Wall clock time and date at job start Wed Apr 1 2020 03:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.46948 * 2 1 4 4 C 1.38545 * 120.01982 * 124.99937 * 3 2 1 5 5 C 1.40068 * 117.82001 * 180.02562 * 4 3 2 6 6 C 1.48138 * 121.14784 * 179.97438 * 5 4 3 7 7 O 1.21514 * 120.00292 * 233.47802 * 6 5 4 8 8 N 1.34776 * 119.99877 * 53.47570 * 6 5 4 9 9 C 1.45732 * 117.75937 * 355.86544 * 8 6 5 10 10 C 1.53053 * 109.56219 * 140.82066 * 9 8 6 11 11 C 1.52952 * 108.49338 * 53.79894 * 10 9 8 12 12 C 1.52927 * 109.78769 * 294.01239 * 11 10 9 13 13 H 1.09005 * 110.50995 * 292.89429 * 12 11 10 14 14 C 1.44194 * 117.76296 * 175.59346 * 8 6 5 15 15 H 1.08997 * 109.22478 * 333.67721 * 14 8 6 16 16 C 1.54067 * 111.75949 * 93.83079 * 14 8 6 17 17 C 1.54065 * 103.73945 * 153.26226 * 16 14 8 18 18 N 1.46883 * 107.70676 * 342.86694 * 17 16 14 19 19 C 1.36939 * 125.58164 * 177.04660 * 18 17 16 20 20 H 1.08002 * 119.99620 * 185.95687 * 19 18 17 21 21 C 1.38809 * 120.00011 * 5.95068 * 19 18 17 22 22 N 1.31620 * 120.00114 * 6.22532 * 21 19 18 23 23 Si 1.86796 * 119.99985 * 186.22120 * 21 19 18 24 24 H 1.48504 * 109.47022 * 85.00028 * 23 21 19 25 25 H 1.48500 * 109.47064 * 204.99507 * 23 21 19 26 26 H 1.48494 * 109.47314 * 324.99906 * 23 21 19 27 27 C 1.39763 * 117.71006 * 0.25517 * 5 4 3 28 28 C 1.50700 * 120.17765 * 179.72418 * 27 5 4 29 29 N 1.31896 * 119.65308 * 359.48168 * 27 5 4 30 30 N 1.28280 * 122.32713 * 0.54126 * 29 27 5 31 31 H 1.09005 * 109.47103 * 300.00178 * 1 2 3 32 32 H 1.08997 * 109.47169 * 59.99983 * 1 2 3 33 33 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47152 * 240.00012 * 2 1 3 35 35 H 1.08998 * 109.47029 * 119.99481 * 2 1 3 36 36 H 1.07998 * 121.09107 * 0.02562 * 4 3 2 37 37 H 1.09005 * 109.45479 * 260.84336 * 9 8 6 38 38 H 1.08998 * 109.46184 * 20.79367 * 9 8 6 39 39 H 1.09000 * 109.63819 * 173.49870 * 10 9 8 40 40 H 1.08996 * 109.63091 * 293.90073 * 10 9 8 41 41 H 1.08995 * 109.41995 * 54.10669 * 11 10 9 42 42 H 1.09003 * 109.41404 * 173.91664 * 11 10 9 43 43 H 1.09003 * 110.57626 * 34.70265 * 16 14 8 44 44 H 1.08994 * 110.70057 * 271.88664 * 16 14 8 45 45 H 1.08996 * 109.81156 * 223.31608 * 17 16 14 46 46 H 1.09001 * 109.86348 * 102.45022 * 17 16 14 47 47 H 0.97000 * 120.00233 * 179.97438 * 22 21 19 48 48 H 1.09007 * 109.47131 * 94.29578 * 28 27 5 49 49 H 1.08997 * 109.47493 * 214.29950 * 28 27 5 50 50 H 1.09000 * 109.47218 * 334.30183 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9120 1.8450 0.9827 5 6 3.3491 3.1750 0.9389 6 6 4.2892 3.7064 1.9530 7 8 4.0096 4.7140 2.5719 8 7 5.4547 3.0722 2.1891 9 6 5.7000 1.8190 1.4869 10 6 7.1683 1.7492 1.0608 11 6 8.0429 1.9790 2.2943 12 6 7.8516 3.4074 2.8058 13 1 8.2473 4.1262 2.0882 14 6 6.3763 3.6830 3.1148 15 1 6.2086 4.7599 3.1301 16 6 6.1954 3.1379 4.5444 17 6 7.5845 3.3223 5.1848 18 7 8.5531 3.5262 4.0996 19 6 9.8883 3.7839 4.2614 20 1 10.5017 4.0144 3.4029 21 6 10.4533 3.7491 5.5288 22 7 9.7367 3.3497 6.5581 23 14 12.2307 4.2689 5.7737 24 1 12.2969 5.7431 5.9401 25 1 12.7768 3.6089 6.9868 26 1 13.0314 3.8680 4.5891 27 6 2.8629 3.9853 -0.0909 28 6 3.2917 5.4268 -0.1872 29 7 2.0306 3.4805 -0.9808 30 7 1.6342 2.2613 -0.9352 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 3.2498 1.1722 1.7570 37 1 5.4736 0.9822 2.1478 38 1 5.0629 1.7667 0.6041 39 1 7.3810 0.7669 0.6389 40 1 7.3705 2.5191 0.3162 41 1 7.7602 1.2735 3.0756 42 1 9.0893 1.8257 2.0302 43 1 5.9218 2.0830 4.5203 44 1 5.4450 3.7149 5.0846 45 1 7.8498 2.4317 5.7543 46 1 7.5769 4.1921 5.8416 47 1 10.1316 3.3250 7.4437 48 1 4.1430 5.5083 -0.8632 49 1 2.4658 6.0269 -0.5690 50 1 3.5767 5.7879 0.8010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049619894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:58 Heat of formation + Delta-G solvation = 29.721146 kcal Electronic energy + Delta-G solvation = -31370.284064 eV Core-core repulsion = 27397.756230 eV Total energy + Delta-G solvation = -3972.527834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.74967 -41.51220 -39.52772 -37.09395 -36.21996 -34.96861 -34.08156 -33.96645 -32.56273 -30.91292 -29.98141 -28.93863 -27.40966 -26.31710 -25.70516 -24.42379 -23.75053 -23.24015 -22.14105 -21.50813 -19.69620 -18.88472 -18.80038 -18.58353 -17.41823 -16.88876 -16.79989 -16.55386 -16.08565 -16.03248 -15.87170 -15.24920 -15.18176 -15.06158 -14.94276 -14.64759 -14.27347 -14.12103 -13.97569 -13.78893 -13.65298 -13.30972 -13.18292 -13.17548 -12.83437 -12.71093 -12.69910 -12.40638 -12.39114 -12.10935 -12.07763 -12.01122 -11.84990 -11.70493 -11.60848 -11.51649 -11.20591 -11.08464 -10.71442 -10.60577 -10.54133 -9.79052 -8.90785 -7.84782 -5.22047 -0.69296 -0.26931 1.28004 1.45972 1.48339 1.55533 1.66882 2.31525 2.48990 2.81676 2.96778 3.22317 3.32461 3.37409 3.52001 3.67519 3.79356 3.84626 3.91229 3.97222 4.01943 4.08024 4.14931 4.29549 4.38753 4.40571 4.50309 4.55020 4.55519 4.56789 4.61256 4.65115 4.71105 4.77800 4.89773 4.94531 5.00340 5.02772 5.09423 5.14505 5.16815 5.22000 5.30599 5.40860 5.45039 5.48263 5.56336 5.61863 5.74519 6.11596 6.18722 6.82748 7.08384 7.55435 7.75190 8.38864 9.24438 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.002737 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.097001 B =10227.215015 C =10575.556699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.067 4.067 3 C 0.067 3.933 4 C -0.068 4.068 5 C -0.126 4.126 6 C 0.560 3.440 7 O -0.554 6.554 8 N -0.569 5.569 9 C 0.097 3.903 10 C -0.121 4.121 11 C -0.120 4.120 12 C 0.157 3.843 13 H 0.051 0.949 14 C 0.154 3.846 15 H 0.071 0.929 16 C -0.133 4.133 17 C 0.188 3.812 18 N -0.614 5.614 19 C -0.236 4.236 20 H 0.083 0.917 21 C -0.063 4.063 22 N -0.949 5.949 23 Si 0.975 3.025 24 H -0.289 1.289 25 H -0.296 1.296 26 H -0.267 1.267 27 C 0.101 3.899 28 C -0.115 4.115 29 N -0.260 5.260 30 N -0.246 5.246 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.187 0.813 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.026 0.974 46 H -0.003 1.003 47 H 0.246 0.754 48 H 0.097 0.903 49 H 0.095 0.905 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.484 -9.323 -15.225 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 C -0.078 4.078 4 C -0.097 4.097 5 C -0.141 4.141 6 C 0.347 3.653 7 O -0.432 6.432 8 N -0.299 5.299 9 C -0.025 4.025 10 C -0.160 4.160 11 C -0.160 4.160 12 C 0.050 3.950 13 H 0.069 0.931 14 C 0.049 3.951 15 H 0.089 0.911 16 C -0.172 4.172 17 C 0.063 3.937 18 N -0.338 5.338 19 C -0.364 4.364 20 H 0.101 0.899 21 C -0.256 4.256 22 N -0.597 5.597 23 Si 0.803 3.197 24 H -0.216 1.216 25 H -0.222 1.222 26 H -0.192 1.192 27 C -0.044 4.044 28 C -0.173 4.173 29 N -0.102 5.102 30 N -0.087 5.087 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.205 0.795 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.044 0.956 46 H 0.015 0.985 47 H 0.056 0.944 48 H 0.115 0.885 49 H 0.113 0.887 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.340 -8.538 -16.088 24.468 hybrid contribution 2.033 0.568 2.147 3.011 sum -14.306 -7.971 -13.941 21.507 Atomic orbital electron populations 1.21713 0.93881 1.03177 1.01714 1.20659 0.97070 0.86828 1.05991 1.23364 0.93532 0.99790 0.91099 1.22928 0.94069 0.93884 0.98865 1.20903 1.00013 0.96034 0.97122 1.18353 0.81817 0.83220 0.81954 1.90785 1.75576 1.26297 1.50580 1.46992 1.16290 1.23920 1.42680 1.22073 0.98361 0.84715 0.97303 1.21806 0.93021 1.04074 0.97065 1.21918 0.99768 0.96987 0.97368 1.21100 0.89403 0.96414 0.88119 0.93100 1.20685 0.88992 0.97130 0.88284 0.91075 1.22786 0.97518 1.01415 0.95504 1.20758 0.85628 0.97728 0.89619 1.44722 1.04584 1.83722 1.00797 1.19340 0.84147 1.39508 0.93445 0.89946 1.25601 1.02089 1.02198 0.95738 1.70163 1.36938 1.53483 0.99135 0.85149 0.79894 0.77416 0.77197 1.21639 1.22232 1.19200 1.23107 0.92282 0.98862 0.90192 1.20927 1.03445 0.88244 1.04701 1.73027 1.09381 1.06253 1.21506 1.72686 1.17803 0.97549 1.20708 0.93540 0.93002 0.89804 0.87832 0.86898 0.79549 0.88926 0.88192 0.87564 0.91414 0.92871 0.92996 0.90287 0.91675 0.95634 0.98477 0.94433 0.88470 0.88665 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.78 71.98 0.70 -0.79 16 2 C -0.07 -0.58 6.35 29.85 0.19 -0.39 16 3 C 0.07 1.08 6.25 42.62 0.27 1.35 16 4 C -0.07 -1.07 7.37 22.79 0.17 -0.91 16 5 C -0.13 -2.81 4.67 -19.84 -0.09 -2.90 16 6 C 0.56 15.33 6.59 86.87 0.57 15.90 16 7 O -0.55 -19.38 14.45 -3.76 -0.05 -19.43 16 8 N -0.57 -14.83 2.80 -805.52 -2.25 -17.09 16 9 C 0.10 1.74 5.04 86.54 0.44 2.18 16 10 C -0.12 -2.44 6.10 30.60 0.19 -2.26 16 11 C -0.12 -3.74 5.31 30.55 0.16 -3.57 16 12 C 0.16 5.95 3.29 44.82 0.15 6.10 16 13 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 14 C 0.15 5.33 2.70 45.86 0.12 5.45 16 15 H 0.07 2.80 7.13 -2.39 -0.02 2.78 16 16 C -0.13 -4.95 6.44 31.32 0.20 -4.75 16 17 C 0.19 9.19 5.41 86.67 0.47 9.65 16 18 N -0.61 -30.19 2.94 -671.95 -1.97 -32.16 16 19 C -0.24 -12.76 10.26 84.03 0.86 -11.89 16 20 H 0.08 4.27 7.84 -2.91 -0.02 4.24 16 21 C -0.06 -3.51 5.46 84.86 0.46 -3.05 16 22 N -0.95 -56.27 10.43 21.65 0.23 -56.04 16 23 Si 0.97 45.12 29.56 68.60 2.03 47.15 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 27 C 0.10 2.40 6.91 42.92 0.30 2.69 16 28 C -0.12 -2.50 9.91 71.24 0.71 -1.79 16 29 N -0.26 -6.56 11.42 -46.94 -0.54 -7.09 16 30 N -0.25 -5.53 11.04 -47.69 -0.53 -6.06 16 31 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.05 0.70 7.96 -2.39 -0.02 0.68 16 33 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 0.40 7.92 -2.39 -0.02 0.38 16 36 H 0.19 1.75 7.16 -2.91 -0.02 1.73 16 37 H 0.09 1.32 7.95 -2.38 -0.02 1.30 16 38 H 0.10 1.41 5.14 -2.39 -0.01 1.40 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.05 1.77 8.02 -2.39 -0.02 1.75 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.03 1.39 7.14 -2.39 -0.02 1.37 16 46 H 0.00 -0.17 7.76 -2.39 -0.02 -0.19 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 48 H 0.10 1.81 8.14 -2.38 -0.02 1.80 16 49 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.08 2.10 5.66 -2.39 -0.01 2.09 16 Total: -1.00 -72.12 389.33 3.71 -68.41 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.94 Total: 11.30 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 5.86 Total: 11.02 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -5.06 Total: -118.44 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.05 Total: -19.43 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -72.12 3.71 -68.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049619894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.128 kcal (2) G-P(sol) polarization free energy of solvation -72.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds