Wall clock time and date at job start Wed Apr 1 2020 03:31:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50701 * 109.46977 * 2 1
4 4 N 1.31928 * 120.17323 * 274.96471 * 3 2 1
5 5 N 1.28273 * 122.32238 * 180.27498 * 4 3 2
6 6 C 1.31917 * 122.52154 * 359.72293 * 5 4 3
7 7 C 1.50695 * 120.01581 * 179.97438 * 6 5 4
8 8 C 1.38499 * 119.96718 * 359.97438 * 6 5 4
9 9 C 1.39727 * 120.17219 * 94.69459 * 3 2 1
10 10 C 1.48138 * 121.14697 * 0.02562 * 9 3 2
11 11 O 1.21513 * 119.99800 * 54.49154 * 10 9 3
12 12 N 1.34769 * 120.00158 * 234.49631 * 10 9 3
13 13 C 1.46796 * 119.57711 * 355.98532 * 12 10 9
14 14 C 1.53466 * 107.59831 * 127.97556 * 13 12 10
15 15 C 1.52743 * 108.43935 * 58.07648 * 14 13 12
16 16 C 1.54517 * 110.40948 * 295.68955 * 15 14 13
17 17 H 1.08996 * 113.49468 * 291.35798 * 16 15 14
18 18 C 1.45119 * 119.57647 * 176.01162 * 12 10 9
19 19 H 1.08996 * 109.97112 * 348.95737 * 18 12 10
20 20 C 1.54428 * 111.60821 * 111.32560 * 18 12 10
21 21 C 1.55468 * 102.03317 * 155.94726 * 20 18 12
22 22 N 1.47115 * 107.60138 * 339.52284 * 21 20 18
23 23 C 1.36940 * 125.76640 * 176.63523 * 22 21 20
24 24 H 1.07997 * 120.00354 * 175.25067 * 23 22 21
25 25 C 1.38814 * 120.00113 * 355.24813 * 23 22 21
26 26 N 1.31627 * 119.99773 * 5.93111 * 25 23 22
27 27 Si 1.86796 * 120.00085 * 185.93599 * 25 23 22
28 28 H 1.48502 * 109.47193 * 94.99470 * 27 25 23
29 29 H 1.48502 * 109.47144 * 214.98865 * 27 25 23
30 30 H 1.48500 * 109.47290 * 334.99396 * 27 25 23
31 31 H 1.09001 * 109.47168 * 300.00221 * 1 2 3
32 32 H 1.09003 * 109.47078 * 60.00460 * 1 2 3
33 33 H 1.09004 * 109.47028 * 179.97438 * 1 2 3
34 34 H 1.08993 * 109.47219 * 240.00133 * 2 1 3
35 35 H 1.09002 * 109.46560 * 119.99610 * 2 1 3
36 36 H 1.09003 * 109.47518 * 270.01904 * 7 6 5
37 37 H 1.09002 * 109.47345 * 30.01715 * 7 6 5
38 38 H 1.08998 * 109.47355 * 150.01452 * 7 6 5
39 39 H 1.08003 * 121.08796 * 180.02562 * 8 6 5
40 40 H 1.09002 * 109.83667 * 8.45514 * 13 12 10
41 41 H 1.09005 * 109.89199 * 247.53141 * 13 12 10
42 42 H 1.09005 * 109.64483 * 177.76090 * 14 13 12
43 43 H 1.08997 * 109.64514 * 298.39528 * 14 13 12
44 44 H 1.09003 * 109.20454 * 56.57350 * 15 14 13
45 45 H 1.08994 * 109.20970 * 175.88683 * 15 14 13
46 46 H 1.08999 * 110.80516 * 274.81656 * 20 18 12
47 47 H 1.09003 * 110.80947 * 38.33150 * 20 18 12
48 48 H 1.08998 * 110.32149 * 219.64737 * 21 20 18
49 49 H 1.09003 * 109.23649 * 98.77102 * 21 20 18
50 50 H 0.96998 * 119.99747 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.1603 2.0789 -1.1363
5 7 2.5885 3.2871 -1.1846
6 6 2.9275 3.9632 -0.1038
7 6 3.4245 5.3805 -0.2262
8 6 2.8263 3.3698 1.1435
9 6 2.3596 2.0500 1.2039
10 6 2.2235 1.3441 2.4991
11 8 2.7715 0.2727 2.6676
12 7 1.4918 1.8900 3.4905
13 6 0.9071 3.2242 3.3092
14 6 -0.5890 3.1235 3.6361
15 6 -0.7374 2.6101 5.0669
16 6 -0.1789 1.1742 5.1848
17 1 -0.7744 0.4314 4.6540
18 6 1.2925 1.1516 4.7238
19 1 1.6286 0.1222 4.5998
20 6 2.0343 1.8104 5.9073
21 6 1.2191 1.2964 7.1273
22 7 -0.1011 0.8743 6.6342
23 6 -1.0908 0.3006 7.3870
24 1 -2.0551 0.0962 6.9459
25 6 -0.8545 -0.0183 8.7172
26 7 0.2778 0.3355 9.2876
27 14 -2.1432 -0.9496 9.6976
28 1 -1.8369 -2.4023 9.6633
29 1 -2.1334 -0.4748 11.1046
30 1 -3.4836 -0.7123 9.1042
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5138 -0.8901
33 1 -0.3633 -1.0277 -0.0005
34 1 1.8934 -0.5138 -0.8899
35 1 1.8933 -0.5138 0.8901
36 1 4.5084 5.3768 -0.3423
37 1 2.9677 5.8520 -1.0964
38 1 3.1572 5.9382 0.6713
39 1 3.0985 3.9067 2.0402
40 1 1.0391 3.5488 2.2770
41 1 1.3861 3.9339 3.9839
42 1 -1.0499 4.1076 3.5503
43 1 -1.0688 2.4294 2.9462
44 1 -0.1988 3.2734 5.7436
45 1 -1.7931 2.6030 5.3377
46 1 3.0709 1.4762 5.9488
47 1 1.9789 2.8971 5.8424
48 1 1.1029 2.0893 7.8661
49 1 1.7371 0.4473 7.5733
50 1 0.4428 0.1130 10.2172
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049558421.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:31:42
Heat of formation + Delta-G solvation = 31.588401 kcal
Electronic energy + Delta-G solvation = -31763.748582 eV
Core-core repulsion = 27791.301719 eV
Total energy + Delta-G solvation = -3972.446864 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-42.70848 -41.41483 -39.52011 -36.97274 -36.19161 -34.96536 -34.02299 -33.77186
-32.64044 -30.84787 -29.79472 -28.92609 -27.12933 -26.31304 -25.81514 -24.93670
-23.47846 -22.97663 -22.06930 -21.65391 -19.70411 -18.94289 -18.82166 -18.55529
-17.45198 -17.03505 -16.77654 -16.45820 -16.05036 -15.95178 -15.69949 -15.23892
-15.11410 -14.96366 -14.80637 -14.72270 -14.26384 -14.13494 -14.04360 -13.76695
-13.61591 -13.28050 -13.18799 -13.12218 -12.86452 -12.83494 -12.65581 -12.40895
-12.32201 -12.16892 -12.12423 -11.99233 -11.92644 -11.71292 -11.60754 -11.52777
-11.21380 -11.08606 -10.69208 -10.59630 -10.56476 -9.76262 -8.89056 -7.85594
-5.19989 -0.68602 -0.26782 1.28310 1.45392 1.47536 1.55361 1.66986
2.31765 2.48833 2.80753 2.99446 3.20201 3.33073 3.40229 3.52841
3.68540 3.83306 3.87866 3.94454 3.97566 4.01289 4.05366 4.14488
4.24751 4.27391 4.31677 4.46699 4.48738 4.52648 4.63133 4.67580
4.71447 4.80836 4.81185 4.88675 4.93143 4.94057 4.96774 5.02304
5.11851 5.16218 5.21079 5.30823 5.32920 5.38300 5.49107 5.56860
5.63586 5.74632 6.16233 6.18953 6.83311 7.09111 7.55585 7.75062
8.39942 9.24450
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.018936 B = 0.003029 C = 0.002883
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1478.347891 B = 9241.471716 C = 9709.593814
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.086 4.086
3 C 0.103 3.897
4 N -0.256 5.256
5 N -0.255 5.255
6 C 0.068 3.932
7 C -0.099 4.099
8 C -0.072 4.072
9 C -0.124 4.124
10 C 0.564 3.436
11 O -0.560 6.560
12 N -0.573 5.573
13 C 0.094 3.906
14 C -0.124 4.124
15 C -0.117 4.117
16 C 0.152 3.848
17 H 0.055 0.945
18 C 0.145 3.855
19 H 0.073 0.927
20 C -0.132 4.132
21 C 0.190 3.810
22 N -0.618 5.618
23 C -0.235 4.235
24 H 0.082 0.918
25 C -0.062 4.062
26 N -0.948 5.948
27 Si 0.972 3.028
28 H -0.292 1.292
29 H -0.295 1.295
30 H -0.267 1.267
31 H 0.045 0.955
32 H 0.065 0.935
33 H 0.078 0.922
34 H 0.097 0.903
35 H 0.083 0.917
36 H 0.097 0.903
37 H 0.087 0.913
38 H 0.111 0.889
39 H 0.190 0.810
40 H 0.104 0.896
41 H 0.099 0.901
42 H 0.103 0.897
43 H 0.062 0.938
44 H 0.058 0.942
45 H 0.047 0.953
46 H 0.070 0.930
47 H 0.087 0.913
48 H 0.013 0.987
49 H 0.011 0.989
50 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.899 12.633 -18.992 23.141
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.125 4.125
3 C -0.043 4.043
4 N -0.097 5.097
5 N -0.097 5.097
6 C -0.077 4.077
7 C -0.157 4.157
8 C -0.102 4.102
9 C -0.138 4.138
10 C 0.351 3.649
11 O -0.438 6.438
12 N -0.303 5.303
13 C -0.027 4.027
14 C -0.162 4.162
15 C -0.157 4.157
16 C 0.045 3.955
17 H 0.073 0.927
18 C 0.040 3.960
19 H 0.091 0.909
20 C -0.171 4.171
21 C 0.065 3.935
22 N -0.342 5.342
23 C -0.364 4.364
24 H 0.099 0.901
25 C -0.256 4.256
26 N -0.597 5.597
27 Si 0.801 3.199
28 H -0.219 1.219
29 H -0.222 1.222
30 H -0.192 1.192
31 H 0.064 0.936
32 H 0.084 0.916
33 H 0.097 0.903
34 H 0.116 0.884
35 H 0.102 0.898
36 H 0.116 0.884
37 H 0.106 0.894
38 H 0.129 0.871
39 H 0.207 0.793
40 H 0.122 0.878
41 H 0.117 0.883
42 H 0.122 0.878
43 H 0.081 0.919
44 H 0.077 0.923
45 H 0.066 0.934
46 H 0.089 0.911
47 H 0.106 0.894
48 H 0.031 0.969
49 H 0.029 0.971
50 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 3.967 11.994 -20.324 23.930
hybrid contribution -0.369 -1.131 2.744 2.990
sum 3.598 10.863 -17.580 20.976
Atomic orbital electron populations
1.21651 0.92516 1.03417 1.01890 1.20691 0.97824 0.89055 1.04958
1.23018 0.93832 0.98646 0.88787 1.72990 1.10517 1.02144 1.24007
1.72765 1.07269 1.01078 1.28591 1.23445 0.94988 1.00300 0.88998
1.20888 1.02677 0.86264 1.05907 1.22906 0.93835 0.92113 1.01299
1.20936 1.02398 0.96230 0.94246 1.18266 0.78795 0.84551 0.83272
1.90786 1.48024 1.23168 1.81864 1.47523 1.49799 1.18984 1.13984
1.22410 0.94188 0.82355 1.03702 1.21896 0.95529 1.02969 0.95850
1.22152 1.00683 0.96112 0.96730 1.21883 0.93411 0.95596 0.84624
0.92738 1.21411 0.96187 0.95620 0.82806 0.90896 1.23084 0.98615
1.01088 0.94344 1.21024 0.84574 0.95960 0.91983 1.44929 1.13653
1.71820 1.03835 1.19367 0.92733 1.31712 0.92556 0.90061 1.25589
0.99462 1.02357 0.98163 1.70167 1.25891 1.51667 1.11961 0.85146
0.78918 0.78120 0.77694 1.21899 1.22192 1.19156 0.93556 0.91591
0.90302 0.88449 0.89835 0.88424 0.89441 0.87077 0.79283 0.87788
0.88268 0.87819 0.91908 0.92303 0.93366 0.91132 0.89412 0.96916
0.97115 0.94451
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.83 9.89 71.98 0.71 -2.11 16
2 C -0.09 -2.04 5.97 29.85 0.18 -1.86 16
3 C 0.10 2.53 6.16 42.90 0.26 2.79 16
4 N -0.26 -6.56 11.42 -46.95 -0.54 -7.10 16
5 N -0.25 -5.79 11.41 -47.70 -0.54 -6.33 16
6 C 0.07 1.06 6.86 42.61 0.29 1.35 16
7 C -0.10 -0.68 10.19 71.23 0.73 0.05 16
8 C -0.07 -1.12 7.31 22.79 0.17 -0.95 16
9 C -0.12 -2.81 4.82 -19.83 -0.10 -2.91 16
10 C 0.56 15.78 6.61 86.87 0.57 16.35 16
11 O -0.56 -20.18 14.56 -3.76 -0.05 -20.23 16
12 N -0.57 -14.93 2.73 -797.44 -2.18 -17.10 16
13 C 0.09 1.68 5.29 86.48 0.46 2.14 16
14 C -0.12 -2.51 6.10 30.67 0.19 -2.32 16
15 C -0.12 -3.57 5.11 31.02 0.16 -3.41 16
16 C 0.15 5.78 3.74 45.59 0.17 5.95 16
17 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16
18 C 0.14 5.00 3.03 46.15 0.14 5.14 16
19 H 0.07 2.98 6.98 -2.39 -0.02 2.97 16
20 C -0.13 -4.65 6.16 31.93 0.20 -4.46 16
21 C 0.19 9.08 5.18 87.11 0.45 9.53 16
22 N -0.62 -30.25 2.89 -662.47 -1.91 -32.17 16
23 C -0.23 -12.77 10.28 84.03 0.86 -11.90 16
24 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16
25 C -0.06 -3.50 5.48 84.86 0.47 -3.03 16
26 N -0.95 -56.18 10.36 21.65 0.22 -55.96 16
27 Si 0.97 45.35 29.56 68.60 2.03 47.37 16
28 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16
29 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16
30 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16
31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16
32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
33 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16
34 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16
35 H 0.08 2.33 5.70 -2.39 -0.01 2.32 16
36 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16
37 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16
38 H 0.11 0.16 8.09 -2.39 -0.02 0.14 16
39 H 0.19 1.63 7.50 -2.91 -0.02 1.60 16
40 H 0.10 1.41 4.75 -2.39 -0.01 1.40 16
41 H 0.10 1.41 7.53 -2.38 -0.02 1.39 16
42 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16
43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16
44 H 0.06 1.89 7.10 -2.39 -0.02 1.87 16
45 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16
46 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16
47 H 0.09 2.60 6.81 -2.39 -0.02 2.58 16
48 H 0.01 0.67 7.70 -2.39 -0.02 0.65 16
49 H 0.01 0.59 7.19 -2.39 -0.02 0.57 16
50 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16
Total: -1.00 -73.14 387.49 3.88 -69.26
By element:
Atomic # 1 Polarization: 10.98 SS G_CDS: 0.94 Total: 11.93 kcal
Atomic # 6 Polarization: 4.42 SS G_CDS: 5.91 Total: 10.33 kcal
Atomic # 7 Polarization: -113.71 SS G_CDS: -4.95 Total: -118.66 kcal
Atomic # 8 Polarization: -20.18 SS G_CDS: -0.05 Total: -20.23 kcal
Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal
Total: -73.14 3.88 -69.26 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049558421.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 100.845 kcal
(2) G-P(sol) polarization free energy of solvation -73.135 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.710 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.257 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.588 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds