Wall clock time and date at job start Wed Apr 1 2020 03:06:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.31886 * 118.95163 * 2 1
4 4 C 1.32134 * 120.96467 * 179.97438 * 3 2 1
5 5 C 1.39966 * 118.92124 * 0.02562 * 4 3 2
6 6 C 1.47836 * 120.93831 * 179.97438 * 5 4 3
7 7 O 1.21550 * 120.00098 * 133.99634 * 6 5 4
8 8 N 1.34780 * 120.00061 * 313.99722 * 6 5 4
9 9 C 1.46654 * 125.33483 * 175.02443 * 8 6 5
10 10 C 1.53678 * 107.96880 * 179.29164 * 9 8 6
11 11 H 1.08999 * 113.31962 * 106.33457 * 10 9 8
12 12 C 1.53982 * 109.29378 * 233.06004 * 10 9 8
13 13 N 1.46753 * 106.67659 * 82.34425 * 12 10 9
14 14 C 1.36944 * 125.33464 * 198.42719 * 13 12 10
15 15 H 1.07996 * 119.99806 * 180.02562 * 14 13 12
16 16 C 1.38807 * 119.99951 * 0.02562 * 14 13 12
17 17 N 1.31625 * 120.00107 * 0.02562 * 16 14 13
18 18 Si 1.86796 * 119.99979 * 179.97438 * 16 14 13
19 19 H 1.48500 * 109.47180 * 90.00550 * 18 16 14
20 20 H 1.48505 * 109.47046 * 210.00439 * 18 16 14
21 21 H 1.48502 * 109.47240 * 330.00480 * 18 16 14
22 22 C 1.46662 * 109.33322 * 18.44815 * 13 12 10
23 23 C 1.53680 * 107.96653 * 359.29003 * 22 13 12
24 24 H 1.09001 * 112.77031 * 106.02098 * 23 22 13
25 25 C 1.46757 * 125.33321 * 355.02592 * 8 6 5
26 26 C 1.39929 * 118.12351 * 0.26764 * 5 4 3
27 27 C 1.50700 * 120.53650 * 179.72968 * 26 5 4
28 28 C 1.52999 * 109.47161 * 124.17975 * 27 26 5
29 29 C 1.52999 * 109.46789 * 244.17889 * 27 26 5
30 30 N 1.31854 * 118.94888 * 179.97438 * 2 1 3
31 31 H 1.08999 * 109.47273 * 89.99189 * 1 2 3
32 32 H 1.09000 * 109.47440 * 209.99874 * 1 2 3
33 33 H 1.09002 * 109.47221 * 330.00057 * 1 2 3
34 34 H 1.08003 * 120.53777 * 179.97438 * 4 3 2
35 35 H 1.08997 * 109.77159 * 59.66223 * 9 8 6
36 36 H 1.08999 * 109.76848 * 298.91935 * 9 8 6
37 37 H 1.08995 * 110.01988 * 323.03957 * 12 10 9
38 38 H 1.09000 * 110.01658 * 201.65049 * 12 10 9
39 39 H 0.96997 * 119.99756 * 179.97438 * 17 16 14
40 40 H 1.08997 * 109.76738 * 239.66607 * 22 13 12
41 41 H 1.09000 * 109.76826 * 118.91682 * 22 13 12
42 42 H 1.08998 * 110.02190 * 79.14294 * 25 8 6
43 43 H 1.09004 * 110.01721 * 317.75237 * 25 8 6
44 44 H 1.08999 * 109.47684 * 4.17591 * 27 26 5
45 45 H 1.09000 * 109.47137 * 59.99837 * 28 27 26
46 46 H 1.09001 * 109.46737 * 179.97438 * 28 27 26
47 47 H 1.08996 * 109.47194 * 299.99505 * 28 27 26
48 48 H 1.09003 * 109.47227 * 60.00021 * 29 27 26
49 49 H 1.09003 * 109.47053 * 180.02562 * 29 27 26
50 50 H 1.09000 * 109.47219 * 299.99985 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1454 1.1540 0.0000
4 6 3.4659 1.2005 0.0005
5 6 4.1854 -0.0001 0.0005
6 6 5.6638 -0.0002 0.0005
7 8 6.2715 -0.7314 0.7577
8 7 6.3378 0.8105 -0.8392
9 6 7.7941 0.9813 -0.8668
10 6 8.1331 1.9801 -1.9844
11 1 8.4289 2.9608 -1.6116
12 6 9.1832 1.3568 -2.9225
13 7 8.4522 0.4972 -3.8608
14 6 9.0065 -0.5012 -4.6166
15 1 8.3857 -1.0827 -5.2820
16 6 10.3662 -0.7657 -4.5275
17 7 11.1228 -0.0572 -3.7162
18 14 11.1222 -2.1280 -5.5580
19 1 11.5683 -1.5734 -6.8613
20 1 12.2879 -2.7032 -4.8398
21 1 10.1115 -3.1906 -5.7921
22 6 7.0351 0.8752 -3.8626
23 6 6.8500 2.0251 -2.8600
24 1 6.6999 2.9889 -3.3465
25 6 5.7293 1.6607 -1.8691
26 6 3.4660 -1.2003 -0.0058
27 6 4.1856 -2.5244 -0.0123
28 6 3.7167 -3.3654 1.1767
29 6 3.8774 -3.2658 -1.3146
30 7 2.1452 -1.1538 0.0005
31 1 -0.3634 0.0001 -1.0276
32 1 -0.3634 -0.8900 0.5138
33 1 -0.3634 0.8900 0.5138
34 1 3.9817 2.1494 0.0001
35 1 8.2738 0.0239 -1.0700
36 1 8.1379 1.3700 0.0917
37 1 9.8920 0.7622 -2.3464
38 1 9.7092 2.1409 -3.4671
39 1 12.0728 -0.2424 -3.6537
40 1 6.4259 0.0227 -3.5624
41 1 6.7428 1.2047 -4.8596
42 1 5.3241 2.5650 -1.4150
43 1 4.9387 1.1150 -2.3841
44 1 5.2596 -2.3547 0.0638
45 1 2.6427 -3.5352 1.1006
46 1 4.2368 -4.3233 1.1717
47 1 3.9362 -2.8372 2.1045
48 1 4.2115 -2.6666 -2.1617
49 1 4.3975 -4.2238 -1.3191
50 1 2.8034 -3.4356 -1.3907
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049095304.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:06:08
Heat of formation + Delta-G solvation = 39.608969 kcal
Electronic energy + Delta-G solvation = -31520.623488 eV
Core-core repulsion = 27548.524422 eV
Total energy + Delta-G solvation = -3972.099066 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.62885 -40.07017 -38.27271 -36.25521 -35.03081 -33.74461 -32.47882 -32.12612
-30.38506 -29.77368 -28.95757 -27.18351 -25.75384 -25.62798 -24.97670 -23.88843
-22.65790 -20.83070 -20.15514 -19.79584 -19.48127 -18.08331 -17.41550 -16.62597
-16.28817 -16.01942 -15.67701 -15.34820 -15.00765 -14.74615 -14.11971 -14.01118
-13.75696 -13.50886 -13.46280 -13.24805 -13.07733 -12.81520 -12.70593 -12.64270
-12.25125 -12.20102 -12.02220 -11.74697 -11.67451 -11.61876 -11.43480 -11.38580
-11.04170 -10.90115 -10.82638 -10.68899 -10.49842 -10.15286 -10.06205 -9.92779
-9.77374 -9.66290 -9.52634 -9.43966 -8.68353 -8.44473 -6.88529 -5.73071
-3.11652 0.37077 0.82914 2.62203 3.00698 3.37761 3.43238 3.44990
3.48484 3.62344 3.78969 4.11088 4.34962 4.44388 4.68297 4.69537
4.83087 4.97678 5.03377 5.07855 5.11087 5.16043 5.24706 5.34075
5.38216 5.46018 5.53547 5.56509 5.62684 5.63223 5.64253 5.72496
5.79877 5.84118 5.86460 5.97608 6.04777 6.11001 6.18406 6.23676
6.30142 6.32858 6.45516 6.58786 6.66455 6.72075 6.75232 7.38396
7.55947 7.58887 7.76909 7.82689 8.12956 8.27347 9.17804 9.78093
10.40524 11.33604
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.013753 B = 0.003341 C = 0.003040
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2035.442028 B = 8377.989162 C = 9209.698235
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.086 4.086
2 C 0.329 3.671
3 N -0.525 5.525
4 C 0.186 3.814
5 C -0.235 4.235
6 C 0.582 3.418
7 O -0.526 6.526
8 N -0.597 5.597
9 C 0.122 3.878
10 C -0.123 4.123
11 H 0.090 0.910
12 C 0.169 3.831
13 N -0.599 5.599
14 C -0.226 4.226
15 H 0.077 0.923
16 C -0.008 4.008
17 N -0.922 5.922
18 Si 0.913 3.087
19 H -0.289 1.289
20 H -0.290 1.290
21 H -0.281 1.281
22 C 0.145 3.855
23 C -0.108 4.108
24 H 0.099 0.901
25 C 0.108 3.892
26 C 0.241 3.759
27 C -0.066 4.066
28 C -0.132 4.132
29 C -0.139 4.139
30 N -0.514 5.514
31 H 0.088 0.912
32 H 0.087 0.913
33 H 0.087 0.913
34 H 0.173 0.827
35 H 0.084 0.916
36 H 0.062 0.938
37 H 0.098 0.902
38 H 0.020 0.980
39 H 0.253 0.747
40 H 0.021 0.979
41 H 0.022 0.978
42 H 0.064 0.936
43 H 0.069 0.931
44 H 0.112 0.888
45 H 0.063 0.937
46 H 0.064 0.936
47 H 0.053 0.947
48 H 0.054 0.946
49 H 0.067 0.933
50 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.203 2.885 8.071 20.120
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.063 3.937
3 N -0.239 5.239
4 C 0.019 3.981
5 C -0.243 4.243
6 C 0.368 3.632
7 O -0.403 6.403
8 N -0.330 5.330
9 C 0.001 3.999
10 C -0.143 4.143
11 H 0.108 0.892
12 C 0.044 3.956
13 N -0.325 5.325
14 C -0.354 4.354
15 H 0.095 0.905
16 C -0.203 4.203
17 N -0.570 5.570
18 Si 0.744 3.256
19 H -0.216 1.216
20 H -0.216 1.216
21 H -0.207 1.207
22 C 0.018 3.982
23 C -0.128 4.128
24 H 0.118 0.882
25 C -0.016 4.016
26 C 0.094 3.906
27 C -0.085 4.085
28 C -0.190 4.190
29 C -0.197 4.197
30 N -0.228 5.228
31 H 0.107 0.893
32 H 0.105 0.895
33 H 0.105 0.895
34 H 0.190 0.810
35 H 0.102 0.898
36 H 0.080 0.920
37 H 0.116 0.884
38 H 0.038 0.962
39 H 0.064 0.936
40 H 0.039 0.961
41 H 0.040 0.960
42 H 0.082 0.918
43 H 0.087 0.913
44 H 0.130 0.870
45 H 0.082 0.918
46 H 0.083 0.917
47 H 0.072 0.928
48 H 0.073 0.927
49 H 0.086 0.914
50 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -18.716 2.337 8.491 20.684
hybrid contribution 1.364 -0.384 -0.690 1.576
sum -17.352 1.953 7.802 19.125
Atomic orbital electron populations
1.20605 0.85427 1.04288 1.04090 1.23465 0.98366 0.83396 0.88442
1.68290 1.09502 1.30106 1.16001 1.23465 0.89431 0.97628 0.87562
1.21579 0.96101 0.96484 1.10125 1.17338 0.85485 0.79799 0.80553
1.90776 1.69227 1.39571 1.40736 1.48157 1.08676 1.42251 1.33878
1.21942 0.78521 1.01101 0.98380 1.23222 0.97448 0.98204 0.95445
0.89174 1.21484 0.91231 0.93016 0.89835 1.44193 1.01665 1.38525
1.48152 1.19031 0.91606 1.07986 1.16773 0.90534 1.24772 0.96102
0.99627 0.99838 1.69845 1.05224 1.41844 1.40068 0.86091 0.78804
0.81325 0.79386 1.21605 1.21586 1.20699 1.21128 0.88393 0.93299
0.95344 1.22842 0.94011 1.00032 0.95902 0.88236 1.22104 0.96608
0.93724 0.89126 1.21830 0.88822 0.94875 0.85068 1.20543 1.01202
0.89260 0.97476 1.21681 1.01681 0.99206 0.96412 1.21779 1.02235
1.00277 0.95413 1.68124 1.09021 1.29904 1.15759 0.89329 0.89460
0.89467 0.81014 0.89764 0.92011 0.88415 0.96172 0.93641 0.96119
0.95989 0.91753 0.91255 0.86978 0.91812 0.91731 0.92763 0.92683
0.91407 0.91841
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.65 10.31 36.01 0.37 -0.28 16
2 C 0.33 3.84 7.64 -157.07 -1.20 2.64 16
3 N -0.52 -6.36 10.32 -10.39 -0.11 -6.46 16
4 C 0.19 2.24 9.82 -16.77 -0.16 2.08 16
5 C -0.24 -3.32 5.21 -104.69 -0.55 -3.87 16
6 C 0.58 9.49 6.84 -12.33 -0.08 9.40 16
7 O -0.53 -10.10 15.21 5.32 0.08 -10.02 16
8 N -0.60 -9.33 3.31 -173.46 -0.57 -9.90 16
9 C 0.12 2.11 6.24 -3.61 -0.02 2.09 16
10 C -0.12 -2.08 4.09 -88.48 -0.36 -2.44 16
11 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16
12 C 0.17 3.84 4.84 -3.39 -0.02 3.82 16
13 N -0.60 -14.63 3.38 -171.89 -0.58 -15.21 16
14 C -0.23 -6.15 10.25 -15.06 -0.15 -6.30 16
15 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16
16 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16
17 N -0.92 -26.15 10.16 55.49 0.56 -25.58 16
18 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16
19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
22 C 0.14 2.85 6.63 -3.60 -0.02 2.82 16
23 C -0.11 -1.66 4.09 -88.48 -0.36 -2.02 16
24 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16
25 C 0.11 1.41 4.67 -3.39 -0.02 1.40 16
26 C 0.24 3.37 5.51 -81.82 -0.45 2.92 16
27 C -0.07 -0.90 2.96 -91.77 -0.27 -1.17 16
28 C -0.13 -1.55 9.07 37.16 0.34 -1.21 16
29 C -0.14 -1.72 9.14 37.16 0.34 -1.38 16
30 N -0.51 -6.64 9.90 -6.67 -0.07 -6.70 16
31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16
33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
34 H 0.17 1.66 6.62 -52.48 -0.35 1.31 16
35 H 0.08 1.79 7.47 -51.93 -0.39 1.40 16
36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
37 H 0.10 2.52 5.83 -51.93 -0.30 2.22 16
38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16
39 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16
40 H 0.02 0.43 7.47 -51.93 -0.39 0.04 16
41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
42 H 0.06 0.66 6.95 -51.93 -0.36 0.29 16
43 H 0.07 0.91 7.46 -51.93 -0.39 0.52 16
44 H 0.11 1.81 5.23 -51.93 -0.27 1.54 16
45 H 0.06 0.70 7.99 -51.93 -0.42 0.29 16
46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
48 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16
49 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
LS Contribution 392.94 15.07 5.92 5.92
Total: -1.00 -31.60 392.94 -10.41 -42.01
By element:
Atomic # 1 Polarization: 8.81 SS G_CDS: -7.90 Total: 0.90 kcal
Atomic # 6 Polarization: 10.92 SS G_CDS: -2.72 Total: 8.20 kcal
Atomic # 7 Polarization: -63.10 SS G_CDS: -0.76 Total: -63.86 kcal
Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal
Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -31.60 -10.41 -42.01 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049095304.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.615 kcal
(2) G-P(sol) polarization free energy of solvation -31.598 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.017 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.609 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds