Wall clock time and date at job start Wed Apr 1 2020 03:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31886 * 118.95163 * 2 1 4 4 C 1.32134 * 120.96467 * 179.97438 * 3 2 1 5 5 C 1.39966 * 118.92124 * 0.02562 * 4 3 2 6 6 C 1.47836 * 120.93831 * 179.97438 * 5 4 3 7 7 O 1.21550 * 120.00098 * 133.99634 * 6 5 4 8 8 N 1.34780 * 120.00061 * 313.99722 * 6 5 4 9 9 C 1.46654 * 125.33483 * 175.02443 * 8 6 5 10 10 C 1.53678 * 107.96880 * 179.29164 * 9 8 6 11 11 H 1.08999 * 113.31962 * 106.33457 * 10 9 8 12 12 C 1.53982 * 109.29378 * 233.06004 * 10 9 8 13 13 N 1.46753 * 106.67659 * 82.34425 * 12 10 9 14 14 C 1.36944 * 125.33464 * 198.42719 * 13 12 10 15 15 H 1.07996 * 119.99806 * 180.02562 * 14 13 12 16 16 C 1.38807 * 119.99951 * 0.02562 * 14 13 12 17 17 N 1.31625 * 120.00107 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99979 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47180 * 90.00550 * 18 16 14 20 20 H 1.48505 * 109.47046 * 210.00439 * 18 16 14 21 21 H 1.48502 * 109.47240 * 330.00480 * 18 16 14 22 22 C 1.46662 * 109.33322 * 18.44815 * 13 12 10 23 23 C 1.53680 * 107.96653 * 359.29003 * 22 13 12 24 24 H 1.09001 * 112.77031 * 106.02098 * 23 22 13 25 25 C 1.46757 * 125.33321 * 355.02592 * 8 6 5 26 26 C 1.39929 * 118.12351 * 0.26764 * 5 4 3 27 27 C 1.50700 * 120.53650 * 179.72968 * 26 5 4 28 28 C 1.52999 * 109.47161 * 124.17975 * 27 26 5 29 29 C 1.52999 * 109.46789 * 244.17889 * 27 26 5 30 30 N 1.31854 * 118.94888 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47273 * 89.99189 * 1 2 3 32 32 H 1.09000 * 109.47440 * 209.99874 * 1 2 3 33 33 H 1.09002 * 109.47221 * 330.00057 * 1 2 3 34 34 H 1.08003 * 120.53777 * 179.97438 * 4 3 2 35 35 H 1.08997 * 109.77159 * 59.66223 * 9 8 6 36 36 H 1.08999 * 109.76848 * 298.91935 * 9 8 6 37 37 H 1.08995 * 110.01988 * 323.03957 * 12 10 9 38 38 H 1.09000 * 110.01658 * 201.65049 * 12 10 9 39 39 H 0.96997 * 119.99756 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.76738 * 239.66607 * 22 13 12 41 41 H 1.09000 * 109.76826 * 118.91682 * 22 13 12 42 42 H 1.08998 * 110.02190 * 79.14294 * 25 8 6 43 43 H 1.09004 * 110.01721 * 317.75237 * 25 8 6 44 44 H 1.08999 * 109.47684 * 4.17591 * 27 26 5 45 45 H 1.09000 * 109.47137 * 59.99837 * 28 27 26 46 46 H 1.09001 * 109.46737 * 179.97438 * 28 27 26 47 47 H 1.08996 * 109.47194 * 299.99505 * 28 27 26 48 48 H 1.09003 * 109.47227 * 60.00021 * 29 27 26 49 49 H 1.09003 * 109.47053 * 180.02562 * 29 27 26 50 50 H 1.09000 * 109.47219 * 299.99985 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2005 0.0005 5 6 4.1854 -0.0001 0.0005 6 6 5.6638 -0.0002 0.0005 7 8 6.2715 -0.7314 0.7577 8 7 6.3378 0.8105 -0.8392 9 6 7.7941 0.9813 -0.8668 10 6 8.1331 1.9801 -1.9844 11 1 8.4289 2.9608 -1.6116 12 6 9.1832 1.3568 -2.9225 13 7 8.4522 0.4972 -3.8608 14 6 9.0065 -0.5012 -4.6166 15 1 8.3857 -1.0827 -5.2820 16 6 10.3662 -0.7657 -4.5275 17 7 11.1228 -0.0572 -3.7162 18 14 11.1222 -2.1280 -5.5580 19 1 11.5683 -1.5734 -6.8613 20 1 12.2879 -2.7032 -4.8398 21 1 10.1115 -3.1906 -5.7921 22 6 7.0351 0.8752 -3.8626 23 6 6.8500 2.0251 -2.8600 24 1 6.6999 2.9889 -3.3465 25 6 5.7293 1.6607 -1.8691 26 6 3.4660 -1.2003 -0.0058 27 6 4.1856 -2.5244 -0.0123 28 6 3.7167 -3.3654 1.1767 29 6 3.8774 -3.2658 -1.3146 30 7 2.1452 -1.1538 0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 3.9817 2.1494 0.0001 35 1 8.2738 0.0239 -1.0700 36 1 8.1379 1.3700 0.0917 37 1 9.8920 0.7622 -2.3464 38 1 9.7092 2.1409 -3.4671 39 1 12.0728 -0.2424 -3.6537 40 1 6.4259 0.0227 -3.5624 41 1 6.7428 1.2047 -4.8596 42 1 5.3241 2.5650 -1.4150 43 1 4.9387 1.1150 -2.3841 44 1 5.2596 -2.3547 0.0638 45 1 2.6427 -3.5352 1.1006 46 1 4.2368 -4.3233 1.1717 47 1 3.9362 -2.8372 2.1045 48 1 4.2115 -2.6666 -2.1617 49 1 4.3975 -4.2238 -1.3191 50 1 2.8034 -3.4356 -1.3907 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049095304.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:07 Heat of formation + Delta-G solvation = 20.452391 kcal Electronic energy + Delta-G solvation = -31521.454179 eV Core-core repulsion = 27548.524422 eV Total energy + Delta-G solvation = -3972.929757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.63935 -41.35252 -39.64319 -37.31435 -36.59188 -34.77122 -34.03767 -33.27787 -31.82610 -31.34369 -29.91249 -28.16826 -27.43281 -27.10221 -25.98544 -25.19937 -23.88920 -21.89729 -21.81090 -20.99195 -20.88815 -19.14500 -18.97576 -18.14102 -17.43933 -17.11015 -16.97711 -16.71328 -16.31877 -16.03683 -15.63273 -15.35869 -15.00105 -14.66819 -14.58006 -14.39591 -14.27907 -14.16775 -13.77911 -13.58418 -13.44125 -13.32469 -13.23770 -13.13690 -13.05595 -12.83519 -12.79172 -12.72494 -12.58806 -12.39595 -12.06993 -11.98251 -11.91369 -11.77963 -11.62158 -11.54031 -11.40292 -11.02181 -10.72702 -10.53033 -10.39925 -9.72824 -8.87949 -7.82588 -5.22410 -0.60401 -0.13211 1.40863 1.43438 1.44861 1.53163 1.81328 2.46895 2.52449 2.74383 2.90283 3.16321 3.22771 3.29856 3.40044 3.65310 3.69030 3.78676 3.91960 3.98380 4.04754 4.06444 4.21054 4.22075 4.29518 4.45069 4.51289 4.54808 4.68615 4.72019 4.73349 4.75773 4.82423 4.83062 4.86480 4.88104 4.91411 5.01462 5.02361 5.11624 5.18612 5.19639 5.25050 5.31685 5.35568 5.45708 5.59526 5.75628 5.81607 6.27842 6.34295 6.87776 6.89941 7.11162 7.79393 8.39182 9.21517 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013753 B = 0.003341 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.442028 B = 8377.989162 C = 9209.698235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.326 3.674 3 N -0.527 5.527 4 C 0.199 3.801 5 C -0.254 4.254 6 C 0.582 3.418 7 O -0.566 6.566 8 N -0.598 5.598 9 C 0.130 3.870 10 C -0.106 4.106 11 H 0.129 0.871 12 C 0.174 3.826 13 N -0.621 5.621 14 C -0.241 4.241 15 H 0.075 0.925 16 C -0.062 4.062 17 N -0.945 5.945 18 Si 0.973 3.027 19 H -0.284 1.284 20 H -0.294 1.294 21 H -0.274 1.274 22 C 0.138 3.862 23 C -0.093 4.093 24 H 0.138 0.862 25 C 0.110 3.890 26 C 0.232 3.768 27 C -0.069 4.069 28 C -0.125 4.125 29 C -0.132 4.132 30 N -0.521 5.521 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.201 0.799 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.057 0.943 38 H -0.004 1.004 39 H 0.247 0.753 40 H 0.008 0.992 41 H 0.027 0.973 42 H 0.114 0.886 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.037 0.963 49 H 0.075 0.925 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.326 4.547 8.128 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.061 3.939 3 N -0.242 5.242 4 C 0.031 3.969 5 C -0.262 4.262 6 C 0.370 3.630 7 O -0.446 6.446 8 N -0.329 5.329 9 C 0.007 3.993 10 C -0.126 4.126 11 H 0.147 0.853 12 C 0.049 3.951 13 N -0.347 5.347 14 C -0.370 4.370 15 H 0.093 0.907 16 C -0.255 4.255 17 N -0.594 5.594 18 Si 0.802 3.198 19 H -0.210 1.210 20 H -0.220 1.220 21 H -0.199 1.199 22 C 0.013 3.987 23 C -0.112 4.112 24 H 0.156 0.844 25 C -0.012 4.012 26 C 0.085 3.915 27 C -0.088 4.088 28 C -0.182 4.182 29 C -0.190 4.190 30 N -0.236 5.236 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.217 0.783 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.014 0.986 39 H 0.057 0.943 40 H 0.026 0.974 41 H 0.045 0.955 42 H 0.131 0.869 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.094 0.906 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.894 4.018 8.529 23.837 hybrid contribution 2.277 -0.938 -0.729 2.568 sum -19.616 3.080 7.800 21.334 Atomic orbital electron populations 1.20779 0.82544 1.05503 1.05369 1.24309 1.00073 0.82933 0.86607 1.68441 1.09277 1.30096 1.16358 1.23860 0.89471 0.97743 0.85777 1.21413 0.94495 0.97634 1.12665 1.17685 0.86455 0.78944 0.79895 1.90751 1.70303 1.41081 1.42481 1.48192 1.07860 1.42592 1.34276 1.21667 0.79685 0.98697 0.99236 1.23081 0.96326 0.98996 0.94221 0.85335 1.21222 0.92374 0.91665 0.89859 1.44477 1.03896 1.38230 1.48099 1.19348 0.92012 1.08758 1.16881 0.90741 1.25547 0.96692 1.01941 1.01291 1.70092 1.04876 1.43116 1.41299 0.85152 0.77745 0.78982 0.77915 1.21037 1.22032 1.19896 1.21340 0.85559 0.94707 0.97120 1.22894 0.93727 0.99820 0.94809 0.84442 1.22303 0.95559 0.95140 0.88170 1.21880 0.89542 0.94873 0.85193 1.20486 0.99495 0.90132 0.98723 1.21627 1.02332 0.99172 0.95085 1.21723 1.02967 1.00137 0.94156 1.68200 1.08212 1.30662 1.16498 0.87772 0.88482 0.88016 0.78260 0.94990 0.90642 0.92441 0.98576 0.94345 0.97381 0.95473 0.86864 0.90851 0.90082 0.90765 0.90716 0.93736 0.94349 0.90648 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.31 71.24 0.73 -0.25 16 2 C 0.33 6.69 7.64 138.70 1.06 7.75 16 3 N -0.53 -11.05 10.32 -186.79 -1.93 -12.97 16 4 C 0.20 4.18 9.82 85.07 0.84 5.02 16 5 C -0.25 -6.88 5.21 -19.91 -0.10 -6.99 16 6 C 0.58 18.97 6.84 86.78 0.59 19.57 16 7 O -0.57 -22.69 15.21 -3.87 -0.06 -22.74 16 8 N -0.60 -18.05 3.31 -820.97 -2.72 -20.76 16 9 C 0.13 4.52 6.24 86.58 0.54 5.06 16 10 C -0.11 -3.45 4.09 -9.41 -0.04 -3.49 16 11 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 12 C 0.17 8.13 4.84 86.66 0.42 8.55 16 13 N -0.62 -31.19 3.38 -697.72 -2.35 -33.54 16 14 C -0.24 -13.56 10.25 84.03 0.86 -12.70 16 15 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 16 C -0.06 -3.51 5.48 84.86 0.47 -3.04 16 17 N -0.94 -56.04 10.16 21.65 0.22 -55.82 16 18 Si 0.97 46.24 29.55 68.60 2.03 48.26 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 21 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 22 C 0.14 5.37 6.63 86.58 0.57 5.94 16 23 C -0.09 -2.58 4.09 -9.41 -0.04 -2.62 16 24 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 25 C 0.11 2.51 4.67 86.66 0.40 2.91 16 26 C 0.23 6.34 5.51 42.92 0.24 6.57 16 27 C -0.07 -1.91 2.96 -11.54 -0.03 -1.95 16 28 C -0.12 -2.90 9.07 71.98 0.65 -2.25 16 29 C -0.13 -3.28 9.14 71.98 0.66 -2.62 16 30 N -0.52 -12.54 9.90 -175.03 -1.73 -14.27 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.20 2.91 6.62 -2.91 -0.02 2.89 16 35 H 0.03 1.44 7.47 -2.39 -0.02 1.43 16 36 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.06 3.15 5.83 -2.39 -0.01 3.14 16 38 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 40 H 0.01 0.34 7.47 -2.39 -0.02 0.32 16 41 H 0.03 1.03 8.14 -2.39 -0.02 1.02 16 42 H 0.11 1.61 6.95 -2.39 -0.02 1.59 16 43 H 0.07 1.68 7.46 -2.38 -0.02 1.66 16 44 H 0.08 2.78 5.23 -2.39 -0.01 2.77 16 45 H 0.07 1.55 7.99 -2.39 -0.02 1.53 16 46 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -74.18 392.94 2.22 -71.96 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.94 Total: 14.43 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: 7.82 Total: 25.46 kcal Atomic # 7 Polarization: -128.86 SS G_CDS: -8.51 Total: -137.37 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.06 Total: -22.74 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -74.18 2.22 -71.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049095304.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.414 kcal (2) G-P(sol) polarization free energy of solvation -74.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds