Wall clock time and date at job start Wed Apr 1 2020 03:06:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.31886 * 118.95163 * 2 1
4 4 C 1.32134 * 120.96467 * 179.97438 * 3 2 1
5 5 C 1.39966 * 118.92124 * 0.02562 * 4 3 2
6 6 C 1.47836 * 120.93831 * 179.97438 * 5 4 3
7 7 O 1.21550 * 120.00098 * 133.99634 * 6 5 4
8 8 N 1.34780 * 120.00061 * 313.99722 * 6 5 4
9 9 C 1.46654 * 125.33483 * 175.02443 * 8 6 5
10 10 C 1.53678 * 107.96880 * 179.29164 * 9 8 6
11 11 H 1.08999 * 113.31962 * 106.33457 * 10 9 8
12 12 C 1.53982 * 109.29378 * 233.06004 * 10 9 8
13 13 N 1.46753 * 106.67659 * 82.34425 * 12 10 9
14 14 C 1.36944 * 125.33464 * 198.42719 * 13 12 10
15 15 H 1.07996 * 119.99806 * 180.02562 * 14 13 12
16 16 C 1.38807 * 119.99951 * 0.02562 * 14 13 12
17 17 N 1.31625 * 120.00107 * 0.02562 * 16 14 13
18 18 Si 1.86796 * 119.99979 * 179.97438 * 16 14 13
19 19 H 1.48500 * 109.47180 * 90.00550 * 18 16 14
20 20 H 1.48505 * 109.47046 * 210.00439 * 18 16 14
21 21 H 1.48502 * 109.47240 * 330.00480 * 18 16 14
22 22 C 1.46662 * 109.33322 * 18.44815 * 13 12 10
23 23 C 1.53680 * 107.96653 * 359.29003 * 22 13 12
24 24 H 1.09001 * 112.77031 * 106.02098 * 23 22 13
25 25 C 1.46757 * 125.33321 * 355.02592 * 8 6 5
26 26 C 1.39929 * 118.12351 * 0.26764 * 5 4 3
27 27 C 1.50700 * 120.53650 * 179.72968 * 26 5 4
28 28 C 1.52999 * 109.47161 * 124.17975 * 27 26 5
29 29 C 1.52999 * 109.46789 * 244.17889 * 27 26 5
30 30 N 1.31854 * 118.94888 * 179.97438 * 2 1 3
31 31 H 1.08999 * 109.47273 * 89.99189 * 1 2 3
32 32 H 1.09000 * 109.47440 * 209.99874 * 1 2 3
33 33 H 1.09002 * 109.47221 * 330.00057 * 1 2 3
34 34 H 1.08003 * 120.53777 * 179.97438 * 4 3 2
35 35 H 1.08997 * 109.77159 * 59.66223 * 9 8 6
36 36 H 1.08999 * 109.76848 * 298.91935 * 9 8 6
37 37 H 1.08995 * 110.01988 * 323.03957 * 12 10 9
38 38 H 1.09000 * 110.01658 * 201.65049 * 12 10 9
39 39 H 0.96997 * 119.99756 * 179.97438 * 17 16 14
40 40 H 1.08997 * 109.76738 * 239.66607 * 22 13 12
41 41 H 1.09000 * 109.76826 * 118.91682 * 22 13 12
42 42 H 1.08998 * 110.02190 * 79.14294 * 25 8 6
43 43 H 1.09004 * 110.01721 * 317.75237 * 25 8 6
44 44 H 1.08999 * 109.47684 * 4.17591 * 27 26 5
45 45 H 1.09000 * 109.47137 * 59.99837 * 28 27 26
46 46 H 1.09001 * 109.46737 * 179.97438 * 28 27 26
47 47 H 1.08996 * 109.47194 * 299.99505 * 28 27 26
48 48 H 1.09003 * 109.47227 * 60.00021 * 29 27 26
49 49 H 1.09003 * 109.47053 * 180.02562 * 29 27 26
50 50 H 1.09000 * 109.47219 * 299.99985 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1454 1.1540 0.0000
4 6 3.4659 1.2005 0.0005
5 6 4.1854 -0.0001 0.0005
6 6 5.6638 -0.0002 0.0005
7 8 6.2715 -0.7314 0.7577
8 7 6.3378 0.8105 -0.8392
9 6 7.7941 0.9813 -0.8668
10 6 8.1331 1.9801 -1.9844
11 1 8.4289 2.9608 -1.6116
12 6 9.1832 1.3568 -2.9225
13 7 8.4522 0.4972 -3.8608
14 6 9.0065 -0.5012 -4.6166
15 1 8.3857 -1.0827 -5.2820
16 6 10.3662 -0.7657 -4.5275
17 7 11.1228 -0.0572 -3.7162
18 14 11.1222 -2.1280 -5.5580
19 1 11.5683 -1.5734 -6.8613
20 1 12.2879 -2.7032 -4.8398
21 1 10.1115 -3.1906 -5.7921
22 6 7.0351 0.8752 -3.8626
23 6 6.8500 2.0251 -2.8600
24 1 6.6999 2.9889 -3.3465
25 6 5.7293 1.6607 -1.8691
26 6 3.4660 -1.2003 -0.0058
27 6 4.1856 -2.5244 -0.0123
28 6 3.7167 -3.3654 1.1767
29 6 3.8774 -3.2658 -1.3146
30 7 2.1452 -1.1538 0.0005
31 1 -0.3634 0.0001 -1.0276
32 1 -0.3634 -0.8900 0.5138
33 1 -0.3634 0.8900 0.5138
34 1 3.9817 2.1494 0.0001
35 1 8.2738 0.0239 -1.0700
36 1 8.1379 1.3700 0.0917
37 1 9.8920 0.7622 -2.3464
38 1 9.7092 2.1409 -3.4671
39 1 12.0728 -0.2424 -3.6537
40 1 6.4259 0.0227 -3.5624
41 1 6.7428 1.2047 -4.8596
42 1 5.3241 2.5650 -1.4150
43 1 4.9387 1.1150 -2.3841
44 1 5.2596 -2.3547 0.0638
45 1 2.6427 -3.5352 1.1006
46 1 4.2368 -4.3233 1.1717
47 1 3.9362 -2.8372 2.1045
48 1 4.2115 -2.6666 -2.1617
49 1 4.3975 -4.2238 -1.3191
50 1 2.8034 -3.4356 -1.3907
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049095304.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:06:07
Heat of formation + Delta-G solvation = 20.452391 kcal
Electronic energy + Delta-G solvation = -31521.454179 eV
Core-core repulsion = 27548.524422 eV
Total energy + Delta-G solvation = -3972.929757 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-42.63935 -41.35252 -39.64319 -37.31435 -36.59188 -34.77122 -34.03767 -33.27787
-31.82610 -31.34369 -29.91249 -28.16826 -27.43281 -27.10221 -25.98544 -25.19937
-23.88920 -21.89729 -21.81090 -20.99195 -20.88815 -19.14500 -18.97576 -18.14102
-17.43933 -17.11015 -16.97711 -16.71328 -16.31877 -16.03683 -15.63273 -15.35869
-15.00105 -14.66819 -14.58006 -14.39591 -14.27907 -14.16775 -13.77911 -13.58418
-13.44125 -13.32469 -13.23770 -13.13690 -13.05595 -12.83519 -12.79172 -12.72494
-12.58806 -12.39595 -12.06993 -11.98251 -11.91369 -11.77963 -11.62158 -11.54031
-11.40292 -11.02181 -10.72702 -10.53033 -10.39925 -9.72824 -8.87949 -7.82588
-5.22410 -0.60401 -0.13211 1.40863 1.43438 1.44861 1.53163 1.81328
2.46895 2.52449 2.74383 2.90283 3.16321 3.22771 3.29856 3.40044
3.65310 3.69030 3.78676 3.91960 3.98380 4.04754 4.06444 4.21054
4.22075 4.29518 4.45069 4.51289 4.54808 4.68615 4.72019 4.73349
4.75773 4.82423 4.83062 4.86480 4.88104 4.91411 5.01462 5.02361
5.11624 5.18612 5.19639 5.25050 5.31685 5.35568 5.45708 5.59526
5.75628 5.81607 6.27842 6.34295 6.87776 6.89941 7.11162 7.79393
8.39182 9.21517
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.013753 B = 0.003341 C = 0.003040
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2035.442028 B = 8377.989162 C = 9209.698235
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 C 0.326 3.674
3 N -0.527 5.527
4 C 0.199 3.801
5 C -0.254 4.254
6 C 0.582 3.418
7 O -0.566 6.566
8 N -0.598 5.598
9 C 0.130 3.870
10 C -0.106 4.106
11 H 0.129 0.871
12 C 0.174 3.826
13 N -0.621 5.621
14 C -0.241 4.241
15 H 0.075 0.925
16 C -0.062 4.062
17 N -0.945 5.945
18 Si 0.973 3.027
19 H -0.284 1.284
20 H -0.294 1.294
21 H -0.274 1.274
22 C 0.138 3.862
23 C -0.093 4.093
24 H 0.138 0.862
25 C 0.110 3.890
26 C 0.232 3.768
27 C -0.069 4.069
28 C -0.125 4.125
29 C -0.132 4.132
30 N -0.521 5.521
31 H 0.104 0.896
32 H 0.096 0.904
33 H 0.101 0.899
34 H 0.201 0.799
35 H 0.032 0.968
36 H 0.075 0.925
37 H 0.057 0.943
38 H -0.004 1.004
39 H 0.247 0.753
40 H 0.008 0.992
41 H 0.027 0.973
42 H 0.114 0.886
43 H 0.073 0.927
44 H 0.081 0.919
45 H 0.073 0.927
46 H 0.074 0.926
47 H 0.043 0.957
48 H 0.037 0.963
49 H 0.075 0.925
50 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.326 4.547 8.128 23.271
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.061 3.939
3 N -0.242 5.242
4 C 0.031 3.969
5 C -0.262 4.262
6 C 0.370 3.630
7 O -0.446 6.446
8 N -0.329 5.329
9 C 0.007 3.993
10 C -0.126 4.126
11 H 0.147 0.853
12 C 0.049 3.951
13 N -0.347 5.347
14 C -0.370 4.370
15 H 0.093 0.907
16 C -0.255 4.255
17 N -0.594 5.594
18 Si 0.802 3.198
19 H -0.210 1.210
20 H -0.220 1.220
21 H -0.199 1.199
22 C 0.013 3.987
23 C -0.112 4.112
24 H 0.156 0.844
25 C -0.012 4.012
26 C 0.085 3.915
27 C -0.088 4.088
28 C -0.182 4.182
29 C -0.190 4.190
30 N -0.236 5.236
31 H 0.122 0.878
32 H 0.115 0.885
33 H 0.120 0.880
34 H 0.217 0.783
35 H 0.050 0.950
36 H 0.094 0.906
37 H 0.076 0.924
38 H 0.014 0.986
39 H 0.057 0.943
40 H 0.026 0.974
41 H 0.045 0.955
42 H 0.131 0.869
43 H 0.091 0.909
44 H 0.099 0.901
45 H 0.092 0.908
46 H 0.093 0.907
47 H 0.063 0.937
48 H 0.057 0.943
49 H 0.094 0.906
50 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -21.894 4.018 8.529 23.837
hybrid contribution 2.277 -0.938 -0.729 2.568
sum -19.616 3.080 7.800 21.334
Atomic orbital electron populations
1.20779 0.82544 1.05503 1.05369 1.24309 1.00073 0.82933 0.86607
1.68441 1.09277 1.30096 1.16358 1.23860 0.89471 0.97743 0.85777
1.21413 0.94495 0.97634 1.12665 1.17685 0.86455 0.78944 0.79895
1.90751 1.70303 1.41081 1.42481 1.48192 1.07860 1.42592 1.34276
1.21667 0.79685 0.98697 0.99236 1.23081 0.96326 0.98996 0.94221
0.85335 1.21222 0.92374 0.91665 0.89859 1.44477 1.03896 1.38230
1.48099 1.19348 0.92012 1.08758 1.16881 0.90741 1.25547 0.96692
1.01941 1.01291 1.70092 1.04876 1.43116 1.41299 0.85152 0.77745
0.78982 0.77915 1.21037 1.22032 1.19896 1.21340 0.85559 0.94707
0.97120 1.22894 0.93727 0.99820 0.94809 0.84442 1.22303 0.95559
0.95140 0.88170 1.21880 0.89542 0.94873 0.85193 1.20486 0.99495
0.90132 0.98723 1.21627 1.02332 0.99172 0.95085 1.21723 1.02967
1.00137 0.94156 1.68200 1.08212 1.30662 1.16498 0.87772 0.88482
0.88016 0.78260 0.94990 0.90642 0.92441 0.98576 0.94345 0.97381
0.95473 0.86864 0.90851 0.90082 0.90765 0.90716 0.93736 0.94349
0.90648 0.90647
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.98 10.31 71.24 0.73 -0.25 16
2 C 0.33 6.69 7.64 138.70 1.06 7.75 16
3 N -0.53 -11.05 10.32 -186.79 -1.93 -12.97 16
4 C 0.20 4.18 9.82 85.07 0.84 5.02 16
5 C -0.25 -6.88 5.21 -19.91 -0.10 -6.99 16
6 C 0.58 18.97 6.84 86.78 0.59 19.57 16
7 O -0.57 -22.69 15.21 -3.87 -0.06 -22.74 16
8 N -0.60 -18.05 3.31 -820.97 -2.72 -20.76 16
9 C 0.13 4.52 6.24 86.58 0.54 5.06 16
10 C -0.11 -3.45 4.09 -9.41 -0.04 -3.49 16
11 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16
12 C 0.17 8.13 4.84 86.66 0.42 8.55 16
13 N -0.62 -31.19 3.38 -697.72 -2.35 -33.54 16
14 C -0.24 -13.56 10.25 84.03 0.86 -12.70 16
15 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16
16 C -0.06 -3.51 5.48 84.86 0.47 -3.04 16
17 N -0.94 -56.04 10.16 21.65 0.22 -55.82 16
18 Si 0.97 46.24 29.55 68.60 2.03 48.26 16
19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16
20 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16
21 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16
22 C 0.14 5.37 6.63 86.58 0.57 5.94 16
23 C -0.09 -2.58 4.09 -9.41 -0.04 -2.62 16
24 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16
25 C 0.11 2.51 4.67 86.66 0.40 2.91 16
26 C 0.23 6.34 5.51 42.92 0.24 6.57 16
27 C -0.07 -1.91 2.96 -11.54 -0.03 -1.95 16
28 C -0.12 -2.90 9.07 71.98 0.65 -2.25 16
29 C -0.13 -3.28 9.14 71.98 0.66 -2.62 16
30 N -0.52 -12.54 9.90 -175.03 -1.73 -14.27 16
31 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16
32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16
33 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16
34 H 0.20 2.91 6.62 -2.91 -0.02 2.89 16
35 H 0.03 1.44 7.47 -2.39 -0.02 1.43 16
36 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16
37 H 0.06 3.15 5.83 -2.39 -0.01 3.14 16
38 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16
39 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16
40 H 0.01 0.34 7.47 -2.39 -0.02 0.32 16
41 H 0.03 1.03 8.14 -2.39 -0.02 1.02 16
42 H 0.11 1.61 6.95 -2.39 -0.02 1.59 16
43 H 0.07 1.68 7.46 -2.38 -0.02 1.66 16
44 H 0.08 2.78 5.23 -2.39 -0.01 2.77 16
45 H 0.07 1.55 7.99 -2.39 -0.02 1.53 16
46 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16
47 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16
48 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16
49 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16
50 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
Total: -1.00 -74.18 392.94 2.22 -71.96
By element:
Atomic # 1 Polarization: 13.49 SS G_CDS: 0.94 Total: 14.43 kcal
Atomic # 6 Polarization: 17.64 SS G_CDS: 7.82 Total: 25.46 kcal
Atomic # 7 Polarization: -128.86 SS G_CDS: -8.51 Total: -137.37 kcal
Atomic # 8 Polarization: -22.69 SS G_CDS: -0.06 Total: -22.74 kcal
Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal
Total: -74.18 2.22 -71.96 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049095304.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 92.414 kcal
(2) G-P(sol) polarization free energy of solvation -74.182 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.233 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.962 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.452 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds