Wall clock time and date at job start Wed Apr 1 2020 03:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46830 * 2 1 4 4 N 1.32149 * 120.54224 * 268.10478 * 3 2 1 5 5 C 1.31869 * 120.96889 * 180.29054 * 4 3 2 6 6 N 1.31865 * 122.09216 * 359.74627 * 5 4 3 7 7 C 1.32147 * 120.97400 * 359.97438 * 6 5 4 8 8 C 1.50693 * 120.54303 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.46926 * 275.12235 * 8 7 6 10 10 C 1.39949 * 120.53441 * 87.86695 * 3 2 1 11 11 C 1.47836 * 120.94208 * 359.97061 * 10 3 2 12 12 O 1.21548 * 119.99614 * 85.06447 * 11 10 3 13 13 N 1.34777 * 119.99844 * 265.07179 * 11 10 3 14 14 C 1.46766 * 125.34190 * 354.94424 * 13 11 10 15 15 C 1.53967 * 106.62915 * 198.51913 * 14 13 11 16 16 H 1.08993 * 113.60997 * 94.61661 * 15 14 13 17 17 C 1.53931 * 109.25086 * 221.81271 * 15 14 13 18 18 N 1.46741 * 106.72121 * 81.63602 * 17 15 14 19 19 C 1.36939 * 125.33037 * 198.32237 * 18 17 15 20 20 H 1.08002 * 119.99937 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00052 * 0.02562 * 19 18 17 22 22 N 1.31623 * 119.99881 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00246 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46990 * 60.00494 * 23 21 19 25 25 H 1.48499 * 109.47094 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47538 * 300.00773 * 23 21 19 27 27 C 1.46642 * 109.34421 * 18.33616 * 18 17 15 28 28 C 1.53690 * 108.00714 * 359.16686 * 27 18 17 29 29 H 1.09003 * 112.56338 * 105.90601 * 28 27 18 30 30 C 1.46676 * 125.33354 * 174.94613 * 13 11 10 31 31 H 1.09002 * 109.47244 * 56.05764 * 1 2 3 32 32 H 1.09006 * 109.46962 * 176.05151 * 1 2 3 33 33 H 1.08994 * 109.47351 * 296.05244 * 1 2 3 34 34 H 1.09000 * 109.46725 * 240.00486 * 2 1 3 35 35 H 1.08997 * 109.47493 * 120.00652 * 2 1 3 36 36 H 1.07996 * 118.95528 * 179.72221 * 5 4 3 37 37 H 1.08997 * 109.47500 * 35.11926 * 8 7 6 38 38 H 1.09000 * 109.47353 * 155.12667 * 8 7 6 39 39 H 1.08996 * 109.47153 * 61.11600 * 9 8 7 40 40 H 1.09004 * 109.47053 * 181.10879 * 9 8 7 41 41 H 1.08996 * 109.47200 * 301.11063 * 9 8 7 42 42 H 1.09000 * 110.02898 * 79.22731 * 14 13 11 43 43 H 1.08999 * 110.02977 * 317.81479 * 14 13 11 44 44 H 1.09003 * 110.00898 * 200.94676 * 17 15 14 45 45 H 1.08997 * 110.01304 * 322.31837 * 17 15 14 46 46 H 0.97004 * 119.99955 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.76601 * 239.52768 * 27 18 17 48 48 H 1.09000 * 109.76157 * 118.80623 * 27 18 17 49 49 H 1.09003 * 109.76720 * 59.83602 * 30 13 11 50 50 H 1.08995 * 109.77088 * 299.07656 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2916 2.0414 -1.1375 5 6 2.7368 3.2827 -1.1471 6 7 2.9393 3.9629 -0.0358 7 6 2.7009 3.4217 1.1459 8 6 2.9364 4.2078 2.4098 9 6 4.4063 4.0892 2.8178 10 6 2.2269 2.1061 1.2046 11 6 1.9455 1.4569 2.5026 12 8 2.7927 0.7647 3.0322 13 7 0.7494 1.6324 3.0985 14 6 -0.3152 2.5220 2.6197 15 6 -1.2588 2.7616 3.8126 16 1 -1.0319 3.6682 4.3734 17 6 -2.7177 2.7051 3.3249 18 7 -3.0835 1.2859 3.2512 19 6 -4.1394 0.7760 2.5439 20 1 -4.3306 -0.2870 2.5502 21 6 -4.9640 1.6252 1.8188 22 7 -4.7306 2.9206 1.8108 23 14 -6.4047 0.9298 0.8545 24 1 -7.3326 0.2353 1.7829 25 1 -7.1229 2.0355 0.1713 26 1 -5.9037 -0.0344 -0.1576 27 6 -2.1416 0.4992 4.0539 28 6 -1.1082 1.4647 4.6556 29 1 -1.2648 1.6341 5.7209 30 6 0.3077 0.9642 4.3272 31 1 -0.3634 0.5738 -0.8526 32 1 -0.3633 -1.0253 -0.0708 33 1 -0.3634 0.4513 0.9232 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.9424 3.7570 -2.0953 37 1 2.6907 5.2556 2.2371 38 1 2.3054 3.8130 3.2061 39 1 5.0364 4.5020 2.0300 40 1 4.5723 4.6416 3.7427 41 1 4.6572 3.0397 2.9713 42 1 -0.8592 2.0474 1.8030 43 1 0.1109 3.4678 2.2850 44 1 -3.3675 3.2214 4.0316 45 1 -2.7996 3.1630 2.3392 46 1 -5.3066 3.5140 1.3038 47 1 -1.6383 -0.2314 3.4206 48 1 -2.6769 -0.0128 4.8535 49 1 0.9849 1.2110 5.1449 50 1 0.2913 -0.1149 4.1746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049067723.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:58 Heat of formation + Delta-G solvation = 34.436836 kcal Electronic energy + Delta-G solvation = -32336.835807 eV Core-core repulsion = 28364.512461 eV Total energy + Delta-G solvation = -3972.323346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57984 -40.03361 -38.23703 -35.83333 -35.05520 -34.33783 -32.37045 -31.64537 -30.83519 -30.16811 -29.65849 -26.15166 -25.68915 -25.36773 -24.93112 -23.37356 -22.77605 -20.91991 -20.19557 -19.81728 -19.47262 -18.17535 -17.45595 -16.82891 -16.59463 -16.04625 -15.55944 -15.12211 -14.77604 -14.47719 -14.43344 -14.07362 -13.89504 -13.81575 -13.65602 -13.30237 -13.01438 -12.91178 -12.76915 -12.34203 -12.24518 -12.05763 -11.82387 -11.71526 -11.67878 -11.57365 -11.47663 -11.22714 -11.04579 -10.90348 -10.85669 -10.48553 -10.43802 -10.23187 -10.13390 -9.99779 -9.87103 -9.69241 -9.50814 -9.36981 -8.70392 -8.52006 -6.92523 -5.77060 -3.15645 0.57731 0.89073 2.46007 3.00030 3.35255 3.40487 3.41044 3.54065 3.80885 3.86491 4.09687 4.35532 4.42260 4.76100 4.80122 4.89231 4.92463 5.02748 5.06210 5.15036 5.19158 5.29182 5.36146 5.39999 5.42601 5.47746 5.55843 5.64717 5.66723 5.68199 5.79148 5.81028 5.82136 5.95790 5.99987 6.00681 6.09789 6.14949 6.19834 6.28766 6.35481 6.44108 6.57081 6.62984 6.74384 6.81893 7.33613 7.52330 7.54167 7.71602 7.92225 8.07140 8.22545 9.13891 9.74330 10.36817 11.29527 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.004048 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.155506 B = 6914.910784 C = 7667.547892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C 0.222 3.778 4 N -0.520 5.520 5 C 0.310 3.690 6 N -0.522 5.522 7 C 0.214 3.786 8 C -0.082 4.082 9 C -0.143 4.143 10 C -0.221 4.221 11 C 0.589 3.411 12 O -0.535 6.535 13 N -0.598 5.598 14 C 0.109 3.891 15 C -0.122 4.122 16 H 0.089 0.911 17 C 0.171 3.829 18 N -0.599 5.599 19 C -0.226 4.226 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.923 5.923 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.142 3.858 28 C -0.109 4.109 29 H 0.097 0.903 30 C 0.120 3.880 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.200 0.800 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.021 0.979 45 H 0.096 0.904 46 H 0.253 0.747 47 H 0.025 0.975 48 H 0.024 0.976 49 H 0.066 0.934 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.634 1.431 0.550 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C 0.076 3.924 4 N -0.234 5.234 5 C 0.022 3.978 6 N -0.236 5.236 7 C 0.067 3.933 8 C -0.120 4.120 9 C -0.201 4.201 10 C -0.228 4.228 11 C 0.376 3.624 12 O -0.413 6.413 13 N -0.330 5.330 14 C -0.013 4.013 15 C -0.142 4.142 16 H 0.107 0.893 17 C 0.046 3.954 18 N -0.326 5.326 19 C -0.354 4.354 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.571 5.571 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.016 3.984 28 C -0.128 4.128 29 H 0.115 0.885 30 C -0.003 4.003 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.217 0.783 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.039 0.961 45 H 0.114 0.886 46 H 0.064 0.936 47 H 0.043 0.957 48 H 0.041 0.959 49 H 0.084 0.916 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.152 1.561 -0.230 15.234 hybrid contribution -1.042 -0.591 0.124 1.204 sum 14.110 0.970 -0.106 14.144 Atomic orbital electron populations 1.21778 0.91958 1.03235 1.03524 1.20712 0.97911 0.89181 1.04354 1.21832 0.87628 0.96450 0.86514 1.68292 1.14375 1.11325 1.29443 1.25093 0.88951 0.86785 0.96934 1.68247 1.18680 1.38289 0.98401 1.21778 0.87789 0.89275 0.94444 1.20667 0.99153 1.00604 0.91617 1.21680 0.93879 1.02810 1.01710 1.21373 1.08046 0.97391 0.95989 1.17295 0.80997 0.80716 0.83439 1.90791 1.45304 1.40248 1.64929 1.48296 1.14448 1.43876 1.26408 1.22251 0.87605 0.92807 0.98649 1.23246 0.99364 0.96944 0.94626 0.89296 1.21403 0.85966 0.86276 1.01800 1.44193 1.30945 1.02102 1.55333 1.18988 1.02545 0.92349 1.21483 0.90497 1.24752 0.99378 0.95474 1.00597 1.69833 1.39923 1.01704 1.45622 0.86196 0.82153 0.77631 0.79790 1.21172 1.21559 1.21124 1.21220 0.90415 0.93152 0.93577 1.22786 0.93210 0.96604 1.00195 0.88454 1.21845 0.95153 0.97255 0.86000 0.91964 0.91164 0.91313 0.89059 0.89574 0.78347 0.88745 0.89748 0.92013 0.91370 0.92062 0.89741 0.92072 0.96102 0.88572 0.93607 0.95726 0.95851 0.91609 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.89 37.16 0.37 -1.76 16 2 C -0.08 -1.13 5.87 -27.88 -0.16 -1.30 16 3 C 0.22 3.29 6.12 -81.82 -0.50 2.79 16 4 N -0.52 -7.37 10.36 -10.48 -0.11 -7.48 16 5 C 0.31 3.87 12.27 -92.03 -1.13 2.74 16 6 N -0.52 -7.01 10.36 -10.48 -0.11 -7.12 16 7 C 0.21 2.95 5.86 -81.82 -0.48 2.47 16 8 C -0.08 -0.95 6.00 -27.88 -0.17 -1.12 16 9 C -0.14 -1.48 9.90 37.16 0.37 -1.11 16 10 C -0.22 -3.30 4.70 -104.69 -0.49 -3.79 16 11 C 0.59 9.27 4.53 -12.33 -0.06 9.22 16 12 O -0.54 -9.61 17.34 5.32 0.09 -9.52 16 13 N -0.60 -9.01 3.11 -173.41 -0.54 -9.55 16 14 C 0.11 1.74 5.61 -3.39 -0.02 1.72 16 15 C -0.12 -1.99 4.17 -88.35 -0.37 -2.36 16 16 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 17 C 0.17 3.72 4.81 -3.43 -0.02 3.70 16 18 N -0.60 -13.95 3.37 -171.93 -0.58 -14.53 16 19 C -0.23 -5.88 10.25 -15.06 -0.15 -6.03 16 20 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 22 N -0.92 -25.36 10.16 55.49 0.56 -24.79 16 23 Si 0.91 21.24 29.55 -169.99 -5.02 16.21 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.14 2.69 6.60 -3.61 -0.02 2.66 16 28 C -0.11 -1.66 4.02 -88.60 -0.36 -2.01 16 29 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 30 C 0.12 1.71 6.24 -3.57 -0.02 1.68 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.14 5.95 -51.93 -0.31 0.83 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.20 7.20 -51.93 -0.37 0.83 16 36 H 0.20 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.01 6.94 -51.93 -0.36 0.65 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.59 5.90 -51.93 -0.31 1.28 16 43 H 0.06 0.92 7.66 -51.93 -0.40 0.52 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 2.38 6.00 -51.93 -0.31 2.06 16 46 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 47 H 0.02 0.47 7.29 -51.93 -0.38 0.10 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.07 1.03 7.44 -51.93 -0.39 0.64 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -30.00 394.18 -10.94 -40.94 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.87 Total: 2.66 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -3.31 Total: 7.24 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -0.77 Total: -63.47 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.00 -10.94 -40.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049067723.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.377 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds