Wall clock time and date at job start Wed Apr 1 2020 03:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46830 * 2 1 4 4 N 1.32149 * 120.54224 * 268.10478 * 3 2 1 5 5 C 1.31869 * 120.96889 * 180.29054 * 4 3 2 6 6 N 1.31865 * 122.09216 * 359.74627 * 5 4 3 7 7 C 1.32147 * 120.97400 * 359.97438 * 6 5 4 8 8 C 1.50693 * 120.54303 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.46926 * 275.12235 * 8 7 6 10 10 C 1.39949 * 120.53441 * 87.86695 * 3 2 1 11 11 C 1.47836 * 120.94208 * 359.97061 * 10 3 2 12 12 O 1.21548 * 119.99614 * 85.06447 * 11 10 3 13 13 N 1.34777 * 119.99844 * 265.07179 * 11 10 3 14 14 C 1.46766 * 125.34190 * 354.94424 * 13 11 10 15 15 C 1.53967 * 106.62915 * 198.51913 * 14 13 11 16 16 H 1.08993 * 113.60997 * 94.61661 * 15 14 13 17 17 C 1.53931 * 109.25086 * 221.81271 * 15 14 13 18 18 N 1.46741 * 106.72121 * 81.63602 * 17 15 14 19 19 C 1.36939 * 125.33037 * 198.32237 * 18 17 15 20 20 H 1.08002 * 119.99937 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00052 * 0.02562 * 19 18 17 22 22 N 1.31623 * 119.99881 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00246 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46990 * 60.00494 * 23 21 19 25 25 H 1.48499 * 109.47094 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47538 * 300.00773 * 23 21 19 27 27 C 1.46642 * 109.34421 * 18.33616 * 18 17 15 28 28 C 1.53690 * 108.00714 * 359.16686 * 27 18 17 29 29 H 1.09003 * 112.56338 * 105.90601 * 28 27 18 30 30 C 1.46676 * 125.33354 * 174.94613 * 13 11 10 31 31 H 1.09002 * 109.47244 * 56.05764 * 1 2 3 32 32 H 1.09006 * 109.46962 * 176.05151 * 1 2 3 33 33 H 1.08994 * 109.47351 * 296.05244 * 1 2 3 34 34 H 1.09000 * 109.46725 * 240.00486 * 2 1 3 35 35 H 1.08997 * 109.47493 * 120.00652 * 2 1 3 36 36 H 1.07996 * 118.95528 * 179.72221 * 5 4 3 37 37 H 1.08997 * 109.47500 * 35.11926 * 8 7 6 38 38 H 1.09000 * 109.47353 * 155.12667 * 8 7 6 39 39 H 1.08996 * 109.47153 * 61.11600 * 9 8 7 40 40 H 1.09004 * 109.47053 * 181.10879 * 9 8 7 41 41 H 1.08996 * 109.47200 * 301.11063 * 9 8 7 42 42 H 1.09000 * 110.02898 * 79.22731 * 14 13 11 43 43 H 1.08999 * 110.02977 * 317.81479 * 14 13 11 44 44 H 1.09003 * 110.00898 * 200.94676 * 17 15 14 45 45 H 1.08997 * 110.01304 * 322.31837 * 17 15 14 46 46 H 0.97004 * 119.99955 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.76601 * 239.52768 * 27 18 17 48 48 H 1.09000 * 109.76157 * 118.80623 * 27 18 17 49 49 H 1.09003 * 109.76720 * 59.83602 * 30 13 11 50 50 H 1.08995 * 109.77088 * 299.07656 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2916 2.0414 -1.1375 5 6 2.7368 3.2827 -1.1471 6 7 2.9393 3.9629 -0.0358 7 6 2.7009 3.4217 1.1459 8 6 2.9364 4.2078 2.4098 9 6 4.4063 4.0892 2.8178 10 6 2.2269 2.1061 1.2046 11 6 1.9455 1.4569 2.5026 12 8 2.7927 0.7647 3.0322 13 7 0.7494 1.6324 3.0985 14 6 -0.3152 2.5220 2.6197 15 6 -1.2588 2.7616 3.8126 16 1 -1.0319 3.6682 4.3734 17 6 -2.7177 2.7051 3.3249 18 7 -3.0835 1.2859 3.2512 19 6 -4.1394 0.7760 2.5439 20 1 -4.3306 -0.2870 2.5502 21 6 -4.9640 1.6252 1.8188 22 7 -4.7306 2.9206 1.8108 23 14 -6.4047 0.9298 0.8545 24 1 -7.3326 0.2353 1.7829 25 1 -7.1229 2.0355 0.1713 26 1 -5.9037 -0.0344 -0.1576 27 6 -2.1416 0.4992 4.0539 28 6 -1.1082 1.4647 4.6556 29 1 -1.2648 1.6341 5.7209 30 6 0.3077 0.9642 4.3272 31 1 -0.3634 0.5738 -0.8526 32 1 -0.3633 -1.0253 -0.0708 33 1 -0.3634 0.4513 0.9232 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.9424 3.7570 -2.0953 37 1 2.6907 5.2556 2.2371 38 1 2.3054 3.8130 3.2061 39 1 5.0364 4.5020 2.0300 40 1 4.5723 4.6416 3.7427 41 1 4.6572 3.0397 2.9713 42 1 -0.8592 2.0474 1.8030 43 1 0.1109 3.4678 2.2850 44 1 -3.3675 3.2214 4.0316 45 1 -2.7996 3.1630 2.3392 46 1 -5.3066 3.5140 1.3038 47 1 -1.6383 -0.2314 3.4206 48 1 -2.6769 -0.0128 4.8535 49 1 0.9849 1.2110 5.1449 50 1 0.2913 -0.1149 4.1746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049067723.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:57 Heat of formation + Delta-G solvation = 18.368141 kcal Electronic energy + Delta-G solvation = -32337.532598 eV Core-core repulsion = 28364.512461 eV Total energy + Delta-G solvation = -3973.020137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.67318 -41.31501 -39.60286 -36.86216 -36.62155 -35.41246 -34.07796 -32.66784 -32.05829 -31.62549 -31.13269 -27.61192 -27.16220 -26.44528 -26.31678 -24.59016 -24.00287 -21.97328 -21.83475 -21.05565 -20.84445 -19.25347 -18.97659 -18.37352 -17.57967 -17.37826 -16.90376 -16.63124 -16.21021 -15.74392 -15.54053 -15.42768 -15.14567 -14.91776 -14.77140 -14.66754 -14.44496 -14.13962 -13.93528 -13.67932 -13.59108 -13.35536 -13.25675 -13.18632 -12.86565 -12.74513 -12.69143 -12.67143 -12.62999 -12.14686 -12.10946 -12.02581 -11.87039 -11.74133 -11.57664 -11.47882 -11.39238 -11.14754 -10.68231 -10.61557 -10.43141 -9.77790 -8.83891 -7.78532 -5.17614 -0.47774 -0.18362 1.23300 1.48016 1.48793 1.55107 1.79622 2.49494 2.50664 2.81322 2.88318 3.06962 3.14553 3.34597 3.49438 3.61473 3.71845 3.80171 3.93258 3.95230 4.04159 4.13741 4.15538 4.16211 4.22046 4.25564 4.34596 4.47389 4.51667 4.56224 4.66220 4.72689 4.81019 4.83897 4.88521 4.89182 4.92704 4.97002 5.02879 5.09346 5.12934 5.16842 5.22797 5.27883 5.34317 5.50087 5.61236 5.76073 5.83271 6.26882 6.30635 6.84214 6.88427 7.15317 7.83117 8.43414 9.25566 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.004048 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.155506 B = 6914.910784 C = 7667.547892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 C 0.210 3.790 4 N -0.533 5.533 5 C 0.310 3.690 6 N -0.527 5.527 7 C 0.212 3.788 8 C -0.083 4.083 9 C -0.136 4.136 10 C -0.241 4.241 11 C 0.598 3.402 12 O -0.558 6.558 13 N -0.594 5.594 14 C 0.123 3.877 15 C -0.109 4.109 16 H 0.120 0.880 17 C 0.179 3.821 18 N -0.618 5.618 19 C -0.235 4.235 20 H 0.077 0.923 21 C -0.056 4.056 22 N -0.945 5.945 23 Si 0.968 3.032 24 H -0.280 1.280 25 H -0.295 1.295 26 H -0.280 1.280 27 C 0.138 3.862 28 C -0.093 4.093 29 H 0.127 0.873 30 C 0.121 3.879 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.236 0.764 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.072 0.928 44 H -0.006 1.006 45 H 0.062 0.938 46 H 0.246 0.754 47 H 0.021 0.979 48 H 0.027 0.973 49 H 0.089 0.911 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.048 1.739 1.118 16.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 C 0.064 3.936 4 N -0.247 5.247 5 C 0.023 3.977 6 N -0.241 5.241 7 C 0.065 3.935 8 C -0.121 4.121 9 C -0.194 4.194 10 C -0.248 4.248 11 C 0.385 3.615 12 O -0.437 6.437 13 N -0.325 5.325 14 C 0.000 4.000 15 C -0.129 4.129 16 H 0.138 0.862 17 C 0.054 3.946 18 N -0.344 5.344 19 C -0.364 4.364 20 H 0.095 0.905 21 C -0.250 4.250 22 N -0.594 5.594 23 Si 0.797 3.203 24 H -0.206 1.206 25 H -0.221 1.221 26 H -0.206 1.206 27 C 0.013 3.987 28 C -0.112 4.112 29 H 0.145 0.855 30 C 0.000 4.000 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.252 0.748 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.012 0.988 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.039 0.961 48 H 0.045 0.955 49 H 0.108 0.892 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.578 1.847 0.356 16.684 hybrid contribution -1.479 -0.709 -0.088 1.642 sum 15.099 1.138 0.268 15.145 Atomic orbital electron populations 1.21675 0.92805 1.03385 1.01807 1.20656 0.96919 0.89077 1.04826 1.22018 0.87781 0.96908 0.86896 1.68352 1.15084 1.12167 1.29115 1.25879 0.87386 0.86289 0.98129 1.68355 1.18999 1.38268 0.98516 1.22180 0.86832 0.89037 0.95478 1.20769 0.99831 1.01029 0.90432 1.21637 0.92990 1.01885 1.02865 1.21401 1.09588 0.98232 0.95607 1.17318 0.80630 0.80128 0.83425 1.90774 1.45979 1.41347 1.65645 1.48241 1.14011 1.43648 1.26612 1.21956 0.87509 0.93032 0.97496 1.23120 0.95613 0.99013 0.95126 0.86195 1.21110 0.88939 0.85181 0.99413 1.44430 1.31015 1.03306 1.55613 1.19294 1.03246 0.92508 1.21370 0.90529 1.25435 1.01761 0.95852 1.01916 1.70062 1.40496 1.02507 1.46377 0.85309 0.79571 0.76806 0.78612 1.20646 1.22142 1.20621 1.21387 0.90542 0.93677 0.93094 1.22763 0.92574 0.94538 1.01301 0.85518 1.21897 0.94778 0.97090 0.86272 0.92850 0.90153 0.93626 0.87468 0.90120 0.74781 0.87255 0.90073 0.91747 0.89186 0.93966 0.92965 0.90970 0.98843 0.91986 0.94434 0.96130 0.95544 0.89235 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 9.89 71.98 0.71 -3.37 16 2 C -0.08 -2.07 5.87 29.85 0.18 -1.89 16 3 C 0.21 6.13 6.12 42.93 0.26 6.39 16 4 N -0.53 -14.58 10.36 -187.06 -1.94 -16.52 16 5 C 0.31 7.23 12.27 180.84 2.22 9.44 16 6 N -0.53 -13.28 10.36 -187.07 -1.94 -15.22 16 7 C 0.21 5.56 5.86 42.93 0.25 5.81 16 8 C -0.08 -1.74 6.00 29.85 0.18 -1.57 16 9 C -0.14 -2.54 9.90 71.98 0.71 -1.83 16 10 C -0.24 -7.04 4.70 -19.91 -0.09 -7.14 16 11 C 0.60 18.27 4.53 86.78 0.39 18.66 16 12 O -0.56 -19.52 17.34 -3.87 -0.07 -19.59 16 13 N -0.59 -17.15 3.11 -820.82 -2.55 -19.70 16 14 C 0.12 3.84 5.61 86.66 0.49 4.33 16 15 C -0.11 -3.42 4.17 -9.32 -0.04 -3.46 16 16 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 17 C 0.18 7.92 4.81 86.65 0.42 8.34 16 18 N -0.62 -29.16 3.37 -697.87 -2.35 -31.51 16 19 C -0.24 -12.47 10.25 84.03 0.86 -11.61 16 20 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 21 C -0.06 -3.06 5.48 84.86 0.47 -2.59 16 22 N -0.94 -53.54 10.16 21.65 0.22 -53.32 16 23 Si 0.97 44.30 29.55 68.60 2.03 46.32 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 27 C 0.14 5.13 6.60 86.58 0.57 5.70 16 28 C -0.09 -2.62 4.02 -9.49 -0.04 -2.66 16 29 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 30 C 0.12 3.19 6.24 86.59 0.54 3.73 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.04 1.55 5.95 -2.39 -0.01 1.54 16 34 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.08 2.25 7.20 -2.39 -0.02 2.23 16 36 H 0.24 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.08 1.77 6.94 -2.39 -0.02 1.75 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.05 2.02 5.90 -2.39 -0.01 2.00 16 43 H 0.07 2.10 7.66 -2.39 -0.02 2.08 16 44 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.06 3.18 6.00 -2.39 -0.01 3.17 16 46 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 47 H 0.02 0.79 7.29 -2.39 -0.02 0.77 16 48 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 50 H 0.07 1.88 7.44 -2.39 -0.02 1.86 16 Total: -1.00 -66.35 394.18 2.41 -63.94 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.94 Total: 19.31 kcal Atomic # 6 Polarization: 18.21 SS G_CDS: 8.08 Total: 26.28 kcal Atomic # 7 Polarization: -127.71 SS G_CDS: -8.56 Total: -136.27 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.07 Total: -19.59 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -66.35 2.41 -63.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049067723.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.306 kcal (2) G-P(sol) polarization free energy of solvation -66.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds