Wall clock time and date at job start Wed Apr 1 2020 03:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50703 * 109.46965 * 2 1 4 4 C 1.38543 * 120.01390 * 125.28171 * 3 2 1 5 5 C 1.40078 * 117.81784 * 180.26054 * 4 3 2 6 6 C 1.48129 * 121.14680 * 179.73969 * 5 4 3 7 7 O 1.21517 * 119.99959 * 233.67750 * 6 5 4 8 8 N 1.34782 * 119.99974 * 53.67787 * 6 5 4 9 9 C 1.47850 * 122.22536 * 354.76058 * 8 6 5 10 10 C 1.52718 * 111.05608 * 127.49065 * 9 8 6 11 11 C 1.53868 * 111.52667 * 48.53217 * 10 9 8 12 12 C 1.51082 * 107.34322 * 303.07254 * 11 10 9 13 13 H 1.08997 * 108.73525 * 309.14695 * 12 11 10 14 14 C 1.45721 * 122.22470 * 174.73225 * 8 6 5 15 15 H 1.09001 * 111.64076 * 119.17311 * 14 8 6 16 16 C 1.53431 * 116.37551 * 350.12943 * 14 8 6 17 17 C 1.55481 * 101.67005 * 207.26812 * 16 14 8 18 18 N 1.45023 * 119.19343 * 183.88574 * 12 11 10 19 19 C 1.36945 * 126.56357 * 28.79501 * 18 12 11 20 20 H 1.08000 * 119.99865 * 0.02562 * 19 18 12 21 21 C 1.38810 * 119.99983 * 180.02562 * 19 18 12 22 22 N 1.31618 * 120.00046 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00107 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47075 * 59.99637 * 23 21 19 25 25 H 1.48496 * 109.47342 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47056 * 300.00155 * 23 21 19 27 27 C 1.39765 * 117.70482 * 359.47369 * 5 4 3 28 28 C 1.50700 * 120.16983 * 180.24872 * 27 5 4 29 29 N 1.31892 * 119.65615 * 0.26592 * 27 5 4 30 30 N 1.28283 * 122.33314 * 0.02562 * 29 27 5 31 31 H 1.09000 * 109.46616 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46754 * 299.99920 * 1 2 3 33 33 H 1.08998 * 109.46844 * 60.00119 * 1 2 3 34 34 H 1.09005 * 109.47022 * 240.00241 * 2 1 3 35 35 H 1.08994 * 109.47430 * 120.00304 * 2 1 3 36 36 H 1.08003 * 121.09222 * 0.02562 * 4 3 2 37 37 H 1.09003 * 109.15910 * 247.89132 * 9 8 6 38 38 H 1.08993 * 109.16197 * 7.13456 * 9 8 6 39 39 H 1.09004 * 109.06931 * 288.00397 * 10 9 8 40 40 H 1.08999 * 109.07225 * 169.06301 * 10 9 8 41 41 H 1.09001 * 109.88433 * 183.60746 * 11 10 9 42 42 H 1.09001 * 109.88073 * 62.53034 * 11 10 9 43 43 H 1.08997 * 110.98741 * 89.17617 * 16 14 8 44 44 H 1.09000 * 110.98860 * 325.35876 * 16 14 8 45 45 H 1.09003 * 109.95828 * 263.21601 * 17 16 14 46 46 H 1.08996 * 109.98835 * 141.99469 * 17 16 14 47 47 H 0.97003 * 120.00080 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.46906 * 85.62942 * 28 27 5 49 49 H 1.09006 * 109.46795 * 205.61701 * 28 27 5 50 50 H 1.08996 * 109.47134 * 325.62415 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9167 1.8433 0.9793 5 6 3.3496 3.1749 0.9387 6 6 4.2902 3.7059 1.9525 7 8 4.0071 4.7088 2.5775 8 7 5.4599 3.0767 2.1815 9 6 5.8049 1.7933 1.5336 10 6 7.1659 1.8744 0.8456 11 6 8.2335 2.4774 1.7753 12 6 7.7364 3.8362 2.2102 13 1 7.4416 4.4007 1.3257 14 6 6.4689 3.6165 3.0838 15 1 6.6703 2.9387 3.9133 16 6 6.2406 5.0494 3.5827 17 6 7.6962 5.5229 3.8557 18 7 8.5902 4.6720 3.0321 19 6 9.9596 4.6755 3.0454 20 1 10.5076 4.0079 2.3971 21 6 10.6432 5.5372 3.8921 22 7 9.9754 6.3512 4.6819 23 14 12.5111 5.5425 3.9097 24 1 13.0179 5.8908 2.5579 25 1 12.9941 6.5456 4.8924 26 1 13.0064 4.1958 4.2922 27 6 2.8681 3.9835 -0.0945 28 6 3.3021 5.4232 -0.1944 29 7 2.0316 3.4802 -0.9813 30 7 1.6344 2.2613 -0.9353 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8935 -0.5138 0.8899 36 1 3.2580 1.1691 1.7510 37 1 5.8319 1.0074 2.2885 38 1 5.0438 1.5510 0.7920 39 1 7.0779 2.4956 -0.0457 40 1 7.4760 0.8720 0.5503 41 1 9.1763 2.5819 1.2384 42 1 8.3710 1.8367 2.6463 43 1 5.6503 5.0543 4.4989 44 1 5.7693 5.6604 2.8129 45 1 7.9353 5.4007 4.9121 46 1 7.8081 6.5682 3.5676 47 1 10.4531 6.9536 5.2733 48 1 4.2426 5.4819 -0.7422 49 1 2.5390 5.9970 -0.7204 50 1 3.4385 5.8319 0.8067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049619904.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:06 Heat of formation + Delta-G solvation = 35.734426 kcal Electronic energy + Delta-G solvation = -31519.090755 eV Core-core repulsion = 27546.823676 eV Total energy + Delta-G solvation = -3972.267078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.65460 -41.47366 -39.36324 -37.09936 -36.23015 -34.92822 -34.18757 -33.85035 -32.55178 -30.84262 -29.76380 -28.95794 -27.42052 -26.39794 -25.64705 -24.43064 -23.56189 -22.90225 -22.39484 -21.46601 -20.42956 -18.81854 -18.63610 -17.85710 -17.25405 -17.01226 -16.86397 -16.45068 -16.26307 -15.90894 -15.71199 -15.46727 -15.22291 -15.04374 -14.94690 -14.44049 -14.31105 -14.11246 -14.02521 -13.89267 -13.47058 -13.37397 -13.19883 -13.17893 -12.92869 -12.71362 -12.68732 -12.35363 -12.23371 -12.08398 -12.04702 -11.84268 -11.78933 -11.72711 -11.62878 -11.50785 -11.25471 -11.09247 -10.73891 -10.55894 -10.40962 -9.69666 -8.91964 -7.84364 -5.21160 -0.67108 -0.27189 1.33402 1.46365 1.49443 1.55578 1.70185 2.32284 2.50116 2.81310 2.97744 3.22872 3.34376 3.36482 3.41416 3.69852 3.83276 3.92008 3.95051 3.99670 4.01426 4.13924 4.20337 4.28947 4.38167 4.40674 4.51144 4.53044 4.54067 4.55335 4.59580 4.65198 4.69777 4.84548 4.90843 4.96830 5.01420 5.07080 5.09145 5.11017 5.15309 5.21947 5.26532 5.36002 5.45362 5.48115 5.55134 5.58493 5.71315 6.17481 6.26107 6.89568 7.05358 7.55639 7.75466 8.44484 9.27081 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021564 B = 0.002849 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.121264 B = 9824.459864 C =10349.986777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C 0.067 3.933 4 C -0.069 4.069 5 C -0.126 4.126 6 C 0.567 3.433 7 O -0.547 6.547 8 N -0.584 5.584 9 C 0.097 3.903 10 C -0.121 4.121 11 C -0.111 4.111 12 C 0.153 3.847 13 H -0.003 1.003 14 C 0.133 3.867 15 H 0.093 0.907 16 C -0.113 4.113 17 C 0.183 3.817 18 N -0.610 5.610 19 C -0.233 4.233 20 H 0.089 0.911 21 C -0.068 4.068 22 N -0.954 5.954 23 Si 0.977 3.023 24 H -0.279 1.279 25 H -0.298 1.298 26 H -0.272 1.272 27 C 0.099 3.901 28 C -0.113 4.113 29 N -0.261 5.261 30 N -0.249 5.249 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.192 0.808 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.114 0.886 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.028 0.972 46 H -0.001 1.001 47 H 0.246 0.754 48 H 0.088 0.912 49 H 0.095 0.905 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.667 -17.894 -9.078 25.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.078 4.078 4 C -0.098 4.098 5 C -0.140 4.140 6 C 0.354 3.646 7 O -0.426 6.426 8 N -0.315 5.315 9 C -0.024 4.024 10 C -0.159 4.159 11 C -0.149 4.149 12 C 0.045 3.955 13 H 0.015 0.985 14 C 0.028 3.972 15 H 0.110 0.890 16 C -0.151 4.151 17 C 0.057 3.943 18 N -0.335 5.335 19 C -0.361 4.361 20 H 0.107 0.893 21 C -0.260 4.260 22 N -0.603 5.603 23 Si 0.805 3.195 24 H -0.205 1.205 25 H -0.225 1.225 26 H -0.198 1.198 27 C -0.047 4.047 28 C -0.172 4.172 29 N -0.103 5.103 30 N -0.090 5.090 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.121 0.879 35 H 0.134 0.866 36 H 0.209 0.791 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.133 0.867 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.046 0.954 46 H 0.017 0.983 47 H 0.055 0.945 48 H 0.106 0.894 49 H 0.113 0.887 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.570 -16.989 -10.029 25.764 hybrid contribution 2.051 0.987 1.556 2.757 sum -14.520 -16.001 -8.473 23.209 Atomic orbital electron populations 1.21713 0.93934 1.03191 1.01673 1.20666 0.97029 0.86672 1.06062 1.23419 0.93483 0.99850 0.91067 1.22917 0.94167 0.93692 0.99027 1.21000 0.99927 0.96118 0.96944 1.18124 0.81251 0.83220 0.82033 1.90801 1.75524 1.26068 1.50175 1.47971 1.15292 1.24314 1.43959 1.22310 0.97755 0.83717 0.98586 1.21878 0.93231 1.03182 0.97625 1.21403 0.98812 0.94813 0.99904 1.20932 0.90143 0.92385 0.92064 0.98514 1.22108 0.87297 0.95278 0.92535 0.88969 1.22682 0.95841 0.95347 1.01253 1.21446 0.86123 0.92269 0.94438 1.44312 1.01493 1.42088 1.45617 1.19352 0.81047 1.17482 1.18268 0.89329 1.25665 1.02463 0.98829 0.99090 1.70158 1.34971 1.26787 1.28361 0.85173 0.79880 0.77354 0.77056 1.20539 1.22489 1.19754 1.23047 0.92480 0.98732 0.90394 1.20872 1.02942 0.88738 1.04610 1.73024 1.09322 1.06367 1.21564 1.72683 1.18099 0.97496 1.20724 0.89710 0.93498 0.93185 0.87899 0.86602 0.79079 0.87570 0.88088 0.92660 0.86736 0.92510 0.91041 0.91247 0.91343 0.95384 0.98250 0.94462 0.89379 0.88656 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.78 71.98 0.70 -0.75 16 2 C -0.07 -0.54 6.35 29.85 0.19 -0.35 16 3 C 0.07 1.09 6.25 42.62 0.27 1.36 16 4 C -0.07 -1.08 7.31 22.79 0.17 -0.91 16 5 C -0.13 -2.93 5.01 -19.83 -0.10 -3.03 16 6 C 0.57 16.12 6.65 86.87 0.58 16.70 16 7 O -0.55 -19.60 12.22 -3.77 -0.05 -19.64 16 8 N -0.58 -15.38 2.91 -794.21 -2.31 -17.69 16 9 C 0.10 1.63 5.62 86.03 0.48 2.11 16 10 C -0.12 -2.34 5.92 30.79 0.18 -2.16 16 11 C -0.11 -3.29 5.45 30.26 0.16 -3.13 16 12 C 0.15 5.98 2.58 45.50 0.12 6.10 16 13 H 0.00 -0.11 8.04 -2.39 -0.02 -0.13 16 14 C 0.13 4.56 3.32 46.14 0.15 4.72 16 15 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 16 C -0.11 -4.65 4.94 31.59 0.16 -4.49 16 17 C 0.18 9.36 5.47 86.87 0.48 9.83 16 18 N -0.61 -30.89 3.35 -670.50 -2.25 -33.13 16 19 C -0.23 -12.66 9.94 84.03 0.84 -11.83 16 20 H 0.09 4.51 7.31 -2.91 -0.02 4.49 16 21 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 22 N -0.95 -57.80 10.46 21.65 0.23 -57.57 16 23 Si 0.98 45.23 29.55 68.60 2.03 47.26 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 C 0.10 2.55 6.91 42.92 0.30 2.85 16 28 C -0.11 -2.84 9.75 71.24 0.69 -2.15 16 29 N -0.26 -7.02 11.42 -46.94 -0.54 -7.56 16 30 N -0.25 -5.83 11.04 -47.68 -0.53 -6.35 16 31 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.68 7.96 -2.39 -0.02 0.66 16 34 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.12 0.27 7.92 -2.39 -0.02 0.25 16 36 H 0.19 1.54 7.38 -2.91 -0.02 1.52 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 1.28 4.87 -2.39 -0.01 1.27 16 39 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.82 7.70 -2.39 -0.02 1.80 16 42 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 43 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.07 2.95 6.38 -2.39 -0.02 2.94 16 45 H 0.03 1.58 7.19 -2.39 -0.02 1.56 16 46 H 0.00 -0.05 7.81 -2.39 -0.02 -0.06 16 47 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 48 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 50 H 0.08 2.38 6.00 -2.39 -0.01 2.37 16 Total: -1.00 -74.99 385.41 3.36 -71.64 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.94 Total: 11.53 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 5.83 Total: 11.53 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -5.39 Total: -122.31 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.05 Total: -19.64 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -74.99 3.36 -71.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049619904.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.370 kcal (2) G-P(sol) polarization free energy of solvation -74.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds