Wall clock time and date at job start Wed Apr 1 2020 03:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31886 * 118.95163 * 2 1 4 4 C 1.32134 * 120.96467 * 179.97438 * 3 2 1 5 5 C 1.39966 * 118.92124 * 0.02562 * 4 3 2 6 6 C 1.47836 * 120.93831 * 179.97438 * 5 4 3 7 7 O 1.21550 * 120.00098 * 133.99634 * 6 5 4 8 8 N 1.34780 * 120.00061 * 313.99722 * 6 5 4 9 9 C 1.46654 * 125.33483 * 175.02443 * 8 6 5 10 10 C 1.53678 * 107.96880 * 179.29164 * 9 8 6 11 11 H 1.08999 * 113.31962 * 106.33457 * 10 9 8 12 12 C 1.53982 * 109.29378 * 233.06004 * 10 9 8 13 13 N 1.46753 * 106.67659 * 82.34425 * 12 10 9 14 14 C 1.36944 * 125.33464 * 198.42719 * 13 12 10 15 15 H 1.07996 * 119.99806 * 180.02562 * 14 13 12 16 16 C 1.38807 * 119.99951 * 0.02562 * 14 13 12 17 17 N 1.31625 * 120.00107 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99979 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47180 * 90.00550 * 18 16 14 20 20 H 1.48505 * 109.47046 * 210.00439 * 18 16 14 21 21 H 1.48502 * 109.47240 * 330.00480 * 18 16 14 22 22 C 1.46662 * 109.33322 * 18.44815 * 13 12 10 23 23 C 1.53680 * 107.96653 * 359.29003 * 22 13 12 24 24 H 1.09001 * 112.77031 * 106.02098 * 23 22 13 25 25 C 1.46757 * 125.33321 * 355.02592 * 8 6 5 26 26 C 1.39929 * 118.12351 * 0.26764 * 5 4 3 27 27 C 1.50700 * 120.53650 * 179.72968 * 26 5 4 28 28 C 1.52999 * 109.47161 * 124.17975 * 27 26 5 29 29 C 1.52999 * 109.46789 * 244.17889 * 27 26 5 30 30 N 1.31854 * 118.94888 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47273 * 89.99189 * 1 2 3 32 32 H 1.09000 * 109.47440 * 209.99874 * 1 2 3 33 33 H 1.09002 * 109.47221 * 330.00057 * 1 2 3 34 34 H 1.08003 * 120.53777 * 179.97438 * 4 3 2 35 35 H 1.08997 * 109.77159 * 59.66223 * 9 8 6 36 36 H 1.08999 * 109.76848 * 298.91935 * 9 8 6 37 37 H 1.08995 * 110.01988 * 323.03957 * 12 10 9 38 38 H 1.09000 * 110.01658 * 201.65049 * 12 10 9 39 39 H 0.96997 * 119.99756 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.76738 * 239.66607 * 22 13 12 41 41 H 1.09000 * 109.76826 * 118.91682 * 22 13 12 42 42 H 1.08998 * 110.02190 * 79.14294 * 25 8 6 43 43 H 1.09004 * 110.01721 * 317.75237 * 25 8 6 44 44 H 1.08999 * 109.47684 * 4.17591 * 27 26 5 45 45 H 1.09000 * 109.47137 * 59.99837 * 28 27 26 46 46 H 1.09001 * 109.46737 * 179.97438 * 28 27 26 47 47 H 1.08996 * 109.47194 * 299.99505 * 28 27 26 48 48 H 1.09003 * 109.47227 * 60.00021 * 29 27 26 49 49 H 1.09003 * 109.47053 * 180.02562 * 29 27 26 50 50 H 1.09000 * 109.47219 * 299.99985 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2005 0.0005 5 6 4.1854 -0.0001 0.0005 6 6 5.6638 -0.0002 0.0005 7 8 6.2715 -0.7314 0.7577 8 7 6.3378 0.8105 -0.8392 9 6 7.7941 0.9813 -0.8668 10 6 8.1331 1.9801 -1.9844 11 1 8.4289 2.9608 -1.6116 12 6 9.1832 1.3568 -2.9225 13 7 8.4522 0.4972 -3.8608 14 6 9.0065 -0.5012 -4.6166 15 1 8.3857 -1.0827 -5.2820 16 6 10.3662 -0.7657 -4.5275 17 7 11.1228 -0.0572 -3.7162 18 14 11.1222 -2.1280 -5.5580 19 1 11.5683 -1.5734 -6.8613 20 1 12.2879 -2.7032 -4.8398 21 1 10.1115 -3.1906 -5.7921 22 6 7.0351 0.8752 -3.8626 23 6 6.8500 2.0251 -2.8600 24 1 6.6999 2.9889 -3.3465 25 6 5.7293 1.6607 -1.8691 26 6 3.4660 -1.2003 -0.0058 27 6 4.1856 -2.5244 -0.0123 28 6 3.7167 -3.3654 1.1767 29 6 3.8774 -3.2658 -1.3146 30 7 2.1452 -1.1538 0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 3.9817 2.1494 0.0001 35 1 8.2738 0.0239 -1.0700 36 1 8.1379 1.3700 0.0917 37 1 9.8920 0.7622 -2.3464 38 1 9.7092 2.1409 -3.4671 39 1 12.0728 -0.2424 -3.6537 40 1 6.4259 0.0227 -3.5624 41 1 6.7428 1.2047 -4.8596 42 1 5.3241 2.5650 -1.4150 43 1 4.9387 1.1150 -2.3841 44 1 5.2596 -2.3547 0.0638 45 1 2.6427 -3.5352 1.1006 46 1 4.2368 -4.3233 1.1717 47 1 3.9362 -2.8372 2.1045 48 1 4.2115 -2.6666 -2.1617 49 1 4.3975 -4.2238 -1.3191 50 1 2.8034 -3.4356 -1.3907 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049095304.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:08 Heat of formation + Delta-G solvation = 39.608969 kcal Electronic energy + Delta-G solvation = -31520.623488 eV Core-core repulsion = 27548.524422 eV Total energy + Delta-G solvation = -3972.099066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.62885 -40.07017 -38.27271 -36.25521 -35.03081 -33.74461 -32.47882 -32.12612 -30.38506 -29.77368 -28.95757 -27.18351 -25.75384 -25.62798 -24.97670 -23.88843 -22.65790 -20.83070 -20.15514 -19.79584 -19.48127 -18.08331 -17.41550 -16.62597 -16.28817 -16.01942 -15.67701 -15.34820 -15.00765 -14.74615 -14.11971 -14.01118 -13.75696 -13.50886 -13.46280 -13.24805 -13.07733 -12.81520 -12.70593 -12.64270 -12.25125 -12.20102 -12.02220 -11.74697 -11.67451 -11.61876 -11.43480 -11.38580 -11.04170 -10.90115 -10.82638 -10.68899 -10.49842 -10.15286 -10.06205 -9.92779 -9.77374 -9.66290 -9.52634 -9.43966 -8.68353 -8.44473 -6.88529 -5.73071 -3.11652 0.37077 0.82914 2.62203 3.00698 3.37761 3.43238 3.44990 3.48484 3.62344 3.78969 4.11088 4.34962 4.44388 4.68297 4.69537 4.83087 4.97678 5.03377 5.07855 5.11087 5.16043 5.24706 5.34075 5.38216 5.46018 5.53547 5.56509 5.62684 5.63223 5.64253 5.72496 5.79877 5.84118 5.86460 5.97608 6.04777 6.11001 6.18406 6.23676 6.30142 6.32858 6.45516 6.58786 6.66455 6.72075 6.75232 7.38396 7.55947 7.58887 7.76909 7.82689 8.12956 8.27347 9.17804 9.78093 10.40524 11.33604 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013753 B = 0.003341 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.442028 B = 8377.989162 C = 9209.698235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.329 3.671 3 N -0.525 5.525 4 C 0.186 3.814 5 C -0.235 4.235 6 C 0.582 3.418 7 O -0.526 6.526 8 N -0.597 5.597 9 C 0.122 3.878 10 C -0.123 4.123 11 H 0.090 0.910 12 C 0.169 3.831 13 N -0.599 5.599 14 C -0.226 4.226 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.913 3.087 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.145 3.855 23 C -0.108 4.108 24 H 0.099 0.901 25 C 0.108 3.892 26 C 0.241 3.759 27 C -0.066 4.066 28 C -0.132 4.132 29 C -0.139 4.139 30 N -0.514 5.514 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.173 0.827 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.020 0.980 39 H 0.253 0.747 40 H 0.021 0.979 41 H 0.022 0.978 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.067 0.933 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.203 2.885 8.071 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 N -0.239 5.239 4 C 0.019 3.981 5 C -0.243 4.243 6 C 0.368 3.632 7 O -0.403 6.403 8 N -0.330 5.330 9 C 0.001 3.999 10 C -0.143 4.143 11 H 0.108 0.892 12 C 0.044 3.956 13 N -0.325 5.325 14 C -0.354 4.354 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.570 5.570 18 Si 0.744 3.256 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.207 1.207 22 C 0.018 3.982 23 C -0.128 4.128 24 H 0.118 0.882 25 C -0.016 4.016 26 C 0.094 3.906 27 C -0.085 4.085 28 C -0.190 4.190 29 C -0.197 4.197 30 N -0.228 5.228 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.190 0.810 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.130 0.870 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.086 0.914 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.716 2.337 8.491 20.684 hybrid contribution 1.364 -0.384 -0.690 1.576 sum -17.352 1.953 7.802 19.125 Atomic orbital electron populations 1.20605 0.85427 1.04288 1.04090 1.23465 0.98366 0.83396 0.88442 1.68290 1.09502 1.30106 1.16001 1.23465 0.89431 0.97628 0.87562 1.21579 0.96101 0.96484 1.10125 1.17338 0.85485 0.79799 0.80553 1.90776 1.69227 1.39571 1.40736 1.48157 1.08676 1.42251 1.33878 1.21942 0.78521 1.01101 0.98380 1.23222 0.97448 0.98204 0.95445 0.89174 1.21484 0.91231 0.93016 0.89835 1.44193 1.01665 1.38525 1.48152 1.19031 0.91606 1.07986 1.16773 0.90534 1.24772 0.96102 0.99627 0.99838 1.69845 1.05224 1.41844 1.40068 0.86091 0.78804 0.81325 0.79386 1.21605 1.21586 1.20699 1.21128 0.88393 0.93299 0.95344 1.22842 0.94011 1.00032 0.95902 0.88236 1.22104 0.96608 0.93724 0.89126 1.21830 0.88822 0.94875 0.85068 1.20543 1.01202 0.89260 0.97476 1.21681 1.01681 0.99206 0.96412 1.21779 1.02235 1.00277 0.95413 1.68124 1.09021 1.29904 1.15759 0.89329 0.89460 0.89467 0.81014 0.89764 0.92011 0.88415 0.96172 0.93641 0.96119 0.95989 0.91753 0.91255 0.86978 0.91812 0.91731 0.92763 0.92683 0.91407 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 10.31 36.01 0.37 -0.28 16 2 C 0.33 3.84 7.64 -157.07 -1.20 2.64 16 3 N -0.52 -6.36 10.32 -10.39 -0.11 -6.46 16 4 C 0.19 2.24 9.82 -16.77 -0.16 2.08 16 5 C -0.24 -3.32 5.21 -104.69 -0.55 -3.87 16 6 C 0.58 9.49 6.84 -12.33 -0.08 9.40 16 7 O -0.53 -10.10 15.21 5.32 0.08 -10.02 16 8 N -0.60 -9.33 3.31 -173.46 -0.57 -9.90 16 9 C 0.12 2.11 6.24 -3.61 -0.02 2.09 16 10 C -0.12 -2.08 4.09 -88.48 -0.36 -2.44 16 11 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 12 C 0.17 3.84 4.84 -3.39 -0.02 3.82 16 13 N -0.60 -14.63 3.38 -171.89 -0.58 -15.21 16 14 C -0.23 -6.15 10.25 -15.06 -0.15 -6.30 16 15 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 16 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 17 N -0.92 -26.15 10.16 55.49 0.56 -25.58 16 18 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.14 2.85 6.63 -3.60 -0.02 2.82 16 23 C -0.11 -1.66 4.09 -88.48 -0.36 -2.02 16 24 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 25 C 0.11 1.41 4.67 -3.39 -0.02 1.40 16 26 C 0.24 3.37 5.51 -81.82 -0.45 2.92 16 27 C -0.07 -0.90 2.96 -91.77 -0.27 -1.17 16 28 C -0.13 -1.55 9.07 37.16 0.34 -1.21 16 29 C -0.14 -1.72 9.14 37.16 0.34 -1.38 16 30 N -0.51 -6.64 9.90 -6.67 -0.07 -6.70 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.17 1.66 6.62 -52.48 -0.35 1.31 16 35 H 0.08 1.79 7.47 -51.93 -0.39 1.40 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.10 2.52 5.83 -51.93 -0.30 2.22 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.02 0.43 7.47 -51.93 -0.39 0.04 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.66 6.95 -51.93 -0.36 0.29 16 43 H 0.07 0.91 7.46 -51.93 -0.39 0.52 16 44 H 0.11 1.81 5.23 -51.93 -0.27 1.54 16 45 H 0.06 0.70 7.99 -51.93 -0.42 0.29 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -31.60 392.94 -10.41 -42.01 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.90 Total: 0.90 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -2.72 Total: 8.20 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -0.76 Total: -63.86 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.60 -10.41 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049095304.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.615 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds