Wall clock time and date at job start Wed Apr 1 2020 03:31:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50701 * 109.46977 * 2 1
4 4 N 1.31928 * 120.17323 * 274.96471 * 3 2 1
5 5 N 1.28273 * 122.32238 * 180.27498 * 4 3 2
6 6 C 1.31917 * 122.52154 * 359.72293 * 5 4 3
7 7 C 1.50695 * 120.01581 * 179.97438 * 6 5 4
8 8 C 1.38499 * 119.96718 * 359.97438 * 6 5 4
9 9 C 1.39727 * 120.17219 * 94.69459 * 3 2 1
10 10 C 1.48138 * 121.14697 * 0.02562 * 9 3 2
11 11 O 1.21513 * 119.99800 * 54.49154 * 10 9 3
12 12 N 1.34769 * 120.00158 * 234.49631 * 10 9 3
13 13 C 1.46796 * 119.57711 * 355.98532 * 12 10 9
14 14 C 1.53466 * 107.59831 * 127.97556 * 13 12 10
15 15 C 1.52743 * 108.43935 * 58.07648 * 14 13 12
16 16 C 1.54517 * 110.40948 * 295.68955 * 15 14 13
17 17 H 1.08996 * 113.49468 * 291.35798 * 16 15 14
18 18 C 1.45119 * 119.57647 * 176.01162 * 12 10 9
19 19 H 1.08996 * 109.97112 * 348.95737 * 18 12 10
20 20 C 1.54428 * 111.60821 * 111.32560 * 18 12 10
21 21 C 1.55468 * 102.03317 * 155.94726 * 20 18 12
22 22 N 1.47115 * 107.60138 * 339.52284 * 21 20 18
23 23 C 1.36940 * 125.76640 * 176.63523 * 22 21 20
24 24 H 1.07997 * 120.00354 * 175.25067 * 23 22 21
25 25 C 1.38814 * 120.00113 * 355.24813 * 23 22 21
26 26 N 1.31627 * 119.99773 * 5.93111 * 25 23 22
27 27 Si 1.86796 * 120.00085 * 185.93599 * 25 23 22
28 28 H 1.48502 * 109.47193 * 94.99470 * 27 25 23
29 29 H 1.48502 * 109.47144 * 214.98865 * 27 25 23
30 30 H 1.48500 * 109.47290 * 334.99396 * 27 25 23
31 31 H 1.09001 * 109.47168 * 300.00221 * 1 2 3
32 32 H 1.09003 * 109.47078 * 60.00460 * 1 2 3
33 33 H 1.09004 * 109.47028 * 179.97438 * 1 2 3
34 34 H 1.08993 * 109.47219 * 240.00133 * 2 1 3
35 35 H 1.09002 * 109.46560 * 119.99610 * 2 1 3
36 36 H 1.09003 * 109.47518 * 270.01904 * 7 6 5
37 37 H 1.09002 * 109.47345 * 30.01715 * 7 6 5
38 38 H 1.08998 * 109.47355 * 150.01452 * 7 6 5
39 39 H 1.08003 * 121.08796 * 180.02562 * 8 6 5
40 40 H 1.09002 * 109.83667 * 8.45514 * 13 12 10
41 41 H 1.09005 * 109.89199 * 247.53141 * 13 12 10
42 42 H 1.09005 * 109.64483 * 177.76090 * 14 13 12
43 43 H 1.08997 * 109.64514 * 298.39528 * 14 13 12
44 44 H 1.09003 * 109.20454 * 56.57350 * 15 14 13
45 45 H 1.08994 * 109.20970 * 175.88683 * 15 14 13
46 46 H 1.08999 * 110.80516 * 274.81656 * 20 18 12
47 47 H 1.09003 * 110.80947 * 38.33150 * 20 18 12
48 48 H 1.08998 * 110.32149 * 219.64737 * 21 20 18
49 49 H 1.09003 * 109.23649 * 98.77102 * 21 20 18
50 50 H 0.96998 * 119.99747 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.1603 2.0789 -1.1363
5 7 2.5885 3.2871 -1.1846
6 6 2.9275 3.9632 -0.1038
7 6 3.4245 5.3805 -0.2262
8 6 2.8263 3.3698 1.1435
9 6 2.3596 2.0500 1.2039
10 6 2.2235 1.3441 2.4991
11 8 2.7715 0.2727 2.6676
12 7 1.4918 1.8900 3.4905
13 6 0.9071 3.2242 3.3092
14 6 -0.5890 3.1235 3.6361
15 6 -0.7374 2.6101 5.0669
16 6 -0.1789 1.1742 5.1848
17 1 -0.7744 0.4314 4.6540
18 6 1.2925 1.1516 4.7238
19 1 1.6286 0.1222 4.5998
20 6 2.0343 1.8104 5.9073
21 6 1.2191 1.2964 7.1273
22 7 -0.1011 0.8743 6.6342
23 6 -1.0908 0.3006 7.3870
24 1 -2.0551 0.0962 6.9459
25 6 -0.8545 -0.0183 8.7172
26 7 0.2778 0.3355 9.2876
27 14 -2.1432 -0.9496 9.6976
28 1 -1.8369 -2.4023 9.6633
29 1 -2.1334 -0.4748 11.1046
30 1 -3.4836 -0.7123 9.1042
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5138 -0.8901
33 1 -0.3633 -1.0277 -0.0005
34 1 1.8934 -0.5138 -0.8899
35 1 1.8933 -0.5138 0.8901
36 1 4.5084 5.3768 -0.3423
37 1 2.9677 5.8520 -1.0964
38 1 3.1572 5.9382 0.6713
39 1 3.0985 3.9067 2.0402
40 1 1.0391 3.5488 2.2770
41 1 1.3861 3.9339 3.9839
42 1 -1.0499 4.1076 3.5503
43 1 -1.0688 2.4294 2.9462
44 1 -0.1988 3.2734 5.7436
45 1 -1.7931 2.6030 5.3377
46 1 3.0709 1.4762 5.9488
47 1 1.9789 2.8971 5.8424
48 1 1.1029 2.0893 7.8661
49 1 1.7371 0.4473 7.5733
50 1 0.4428 0.1130 10.2172
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049558421.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:31:43
Heat of formation + Delta-G solvation = 50.100575 kcal
Electronic energy + Delta-G solvation = -31762.945834 eV
Core-core repulsion = 27791.301719 eV
Total energy + Delta-G solvation = -3971.644115 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.75772 -40.22493 -38.14838 -35.62540 -35.27515 -33.93491 -32.56367 -32.36702
-31.65683 -29.13158 -28.42670 -28.12151 -26.01190 -25.00519 -24.39178 -23.87641
-22.36064 -21.95616 -20.68493 -20.08664 -18.42732 -18.03016 -17.47755 -16.96341
-16.42243 -16.01705 -15.49617 -14.91328 -14.83237 -14.65429 -14.44991 -14.16618
-14.02554 -13.89788 -13.79134 -13.44375 -13.42253 -13.00618 -12.75400 -12.63667
-12.53705 -12.20702 -12.06386 -12.02986 -11.49548 -11.25263 -11.16677 -11.09209
-11.03566 -10.89766 -10.77993 -10.72553 -10.54760 -10.18939 -10.12951 -10.10442
-9.78854 -9.73604 -9.68869 -9.56057 -8.66975 -8.49668 -6.93480 -5.78781
-3.12466 0.20609 0.54705 2.40343 2.80457 3.19325 3.36541 3.42041
3.43730 3.61471 3.95158 4.04784 4.19667 4.42395 4.46910 4.69007
4.77151 4.92439 4.98567 5.04270 5.12085 5.13242 5.16566 5.24707
5.28425 5.32332 5.36886 5.46586 5.48745 5.54978 5.59696 5.61209
5.73263 5.80363 5.84957 5.86407 5.95408 6.00136 6.03129 6.11717
6.17535 6.24295 6.39019 6.45712 6.58423 6.79357 6.93414 7.31012
7.45886 7.54813 7.75199 7.97783 8.16578 8.41658 9.13220 9.72965
10.38273 11.32523
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.018936 B = 0.003029 C = 0.002883
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1478.347891 B = 9241.471716 C = 9709.593814
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.087 4.087
3 C 0.112 3.888
4 N -0.235 5.235
5 N -0.231 5.231
6 C 0.060 3.940
7 C -0.100 4.100
8 C -0.088 4.088
9 C -0.110 4.110
10 C 0.559 3.441
11 O -0.521 6.521
12 N -0.577 5.577
13 C 0.097 3.903
14 C -0.133 4.133
15 C -0.129 4.129
16 C 0.157 3.843
17 H 0.066 0.934
18 C 0.128 3.872
19 H 0.103 0.897
20 C -0.152 4.152
21 C 0.180 3.820
22 N -0.597 5.597
23 C -0.229 4.229
24 H 0.079 0.921
25 C -0.005 4.005
26 N -0.919 5.919
27 Si 0.911 3.089
28 H -0.288 1.288
29 H -0.291 1.291
30 H -0.281 1.281
31 H 0.055 0.945
32 H 0.059 0.941
33 H 0.069 0.931
34 H 0.090 0.910
35 H 0.104 0.896
36 H 0.084 0.916
37 H 0.084 0.916
38 H 0.081 0.919
39 H 0.156 0.844
40 H 0.078 0.922
41 H 0.076 0.924
42 H 0.070 0.930
43 H 0.063 0.937
44 H 0.065 0.935
45 H 0.061 0.939
46 H 0.064 0.936
47 H 0.059 0.941
48 H 0.041 0.959
49 H 0.053 0.947
50 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.034 9.706 -17.148 20.113
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.126 4.126
3 C -0.033 4.033
4 N -0.076 5.076
5 N -0.074 5.074
6 C -0.085 4.085
7 C -0.158 4.158
8 C -0.118 4.118
9 C -0.125 4.125
10 C 0.344 3.656
11 O -0.397 6.397
12 N -0.308 5.308
13 C -0.025 4.025
14 C -0.172 4.172
15 C -0.169 4.169
16 C 0.048 3.952
17 H 0.083 0.917
18 C 0.024 3.976
19 H 0.121 0.879
20 C -0.191 4.191
21 C 0.055 3.945
22 N -0.322 5.322
23 C -0.357 4.357
24 H 0.096 0.904
25 C -0.201 4.201
26 N -0.565 5.565
27 Si 0.741 3.259
28 H -0.216 1.216
29 H -0.218 1.218
30 H -0.206 1.206
31 H 0.074 0.926
32 H 0.078 0.922
33 H 0.088 0.912
34 H 0.109 0.891
35 H 0.122 0.878
36 H 0.103 0.897
37 H 0.103 0.897
38 H 0.100 0.900
39 H 0.174 0.826
40 H 0.097 0.903
41 H 0.094 0.906
42 H 0.088 0.912
43 H 0.082 0.918
44 H 0.084 0.916
45 H 0.080 0.920
46 H 0.082 0.918
47 H 0.077 0.923
48 H 0.059 0.941
49 H 0.072 0.928
50 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 4.127 9.032 -18.408 20.915
hybrid contribution -0.435 -0.255 2.242 2.298
sum 3.692 8.777 -16.166 18.761
Atomic orbital electron populations
1.21697 0.93378 1.02864 1.02169 1.20734 0.97078 0.89089 1.05680
1.22976 0.93341 0.98442 0.88548 1.73016 1.09494 1.01349 1.23783
1.72824 1.06446 1.01176 1.26982 1.22835 0.96711 0.98995 0.89911
1.20691 1.02059 0.88797 1.04242 1.22519 0.95907 0.93441 0.99901
1.21140 1.00385 0.94976 0.95951 1.17992 0.79701 0.85129 0.82730
1.90798 1.46431 1.21318 1.81157 1.47597 1.49741 1.18033 1.15416
1.22095 0.95030 0.83914 1.01487 1.21943 0.94419 1.01483 0.99354
1.22389 1.02084 0.98711 0.93724 1.21683 0.92189 0.93902 0.87396
0.91651 1.21955 0.97746 0.96522 0.81373 0.87877 1.23278 0.99316
0.99606 0.96897 1.21340 0.84314 0.98492 0.90363 1.44698 1.13939
1.71792 1.01740 1.19025 0.91965 1.32597 0.92149 0.90353 1.24822
0.97450 1.00912 0.96938 1.69960 1.24126 1.50224 1.12231 0.86124
0.80489 0.79872 0.79422 1.21559 1.21769 1.20628 0.92620 0.92179
0.91190 0.89149 0.87795 0.89704 0.89709 0.90014 0.82622 0.90348
0.90614 0.91154 0.91778 0.91634 0.92006 0.91760 0.92274 0.94053
0.92839 0.93669
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.51 9.89 37.16 0.37 -1.15 16
2 C -0.09 -1.03 5.97 -27.88 -0.17 -1.19 16
3 C 0.11 1.44 6.16 -81.99 -0.51 0.93 16
4 N -0.24 -3.17 11.42 33.81 0.39 -2.79 16
5 N -0.23 -2.90 11.41 33.57 0.38 -2.51 16
6 C 0.06 0.58 6.86 -82.46 -0.57 0.01 16
7 C -0.10 -0.58 10.19 36.00 0.37 -0.21 16
8 C -0.09 -0.87 7.31 -38.78 -0.28 -1.15 16
9 C -0.11 -1.37 4.82 -104.57 -0.50 -1.87 16
10 C 0.56 8.18 6.61 -12.20 -0.08 8.10 16
11 O -0.52 -9.28 14.56 5.35 0.08 -9.20 16
12 N -0.58 -8.11 2.73 -166.01 -0.45 -8.56 16
13 C 0.10 1.08 5.29 -3.64 -0.02 1.06 16
14 C -0.13 -1.60 6.10 -26.62 -0.16 -1.76 16
15 C -0.13 -2.07 5.11 -26.07 -0.13 -2.21 16
16 C 0.16 2.98 3.74 -65.56 -0.25 2.73 16
17 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
18 C 0.13 2.22 3.03 -67.29 -0.20 2.02 16
19 H 0.10 2.04 6.98 -51.93 -0.36 1.67 16
20 C -0.15 -2.71 6.16 -24.67 -0.15 -2.87 16
21 C 0.18 4.14 5.18 -2.39 -0.01 4.13 16
22 N -0.60 -14.21 2.89 -160.74 -0.46 -14.67 16
23 C -0.23 -6.07 10.28 -15.06 -0.15 -6.23 16
24 H 0.08 2.02 7.83 -52.49 -0.41 1.60 16
25 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16
26 N -0.92 -26.11 10.36 55.49 0.57 -25.53 16
27 Si 0.91 21.55 29.56 -169.99 -5.02 16.53 16
28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
30 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16
35 H 0.10 1.40 5.70 -51.93 -0.30 1.10 16
36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16
37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
38 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16
39 H 0.16 1.14 7.50 -52.48 -0.39 0.75 16
40 H 0.08 0.74 4.75 -51.93 -0.25 0.49 16
41 H 0.08 0.77 7.53 -51.93 -0.39 0.38 16
42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16
43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
44 H 0.06 1.12 7.10 -51.93 -0.37 0.75 16
45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
46 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16
47 H 0.06 0.95 6.81 -51.93 -0.35 0.60 16
48 H 0.04 1.04 7.70 -51.93 -0.40 0.64 16
49 H 0.05 1.40 7.19 -51.93 -0.37 1.02 16
50 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16
LS Contribution 387.49 15.07 5.84 5.84
Total: -1.00 -31.24 387.49 -9.03 -40.28
By element:
Atomic # 1 Polarization: 8.32 SS G_CDS: -7.80 Total: 0.51 kcal
Atomic # 6 Polarization: 2.66 SS G_CDS: -2.55 Total: 0.11 kcal
Atomic # 7 Polarization: -54.49 SS G_CDS: 0.43 Total: -54.07 kcal
Atomic # 8 Polarization: -9.28 SS G_CDS: 0.08 Total: -9.20 kcal
Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -31.24 -9.03 -40.28 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049558421.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.377 kcal
(2) G-P(sol) polarization free energy of solvation -31.245 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.133 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.101 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds