 * 109.52339 * 50.06072 * 9 8 7 11 11 C 1.50697 * 109.50122 * 170.14818 * 9 8 7 12 12 O 1.21272 * 120.00004 * 359.83517 * 11 9 8 13 13 N 1.34779 * 119.99660 * 179.83551 * 11 9 8 14 14 C 1.46665 * 125.33124 * 179.97438 * 13 11 9 15 15 C 1.53669 * 107.96988 * 180.44778 * 14 13 11 16 16 H 1.09006 * 112.77554 * 140.60947 * 15 14 13 17 17 C 1.53987 * 109.29707 * 266.93161 * 15 14 13 18 18 N 1.46754 * 106.67533 * 138.83933 * 17 15 14 19 19 C 1.36936 * 125.33503 * 161.58792 * 18 17 15 20 20 H 1.07999 * 119.99787 * 354.06753 * 19 18 17 21 21 C 1.38810 * 120.00096 * 174.06260 * 19 18 17 22 22 N 1.31616 * 120.00245 * 6.96495 * 21 19 18 23 23 Si 1.86802 * 119.99968 * 186.96486 * 21 19 18 24 24 H 1.48505 * 109.47273 * 94.98703 * 23 21 19 25 25 H 1.48500 * 109.47195 * 214.98673 * 23 21 19 26 26 H 1.48499 * 109.47373 * 334.99001 * 23 21 19 27 27 C 1.46659 * 109.33270 * 341.54514 * 18 17 15 28 28 C 1.53674 * 107.97019 * 0.71294 * 27 18 17 29 29 H 1.09005 * 112.77260 * 139.88143 * 28 27 18 30 30 C 1.46750 * 125.33769 * 359.69288 * 13 11 9 31 31 C 1.50708 * 128.68098 * 180.08675 * 5 4 3 32 32 H 1.09000 * 109.46633 * 270.00009 * 1 2 3 33 33 H 1.08998 * 109.47034 * 30.00035 * 1 2 3 34 34 H 1.09000 * 109.46617 * 150.00287 * 1 2 3 35 35 H 1.07994 * 126.10135 * 179.97438 * 4 3 2 36 36 H 1.08993 * 109.59675 * 282.40187 * 7 6 2 37 37 H 1.08993 * 109.59825 * 42.87850 * 7 6 2 38 38 H 1.09000 * 109.43266 * 290.69214 * 8 7 6 39 39 H 1.09001 * 109.43007 * 170.84112 * 8 7 6 40 40 H 1.09003 * 109.76526 * 300.08069 * 14 13 11 41 41 H 1.08992 * 109.76360 * 60.81715 * 14 13 11 42 42 H 1.08997 * 110.01331 * 258.14137 * 17 15 14 43 43 H 1.08997 * 110.01697 * 19.53309 * 17 15 14 44 44 H 0.96997 * 120.00029 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.76700 * 120.34093 * 27 18 17 46 46 H 1.08995 * 109.77146 * 241.07007 * 27 18 17 47 47 H 1.09000 * 110.02044 * 281.11739 * 30 13 11 48 48 H 1.09000 * 110.02042 * 42.51077 * 30 13 11 49 49 H 1.09004 * 109.74871 * 44.60173 * 31 5 4 50 50 H 1.09002 * 109.74525 * 283.88483 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5603 0.6823 0.0006 5 6 3.5929 -0.6560 0.0015 6 7 2.2918 -1.0912 0.0005 7 6 1.8922 -2.5003 -0.0023 8 6 3.0925 -3.3504 -0.4335 9 6 4.3189 -2.9743 0.4026 10 1 4.0557 -2.9846 1.4603 11 6 5.4240 -3.9671 0.1495 12 8 5.2480 -4.8870 -0.6209 13 7 6.6079 -3.8327 0.7795 14 6 7.7592 -4.7274 0.6215 15 6 8.8879 -4.2123 1.5280 16 1 9.4368 -5.0170 2.0173 17 6 9.8014 -3.2727 0.7193 18 7 10.1296 -2.1446 1.5987 19 6 11.1755 -1.2790 1.4197 20 1 11.8933 -1.4551 0.6322 21 6 11.3129 -0.1753 2.2501 22 7 10.5219 -0.0334 3.2925 23 14 12.6205 1.1087 1.8884 24 1 12.0214 2.2179 1.1033 25 1 13.1585 1.6410 3.1661 26 1 13.7211 0.4883 1.1081 27 6 9.1614 -2.0890 2.6989 28 6 8.1741 -3.2531 2.5209 29 1 7.9137 -3.7334 3.4641 30 6 6.9490 -2.7648 1.7265 31 6 4.7919 -1.5689 0.0042 32 1 -0.3632 0.0000 1.0277 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3632 -0.8900 -0.5138 35 1 4.4171 1.3396 0.0003 36 1 1.5779 -2.7932 0.9994 37 1 1.0703 -2.6459 -0.7031 38 1 3.3037 -3.1714 -1.4877 39 1 2.8619 -4.4053 -0.2847 40 1 7.4825 -5.7397 0.9162 41 1 8.0895 -4.7231 -0.4172 42 1 10.7120 -3.7966 0.4289 43 1 9.2776 -2.9148 -0.1670 44 1 10.6182 0.7377 3.8730 45 1 9.6805 -2.1884 3.6522 46 1 8.6236 -1.1415 2.6692 47 1 7.1953 -1.8510 1.1857 48 1 6.1133 -2.5848 2.4028 49 1 5.5262 -1.2104 0.7256 50 1 5.2358 -1.5968 -0.9910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049059923.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:05 Heat of formation + Delta-G solvation = 53.324411 kcal Electronic energy + Delta-G solvation = -31186.837468 eV Core-core repulsion = 27215.333149 eV Total energy + Delta-G solvation = -3971.504319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.51668 -40.48016 -38.61287 -36.38516 -35.11604 -33.65136 -32.32597 -31.41727 -30.28031 -30.03238 -29.58248 -27.02005 -25.64880 -25.46413 -24.48288 -23.47544 -22.09382 -20.80972 -20.27911 -19.47611 -19.43602 -18.93545 -17.35904 -16.86285 -16.75643 -16.23255 -15.78414 -15.39232 -14.87251 -14.69191 -14.31436 -14.20656 -14.01283 -13.90651 -13.69905 -13.29965 -13.24333 -13.17120 -12.99842 -12.70976 -12.58021 -12.23831 -12.08059 -12.00978 -11.88060 -11.75883 -11.44352 -11.38690 -11.22228 -10.93904 -10.84213 -10.42429 -10.18837 -10.10677 -10.06188 -9.98301 -9.72803 -9.67939 -9.61763 -8.64007 -8.51908 -8.26140 -6.89410 -5.79526 -3.11907 1.92471 2.56360 2.59151 2.99717 3.07353 3.37606 3.43613 3.44956 4.06365 4.26411 4.30357 4.34760 4.44774 4.53367 4.65534 4.78112 4.83486 4.87885 4.91094 5.05687 5.14214 5.20333 5.24751 5.34522 5.38316 5.44423 5.44937 5.47267 5.54212 5.55566 5.62853 5.73239 5.79881 5.81364 5.83638 5.85468 6.04266 6.14404 6.28194 6.28719 6.36012 6.52093 6.60484 6.70542 6.78005 7.10624 7.42586 7.50257 7.58637 7.74011 8.02439 8.13178 8.19714 9.16141 9.76446 10.40107 11.32533 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011684 B = 0.003205 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.859099 B = 8734.903763 C =10596.238562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.201 3.799 3 N -0.493 5.493 4 C -0.016 4.016 5 C -0.020 4.020 6 N -0.454 5.454 7 C 0.105 3.895 8 C -0.113 4.113 9 C -0.105 4.105 10 H 0.101 0.899 11 C 0.534 3.466 12 O -0.548 6.548 13 N -0.606 5.606 14 C 0.119 3.881 15 C -0.109 4.109 16 H 0.097 0.903 17 C 0.143 3.857 18 N -0.602 5.602 19 C -0.231 4.231 20 H 0.078 0.922 21 C -0.005 4.005 22 N -0.920 5.920 23 Si 0.910 3.090 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.186 3.814 28 C -0.122 4.122 29 H 0.088 0.912 30 C 0.106 3.894 31 C -0.042 4.042 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.172 0.828 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.019 0.981 44 H 0.253 0.747 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.081 0.919 48 H 0.068 0.932 49 H 0.103 0.897 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.478 -7.206 -3.687 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.061 4.061 3 N -0.212 5.212 4 C -0.163 4.163 5 C -0.133 4.133 6 N -0.139 5.139 7 C -0.018 4.018 8 C -0.151 4.151 9 C -0.127 4.127 10 H 0.119 0.881 11 C 0.322 3.678 12 O -0.426 6.426 13 N -0.338 5.338 14 C -0.004 4.004 15 C -0.129 4.129 16 H 0.115 0.885 17 C 0.017 3.983 18 N -0.328 5.328 19 C -0.359 4.359 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.567 5.567 23 Si 0.741 3.259 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.061 3.939 28 C -0.141 4.141 29 H 0.106 0.894 30 C -0.016 4.016 31 C -0.080 4.080 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.189 0.811 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.037 0.963 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.099 0.901 48 H 0.086 0.914 49 H 0.121 0.879 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.893 -6.838 -4.035 20.494 hybrid contribution 1.098 -0.080 -0.015 1.101 sum -17.796 -6.917 -4.050 19.518 Atomic orbital electron populations 1.20139 0.85109 1.03752 1.03337 1.23095 0.95529 0.81340 1.06089 1.70460 1.02032 1.28029 1.20692 1.21891 0.94812 0.91983 1.07661 1.20976 0.85124 0.95348 1.11874 1.45278 1.06331 1.07117 1.55163 1.22007 0.98734 0.77847 1.03176 1.21681 0.91904 1.00574 1.00907 1.21357 0.94367 0.94709 1.02263 0.88132 1.19960 0.82118 0.85734 0.80022 1.90682 1.81213 1.34221 1.36514 1.48329 1.12580 1.28953 1.43968 1.21756 0.85289 0.93087 1.00251 1.22879 0.95518 0.98218 0.96284 0.88500 1.21320 0.95600 0.88564 0.92841 1.44218 1.31594 1.31120 1.25915 1.19042 1.01930 1.01326 1.13590 0.90401 1.24795 0.99393 0.98471 0.97447 1.69943 1.40753 1.30086 1.15941 0.86127 0.80742 0.81895 0.77172 1.21525 1.21754 1.20659 1.21000 0.88403 0.92523 0.91967 1.23175 0.95111 0.98626 0.97235 0.89359 1.22390 0.97624 0.90674 0.90947 1.20358 0.93648 0.90034 1.04007 0.90307 0.89279 0.91118 0.81057 0.89618 0.88828 0.90085 0.88412 0.91929 0.91293 0.94637 0.96331 0.93655 0.93572 0.92922 0.90068 0.91366 0.87913 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.24 36.01 0.37 -0.10 16 2 C 0.20 2.35 7.94 -155.75 -1.24 1.12 16 3 N -0.49 -7.19 11.27 -11.02 -0.12 -7.31 16 4 C -0.02 -0.23 11.84 -17.95 -0.21 -0.44 16 5 C -0.02 -0.25 6.57 -81.73 -0.54 -0.78 16 6 N -0.45 -4.95 3.13 -109.43 -0.34 -5.29 16 7 C 0.10 0.79 6.68 -3.91 -0.03 0.77 16 8 C -0.11 -1.04 4.66 -26.53 -0.12 -1.16 16 9 C -0.11 -1.14 1.94 -91.43 -0.18 -1.32 16 10 H 0.10 1.00 7.86 -51.93 -0.41 0.59 16 11 C 0.53 7.39 7.18 -10.99 -0.08 7.31 16 12 O -0.55 -9.10 16.12 5.56 0.09 -9.01 16 13 N -0.61 -8.55 3.31 -172.35 -0.57 -9.12 16 14 C 0.12 1.70 6.19 -3.61 -0.02 1.68 16 15 C -0.11 -1.70 4.10 -88.48 -0.36 -2.07 16 16 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 17 C 0.14 2.76 6.43 -3.39 -0.02 2.74 16 18 N -0.60 -14.31 3.38 -171.89 -0.58 -14.89 16 19 C -0.23 -6.14 10.24 -15.06 -0.15 -6.30 16 20 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 21 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 22 N -0.92 -25.65 10.30 55.49 0.57 -25.07 16 23 Si 0.91 21.48 29.56 -169.99 -5.02 16.46 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.19 4.06 4.74 -3.61 -0.02 4.04 16 28 C -0.12 -1.97 4.10 -88.48 -0.36 -2.33 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 30 C 0.11 1.51 4.40 -3.40 -0.01 1.50 16 31 C -0.04 -0.49 5.19 -27.59 -0.14 -0.63 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.36 7.59 -51.93 -0.39 -0.04 16 35 H 0.17 2.19 8.06 -52.49 -0.42 1.76 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.52 7.72 -51.93 -0.40 0.12 16 38 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 39 H 0.10 0.86 7.77 -51.93 -0.40 0.46 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.02 7.63 -51.93 -0.40 0.63 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.02 0.37 7.56 -51.93 -0.39 -0.02 16 44 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.05 1.14 7.52 -51.93 -0.39 0.75 16 46 H 0.05 1.27 6.80 -51.93 -0.35 0.91 16 47 H 0.08 1.30 6.32 -51.93 -0.33 0.97 16 48 H 0.07 0.84 7.58 -51.93 -0.39 0.44 16 49 H 0.10 1.23 5.40 -51.93 -0.28 0.95 16 50 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -32.74 383.46 -11.33 -44.08 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.91 Total: 0.59 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -3.22 Total: 3.80 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -1.05 Total: -61.69 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.74 -11.33 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049059923.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.402 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds