Wall clock time and date at job start Wed Apr 1 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50703 * 109.46965 * 2 1 4 4 C 1.38543 * 120.01390 * 125.28171 * 3 2 1 5 5 C 1.40078 * 117.81784 * 180.26054 * 4 3 2 6 6 C 1.48129 * 121.14680 * 179.73969 * 5 4 3 7 7 O 1.21517 * 119.99959 * 233.67750 * 6 5 4 8 8 N 1.34782 * 119.99974 * 53.67787 * 6 5 4 9 9 C 1.47850 * 122.22536 * 354.76058 * 8 6 5 10 10 C 1.52718 * 111.05608 * 127.49065 * 9 8 6 11 11 C 1.53868 * 111.52667 * 48.53217 * 10 9 8 12 12 C 1.51082 * 107.34322 * 303.07254 * 11 10 9 13 13 H 1.08997 * 108.73525 * 309.14695 * 12 11 10 14 14 C 1.45721 * 122.22470 * 174.73225 * 8 6 5 15 15 H 1.09001 * 111.64076 * 119.17311 * 14 8 6 16 16 C 1.53431 * 116.37551 * 350.12943 * 14 8 6 17 17 C 1.55481 * 101.67005 * 207.26812 * 16 14 8 18 18 N 1.45023 * 119.19343 * 183.88574 * 12 11 10 19 19 C 1.36945 * 126.56357 * 28.79501 * 18 12 11 20 20 H 1.08000 * 119.99865 * 0.02562 * 19 18 12 21 21 C 1.38810 * 119.99983 * 180.02562 * 19 18 12 22 22 N 1.31618 * 120.00046 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00107 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47075 * 59.99637 * 23 21 19 25 25 H 1.48496 * 109.47342 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47056 * 300.00155 * 23 21 19 27 27 C 1.39765 * 117.70482 * 359.47369 * 5 4 3 28 28 C 1.50700 * 120.16983 * 180.24872 * 27 5 4 29 29 N 1.31892 * 119.65615 * 0.26592 * 27 5 4 30 30 N 1.28283 * 122.33314 * 0.02562 * 29 27 5 31 31 H 1.09000 * 109.46616 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46754 * 299.99920 * 1 2 3 33 33 H 1.08998 * 109.46844 * 60.00119 * 1 2 3 34 34 H 1.09005 * 109.47022 * 240.00241 * 2 1 3 35 35 H 1.08994 * 109.47430 * 120.00304 * 2 1 3 36 36 H 1.08003 * 121.09222 * 0.02562 * 4 3 2 37 37 H 1.09003 * 109.15910 * 247.89132 * 9 8 6 38 38 H 1.08993 * 109.16197 * 7.13456 * 9 8 6 39 39 H 1.09004 * 109.06931 * 288.00397 * 10 9 8 40 40 H 1.08999 * 109.07225 * 169.06301 * 10 9 8 41 41 H 1.09001 * 109.88433 * 183.60746 * 11 10 9 42 42 H 1.09001 * 109.88073 * 62.53034 * 11 10 9 43 43 H 1.08997 * 110.98741 * 89.17617 * 16 14 8 44 44 H 1.09000 * 110.98860 * 325.35876 * 16 14 8 45 45 H 1.09003 * 109.95828 * 263.21601 * 17 16 14 46 46 H 1.08996 * 109.98835 * 141.99469 * 17 16 14 47 47 H 0.97003 * 120.00080 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.46906 * 85.62942 * 28 27 5 49 49 H 1.09006 * 109.46795 * 205.61701 * 28 27 5 50 50 H 1.08996 * 109.47134 * 325.62415 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9167 1.8433 0.9793 5 6 3.3496 3.1749 0.9387 6 6 4.2902 3.7059 1.9525 7 8 4.0071 4.7088 2.5775 8 7 5.4599 3.0767 2.1815 9 6 5.8049 1.7933 1.5336 10 6 7.1659 1.8744 0.8456 11 6 8.2335 2.4774 1.7753 12 6 7.7364 3.8362 2.2102 13 1 7.4416 4.4007 1.3257 14 6 6.4689 3.6165 3.0838 15 1 6.6703 2.9387 3.9133 16 6 6.2406 5.0494 3.5827 17 6 7.6962 5.5229 3.8557 18 7 8.5902 4.6720 3.0321 19 6 9.9596 4.6755 3.0454 20 1 10.5076 4.0079 2.3971 21 6 10.6432 5.5372 3.8921 22 7 9.9754 6.3512 4.6819 23 14 12.5111 5.5425 3.9097 24 1 13.0179 5.8908 2.5579 25 1 12.9941 6.5456 4.8924 26 1 13.0064 4.1958 4.2922 27 6 2.8681 3.9835 -0.0945 28 6 3.3021 5.4232 -0.1944 29 7 2.0316 3.4802 -0.9813 30 7 1.6344 2.2613 -0.9353 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8935 -0.5138 0.8899 36 1 3.2580 1.1691 1.7510 37 1 5.8319 1.0074 2.2885 38 1 5.0438 1.5510 0.7920 39 1 7.0779 2.4956 -0.0457 40 1 7.4760 0.8720 0.5503 41 1 9.1763 2.5819 1.2384 42 1 8.3710 1.8367 2.6463 43 1 5.6503 5.0543 4.4989 44 1 5.7693 5.6604 2.8129 45 1 7.9353 5.4007 4.9121 46 1 7.8081 6.5682 3.5676 47 1 10.4531 6.9536 5.2733 48 1 4.2426 5.4819 -0.7422 49 1 2.5390 5.9970 -0.7204 50 1 3.4385 5.8319 0.8067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049619904.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:07 Heat of formation + Delta-G solvation = 55.187470 kcal Electronic energy + Delta-G solvation = -31518.247207 eV Core-core repulsion = 27546.823676 eV Total energy + Delta-G solvation = -3971.423531 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.68602 -40.24883 -37.98284 -35.72823 -35.45279 -33.80909 -32.81237 -32.28846 -31.68013 -29.10252 -28.38412 -28.03131 -26.34969 -24.63737 -24.46169 -23.60557 -22.62956 -21.62847 -21.00176 -19.81435 -19.24309 -17.86474 -17.14033 -16.54825 -16.08801 -15.93170 -15.53633 -15.24196 -15.01418 -14.72877 -14.47571 -14.28581 -14.25883 -13.80750 -13.61982 -13.40885 -13.19430 -12.98078 -12.58268 -12.57031 -12.44106 -12.33880 -12.15077 -11.96121 -11.69882 -11.56626 -11.26317 -11.08380 -10.88938 -10.84983 -10.72595 -10.60928 -10.28729 -10.16517 -10.13474 -10.07365 -9.94553 -9.69112 -9.67684 -9.21955 -8.65022 -8.43883 -6.89563 -5.75070 -3.09908 0.23865 0.57741 2.46897 2.81987 3.22840 3.37314 3.41841 3.43391 3.63458 3.93999 4.10760 4.20120 4.43354 4.45713 4.65627 4.67955 4.82517 4.88028 4.93496 5.10793 5.18591 5.23442 5.24239 5.31714 5.32255 5.45714 5.48880 5.49234 5.53305 5.64380 5.65066 5.71092 5.74718 5.83645 5.87139 5.95104 5.96438 6.09522 6.12000 6.18446 6.27679 6.43197 6.60453 6.64823 6.77148 7.02863 7.38773 7.52836 7.58862 7.77760 8.05651 8.19505 8.44673 9.13903 9.77684 10.44845 11.36838 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021564 B = 0.002849 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.121264 B = 9824.459864 C =10349.986777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.067 4.067 3 C 0.060 3.940 4 C -0.088 4.088 5 C -0.113 4.113 6 C 0.565 3.435 7 O -0.511 6.511 8 N -0.586 5.586 9 C 0.102 3.898 10 C -0.129 4.129 11 C -0.116 4.116 12 C 0.160 3.840 13 H 0.017 0.983 14 C 0.114 3.886 15 H 0.085 0.915 16 C -0.129 4.129 17 C 0.172 3.828 18 N -0.591 5.591 19 C -0.229 4.229 20 H 0.078 0.922 21 C -0.005 4.005 22 N -0.919 5.919 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.111 3.889 28 C -0.117 4.117 29 N -0.239 5.239 30 N -0.227 5.227 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.041 0.959 47 H 0.254 0.746 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.096 -13.492 -8.118 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.084 4.084 4 C -0.117 4.117 5 C -0.128 4.128 6 C 0.350 3.650 7 O -0.386 6.386 8 N -0.318 5.318 9 C -0.020 4.020 10 C -0.168 4.168 11 C -0.154 4.154 12 C 0.051 3.949 13 H 0.034 0.966 14 C 0.010 3.990 15 H 0.103 0.897 16 C -0.167 4.167 17 C 0.048 3.952 18 N -0.316 5.316 19 C -0.357 4.357 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.566 5.566 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.034 4.034 28 C -0.175 4.175 29 N -0.081 5.081 30 N -0.069 5.069 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.172 0.828 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.976 -12.532 -9.009 22.214 hybrid contribution 1.950 -0.347 1.319 2.380 sum -14.026 -12.879 -7.690 20.536 Atomic orbital electron populations 1.21712 0.93636 1.02185 1.02937 1.20453 0.97399 0.88916 1.03812 1.22819 0.94530 0.98736 0.92350 1.22512 0.95573 0.94725 0.98898 1.21224 0.99463 0.94711 0.97372 1.17840 0.81038 0.83874 0.82209 1.90817 1.74579 1.24439 1.48807 1.47961 1.16222 1.23153 1.44431 1.21951 0.97782 0.85065 0.97239 1.21900 0.94152 1.01620 0.99152 1.21432 0.97864 0.97181 0.98942 1.20744 0.89770 0.91187 0.93228 0.96564 1.22537 0.87339 0.96746 0.92370 0.89697 1.22948 0.99160 0.93452 1.01168 1.21753 0.83261 0.94014 0.96185 1.44067 1.01462 1.40953 1.45094 1.18927 0.79701 1.18132 1.18974 0.90389 1.24805 0.98002 0.98625 0.98773 1.69926 1.33610 1.25765 1.27313 0.86226 0.85138 0.77233 0.77294 1.21177 1.21579 1.21158 1.23006 0.92067 0.98501 0.89817 1.20945 1.02463 0.88433 1.05658 1.73048 1.08721 1.05390 1.20900 1.72746 1.17435 0.97508 1.19250 0.91831 0.92754 0.91338 0.89267 0.89845 0.82782 0.90872 0.90508 0.91829 0.90670 0.91239 0.91594 0.91738 0.90456 0.92399 0.94115 0.93588 0.89556 0.89606 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.78 37.16 0.36 -0.60 16 2 C -0.07 -0.43 6.35 -27.88 -0.18 -0.61 16 3 C 0.06 0.60 6.25 -82.45 -0.52 0.08 16 4 C -0.09 -0.87 7.31 -38.78 -0.28 -1.16 16 5 C -0.11 -1.44 5.01 -104.58 -0.52 -1.96 16 6 C 0.56 8.41 6.65 -12.20 -0.08 8.33 16 7 O -0.51 -9.06 12.22 5.35 0.07 -8.99 16 8 N -0.59 -8.40 2.91 -165.00 -0.48 -8.88 16 9 C 0.10 1.11 5.62 -3.45 -0.02 1.09 16 10 C -0.13 -1.52 5.92 -26.42 -0.16 -1.68 16 11 C -0.12 -1.84 5.45 -27.24 -0.15 -1.99 16 12 C 0.16 3.14 2.58 -68.36 -0.18 2.97 16 13 H 0.02 0.36 8.04 -51.93 -0.42 -0.06 16 14 C 0.11 2.00 3.32 -66.80 -0.22 1.78 16 15 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 16 C -0.13 -2.56 4.94 -25.19 -0.12 -2.69 16 17 C 0.17 4.16 5.47 -1.69 -0.01 4.15 16 18 N -0.59 -14.51 3.35 -163.28 -0.55 -15.06 16 19 C -0.23 -6.13 9.94 -15.06 -0.15 -6.27 16 20 H 0.08 1.99 7.31 -52.49 -0.38 1.61 16 21 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 22 N -0.92 -26.57 10.46 55.49 0.58 -25.99 16 23 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C 0.11 1.47 6.91 -82.00 -0.57 0.90 16 28 C -0.12 -1.42 9.75 36.01 0.35 -1.07 16 29 N -0.24 -3.30 11.42 33.81 0.39 -2.92 16 30 N -0.23 -2.87 11.04 33.58 0.37 -2.50 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.53 7.96 -51.93 -0.41 0.12 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.37 7.92 -51.93 -0.41 -0.04 16 36 H 0.15 1.12 7.38 -52.48 -0.39 0.73 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.70 4.87 -51.93 -0.25 0.45 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 42 H 0.07 1.05 8.12 -51.93 -0.42 0.62 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.08 1.59 6.38 -51.93 -0.33 1.25 16 45 H 0.06 1.53 7.19 -51.93 -0.37 1.16 16 46 H 0.04 1.09 7.81 -51.93 -0.41 0.68 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 50 H 0.10 1.38 6.00 -51.93 -0.31 1.07 16 LS Contribution 385.41 15.07 5.81 5.81 Total: -1.00 -31.80 385.41 -9.25 -41.05 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.87 Total: -0.16 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -2.53 Total: 1.04 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.31 Total: -55.35 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.07 Total: -8.99 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.80 -9.25 -41.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049619904.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.238 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds