Wall clock time and date at job start Wed Apr 1 2020 03:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.46948 * 2 1 4 4 C 1.38545 * 120.01982 * 124.99937 * 3 2 1 5 5 C 1.40068 * 117.82001 * 180.02562 * 4 3 2 6 6 C 1.48138 * 121.14784 * 179.97438 * 5 4 3 7 7 O 1.21514 * 120.00292 * 233.47802 * 6 5 4 8 8 N 1.34776 * 119.99877 * 53.47570 * 6 5 4 9 9 C 1.45732 * 117.75937 * 355.86544 * 8 6 5 10 10 C 1.53053 * 109.56219 * 140.82066 * 9 8 6 11 11 C 1.52952 * 108.49338 * 53.79894 * 10 9 8 12 12 C 1.52927 * 109.78769 * 294.01239 * 11 10 9 13 13 H 1.09005 * 110.50995 * 292.89429 * 12 11 10 14 14 C 1.44194 * 117.76296 * 175.59346 * 8 6 5 15 15 H 1.08997 * 109.22478 * 333.67721 * 14 8 6 16 16 C 1.54067 * 111.75949 * 93.83079 * 14 8 6 17 17 C 1.54065 * 103.73945 * 153.26226 * 16 14 8 18 18 N 1.46883 * 107.70676 * 342.86694 * 17 16 14 19 19 C 1.36939 * 125.58164 * 177.04660 * 18 17 16 20 20 H 1.08002 * 119.99620 * 185.95687 * 19 18 17 21 21 C 1.38809 * 120.00011 * 5.95068 * 19 18 17 22 22 N 1.31620 * 120.00114 * 6.22532 * 21 19 18 23 23 Si 1.86796 * 119.99985 * 186.22120 * 21 19 18 24 24 H 1.48504 * 109.47022 * 85.00028 * 23 21 19 25 25 H 1.48500 * 109.47064 * 204.99507 * 23 21 19 26 26 H 1.48494 * 109.47314 * 324.99906 * 23 21 19 27 27 C 1.39763 * 117.71006 * 0.25517 * 5 4 3 28 28 C 1.50700 * 120.17765 * 179.72418 * 27 5 4 29 29 N 1.31896 * 119.65308 * 359.48168 * 27 5 4 30 30 N 1.28280 * 122.32713 * 0.54126 * 29 27 5 31 31 H 1.09005 * 109.47103 * 300.00178 * 1 2 3 32 32 H 1.08997 * 109.47169 * 59.99983 * 1 2 3 33 33 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47152 * 240.00012 * 2 1 3 35 35 H 1.08998 * 109.47029 * 119.99481 * 2 1 3 36 36 H 1.07998 * 121.09107 * 0.02562 * 4 3 2 37 37 H 1.09005 * 109.45479 * 260.84336 * 9 8 6 38 38 H 1.08998 * 109.46184 * 20.79367 * 9 8 6 39 39 H 1.09000 * 109.63819 * 173.49870 * 10 9 8 40 40 H 1.08996 * 109.63091 * 293.90073 * 10 9 8 41 41 H 1.08995 * 109.41995 * 54.10669 * 11 10 9 42 42 H 1.09003 * 109.41404 * 173.91664 * 11 10 9 43 43 H 1.09003 * 110.57626 * 34.70265 * 16 14 8 44 44 H 1.08994 * 110.70057 * 271.88664 * 16 14 8 45 45 H 1.08996 * 109.81156 * 223.31608 * 17 16 14 46 46 H 1.09001 * 109.86348 * 102.45022 * 17 16 14 47 47 H 0.97000 * 120.00233 * 179.97438 * 22 21 19 48 48 H 1.09007 * 109.47131 * 94.29578 * 28 27 5 49 49 H 1.08997 * 109.47493 * 214.29950 * 28 27 5 50 50 H 1.09000 * 109.47218 * 334.30183 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9120 1.8450 0.9827 5 6 3.3491 3.1750 0.9389 6 6 4.2892 3.7064 1.9530 7 8 4.0096 4.7140 2.5719 8 7 5.4547 3.0722 2.1891 9 6 5.7000 1.8190 1.4869 10 6 7.1683 1.7492 1.0608 11 6 8.0429 1.9790 2.2943 12 6 7.8516 3.4074 2.8058 13 1 8.2473 4.1262 2.0882 14 6 6.3763 3.6830 3.1148 15 1 6.2086 4.7599 3.1301 16 6 6.1954 3.1379 4.5444 17 6 7.5845 3.3223 5.1848 18 7 8.5531 3.5262 4.0996 19 6 9.8883 3.7839 4.2614 20 1 10.5017 4.0144 3.4029 21 6 10.4533 3.7491 5.5288 22 7 9.7367 3.3497 6.5581 23 14 12.2307 4.2689 5.7737 24 1 12.2969 5.7431 5.9401 25 1 12.7768 3.6089 6.9868 26 1 13.0314 3.8680 4.5891 27 6 2.8629 3.9853 -0.0909 28 6 3.2917 5.4268 -0.1872 29 7 2.0306 3.4805 -0.9808 30 7 1.6342 2.2613 -0.9352 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 3.2498 1.1722 1.7570 37 1 5.4736 0.9822 2.1478 38 1 5.0629 1.7667 0.6041 39 1 7.3810 0.7669 0.6389 40 1 7.3705 2.5191 0.3162 41 1 7.7602 1.2735 3.0756 42 1 9.0893 1.8257 2.0302 43 1 5.9218 2.0830 4.5203 44 1 5.4450 3.7149 5.0846 45 1 7.8498 2.4317 5.7543 46 1 7.5769 4.1921 5.8416 47 1 10.1316 3.3250 7.4437 48 1 4.1430 5.5083 -0.8632 49 1 2.4658 6.0269 -0.5690 50 1 3.5767 5.7879 0.8010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049619894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:59 Heat of formation + Delta-G solvation = 47.978296 kcal Electronic energy + Delta-G solvation = -31369.492374 eV Core-core repulsion = 27397.756230 eV Total energy + Delta-G solvation = -3971.736144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.79398 -40.34141 -38.14165 -35.76068 -35.44492 -33.87077 -32.78795 -32.36400 -31.73347 -29.18878 -28.55071 -28.06267 -26.35680 -24.59713 -24.52453 -23.61938 -22.80216 -22.06614 -20.69087 -20.05701 -18.41626 -17.91378 -17.52370 -17.00196 -16.29153 -16.02494 -15.65012 -15.04173 -14.96023 -14.77687 -14.51291 -14.33552 -14.12544 -13.95229 -13.74210 -13.43823 -13.23737 -13.01503 -12.74524 -12.59009 -12.38176 -12.19186 -12.13840 -12.07402 -11.57315 -11.53959 -11.20682 -11.08305 -11.04731 -10.87858 -10.76317 -10.75118 -10.55551 -10.21946 -10.15570 -10.11144 -9.75122 -9.71975 -9.65571 -9.56664 -8.67621 -8.54996 -6.93132 -5.77857 -3.13961 0.19473 0.54550 2.38577 2.80442 3.18570 3.36251 3.41428 3.42902 3.60283 3.91406 4.06645 4.18017 4.41367 4.43023 4.64371 4.74846 4.80635 4.88290 4.95379 5.12269 5.17398 5.20561 5.25457 5.29823 5.33796 5.39604 5.42755 5.50021 5.52023 5.55696 5.63039 5.68886 5.75117 5.80354 5.86789 5.93539 5.96093 6.02965 6.10068 6.19431 6.24894 6.42868 6.48119 6.62810 6.81557 6.95474 7.24150 7.45463 7.58554 7.74918 7.96532 8.18247 8.41036 9.13334 9.73548 10.37872 11.32509 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.002737 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.097001 B =10227.215015 C =10575.556699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.067 4.067 3 C 0.061 3.939 4 C -0.084 4.084 5 C -0.114 4.114 6 C 0.554 3.446 7 O -0.518 6.518 8 N -0.572 5.572 9 C 0.101 3.899 10 C -0.132 4.132 11 C -0.131 4.131 12 C 0.162 3.838 13 H 0.056 0.944 14 C 0.136 3.864 15 H 0.094 0.906 16 C -0.149 4.149 17 C 0.176 3.824 18 N -0.594 5.594 19 C -0.230 4.230 20 H 0.078 0.922 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 0.912 3.088 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.109 3.891 28 C -0.118 4.118 29 N -0.239 5.239 30 N -0.226 5.226 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.156 0.844 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.038 0.962 47 H 0.253 0.747 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.681 -6.872 -13.174 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.083 4.083 4 C -0.113 4.113 5 C -0.129 4.129 6 C 0.339 3.661 7 O -0.394 6.394 8 N -0.302 5.302 9 C -0.021 4.021 10 C -0.170 4.170 11 C -0.171 4.171 12 C 0.053 3.947 13 H 0.074 0.926 14 C 0.032 3.968 15 H 0.112 0.888 16 C -0.189 4.189 17 C 0.051 3.949 18 N -0.318 5.318 19 C -0.358 4.358 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.742 3.258 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.035 4.035 28 C -0.176 4.176 29 N -0.081 5.081 30 N -0.068 5.068 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.174 0.826 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.104 0.896 49 H 0.105 0.895 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.514 -6.068 -13.959 21.734 hybrid contribution 1.843 -0.179 1.559 2.420 sum -13.672 -6.247 -12.400 19.486 Atomic orbital electron populations 1.21714 0.93618 1.02234 1.02909 1.20462 0.97401 0.88857 1.03924 1.22832 0.94469 0.98751 0.92265 1.22576 0.95260 0.94763 0.98745 1.21119 0.99522 0.94782 0.97451 1.18096 0.81824 0.83956 0.82199 1.90794 1.74752 1.24644 1.49189 1.47047 1.17062 1.22926 1.43174 1.21756 0.98506 0.85755 0.96122 1.21853 0.93661 1.02089 0.99429 1.22147 0.99445 0.99923 0.95621 1.20898 0.88991 0.94527 0.90266 0.92592 1.21200 0.89281 0.98144 0.88211 0.88759 1.22989 1.00740 0.99995 0.95132 1.21081 0.82913 1.01043 0.89816 1.44492 1.04927 1.83701 0.98680 1.18982 0.82764 1.40788 0.93306 0.90425 1.24808 0.98243 1.01304 0.95780 1.69956 1.35522 1.51846 0.99141 0.86143 0.84100 0.78262 0.77258 1.21489 1.21696 1.20717 1.22984 0.92188 0.98423 0.89950 1.20958 1.02653 0.88435 1.05521 1.73043 1.08762 1.05435 1.20829 1.72745 1.17211 0.97483 1.19384 0.92751 0.91356 0.91788 0.89211 0.89743 0.82629 0.91339 0.90627 0.90903 0.91615 0.91804 0.91572 0.92457 0.91758 0.92572 0.94359 0.93647 0.89627 0.89521 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.78 37.16 0.36 -0.60 16 2 C -0.07 -0.44 6.35 -27.88 -0.18 -0.62 16 3 C 0.06 0.60 6.25 -82.46 -0.52 0.09 16 4 C -0.08 -0.83 7.37 -38.78 -0.29 -1.12 16 5 C -0.11 -1.40 4.67 -104.58 -0.49 -1.89 16 6 C 0.55 8.03 6.59 -12.20 -0.08 7.95 16 7 O -0.52 -9.07 14.45 5.35 0.08 -8.99 16 8 N -0.57 -8.09 2.80 -168.57 -0.47 -8.56 16 9 C 0.10 1.13 5.04 -4.43 -0.02 1.11 16 10 C -0.13 -1.58 6.10 -26.73 -0.16 -1.74 16 11 C -0.13 -2.15 5.31 -26.79 -0.14 -2.29 16 12 C 0.16 3.09 3.29 -67.21 -0.22 2.87 16 13 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 14 C 0.14 2.37 2.70 -68.48 -0.19 2.18 16 15 H 0.09 1.81 7.13 -51.93 -0.37 1.44 16 16 C -0.15 -2.78 6.44 -25.62 -0.17 -2.94 16 17 C 0.18 4.13 5.41 -3.28 -0.02 4.11 16 18 N -0.59 -14.23 2.94 -163.74 -0.48 -14.71 16 19 C -0.23 -6.11 10.26 -15.06 -0.15 -6.26 16 20 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 21 C 0.00 -0.12 5.46 -17.43 -0.10 -0.22 16 22 N -0.92 -26.16 10.43 55.49 0.58 -25.58 16 23 Si 0.91 21.53 29.56 -169.99 -5.02 16.51 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.11 1.37 6.91 -81.99 -0.57 0.81 16 28 C -0.12 -1.30 9.91 36.01 0.36 -0.94 16 29 N -0.24 -3.17 11.42 33.81 0.39 -2.78 16 30 N -0.23 -2.78 11.04 33.58 0.37 -2.41 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.52 7.96 -51.93 -0.41 0.11 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.40 7.92 -51.93 -0.41 -0.02 16 36 H 0.16 1.18 7.16 -52.49 -0.38 0.81 16 37 H 0.07 0.69 7.95 -51.93 -0.41 0.28 16 38 H 0.08 0.73 5.14 -51.93 -0.27 0.47 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.12 8.02 -51.93 -0.42 0.71 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.06 1.46 7.14 -51.93 -0.37 1.09 16 46 H 0.04 1.00 7.76 -51.93 -0.40 0.60 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 48 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.10 1.26 5.66 -51.93 -0.29 0.97 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -31.12 389.33 -9.19 -40.31 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.93 Total: -0.12 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -2.56 Total: 0.48 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.38 Total: -54.05 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.12 -9.19 -40.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049619894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.287 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds