Wall clock time and date at job start Wed Apr 1 2020 03:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47573 * 2 1 4 4 C 1.50696 * 109.47195 * 120.00285 * 2 1 3 5 5 N 1.32160 * 120.53949 * 306.37567 * 4 2 1 6 6 C 1.31853 * 120.97330 * 180.02562 * 5 4 2 7 7 N 1.31884 * 122.08958 * 0.02562 * 6 5 4 8 8 C 1.32133 * 120.97124 * 359.70609 * 7 6 5 9 9 C 1.39932 * 120.53991 * 126.39549 * 4 2 1 10 10 C 1.47833 * 120.93591 * 359.97438 * 9 4 2 11 11 O 1.21550 * 119.99955 * 53.42277 * 10 9 4 12 12 N 1.34781 * 119.99960 * 233.42132 * 10 9 4 13 13 C 1.47851 * 122.22267 * 354.19464 * 12 10 9 14 14 C 1.52719 * 111.05908 * 127.53846 * 13 12 10 15 15 C 1.53872 * 111.52675 * 48.52815 * 14 13 12 16 16 C 1.51347 * 107.26751 * 302.86200 * 15 14 13 17 17 H 1.09003 * 108.79367 * 308.76407 * 16 15 14 18 18 C 1.45726 * 122.22615 * 174.21532 * 12 10 9 19 19 H 1.08998 * 111.07260 * 118.57881 * 18 12 10 20 20 C 1.53435 * 116.36741 * 350.07366 * 18 12 10 21 21 C 1.55472 * 101.66923 * 207.28276 * 20 18 12 22 22 N 1.45024 * 119.01744 * 183.59467 * 16 15 14 23 23 C 1.36937 * 126.56226 * 29.31567 * 22 16 15 24 24 H 1.08005 * 120.00090 * 359.71785 * 23 22 16 25 25 C 1.38811 * 120.00284 * 179.70887 * 23 22 16 26 26 N 1.31627 * 119.99640 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00380 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47194 * 180.02562 * 27 25 23 29 29 H 1.48497 * 109.47194 * 300.00601 * 27 25 23 30 30 H 1.48507 * 109.47043 * 60.00474 * 27 25 23 31 31 H 1.08998 * 109.47430 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47092 * 299.99917 * 1 2 3 33 33 H 1.09006 * 109.46812 * 59.99834 * 1 2 3 34 34 H 1.09007 * 109.47110 * 240.00346 * 2 1 3 35 35 H 1.08997 * 109.47533 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47249 * 300.00348 * 3 2 1 37 37 H 1.09007 * 109.46620 * 60.00046 * 3 2 1 38 38 H 1.07991 * 118.95588 * 180.02562 * 6 5 4 39 39 H 1.07997 * 120.53829 * 180.30986 * 8 7 6 40 40 H 1.09007 * 109.15969 * 247.93789 * 13 12 10 41 41 H 1.08996 * 109.16467 * 7.12996 * 13 12 10 42 42 H 1.09006 * 109.06960 * 169.06075 * 14 13 12 43 43 H 1.09006 * 109.06761 * 288.00258 * 14 13 12 44 44 H 1.08999 * 109.87882 * 62.53249 * 15 14 13 45 45 H 1.09000 * 109.88247 * 183.54210 * 15 14 13 46 46 H 1.08991 * 110.98583 * 89.18536 * 20 18 12 47 47 H 1.09001 * 111.01704 * 325.38981 * 20 18 12 48 48 H 1.09007 * 109.95504 * 263.21869 * 21 20 18 49 49 H 1.08996 * 109.98937 * 141.99873 * 21 20 18 50 50 H 0.96998 * 119.99725 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.6197 -0.3459 2.4318 6 6 2.0540 -0.9612 3.5141 7 7 2.9130 -1.9602 3.4550 8 6 3.3736 -2.3932 2.2947 9 6 2.9436 -1.7666 1.1194 10 6 3.4344 -2.2111 -0.2023 11 8 3.9263 -1.4071 -0.9698 12 7 3.3365 -3.5079 -0.5563 13 6 2.8641 -4.5479 0.3825 14 6 1.7262 -5.3627 -0.2286 15 6 2.0709 -5.8350 -1.6519 16 6 2.3852 -4.6015 -2.4707 17 1 1.5731 -3.8843 -2.3511 18 6 3.6896 -3.9783 -1.8896 19 1 4.5084 -4.6966 -1.8476 20 6 3.9551 -2.8972 -2.9455 21 6 3.5842 -3.6424 -4.2586 22 7 2.6700 -4.7497 -3.8850 23 6 2.1834 -5.7219 -4.7176 24 1 1.5200 -6.4815 -4.3310 25 6 2.5426 -5.7312 -6.0583 26 7 3.3514 -4.8056 -6.5293 27 14 1.8795 -7.0578 -7.1939 28 1 2.4096 -6.8463 -8.5649 29 1 2.3057 -8.3914 -6.6991 30 1 0.3962 -6.9906 -7.2205 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 3.1301 1.4425 0.0005 36 1 1.6768 1.9564 -0.8899 37 1 1.6768 1.9563 0.8901 38 1 1.6950 -0.6368 4.4796 39 1 4.0730 -3.2151 2.2542 40 1 3.6919 -5.2146 0.6240 41 1 2.5115 -4.0709 1.2970 42 1 1.5346 -6.2333 0.3989 43 1 0.8273 -4.7472 -0.2656 44 1 2.9370 -6.4962 -1.6234 45 1 1.2189 -6.3587 -2.0853 46 1 5.0043 -2.6023 -2.9470 47 1 3.3089 -2.0330 -2.7912 48 1 4.4838 -4.0440 -4.7252 49 1 3.0821 -2.9606 -4.9449 50 1 3.6027 -4.8123 -7.4662 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049908626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:29 Heat of formation + Delta-G solvation = 47.853873 kcal Electronic energy + Delta-G solvation = -32077.020862 eV Core-core repulsion = 28105.279322 eV Total energy + Delta-G solvation = -3971.741540 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.68770 -40.11373 -37.87538 -36.27236 -35.51622 -33.37460 -32.72375 -32.40749 -31.53931 -28.95867 -28.30244 -27.23219 -25.89644 -25.15869 -24.52506 -23.99995 -21.61166 -21.25868 -20.89543 -19.86517 -19.27479 -18.13449 -17.10453 -16.88034 -16.48729 -15.83482 -15.44526 -14.87690 -14.81901 -14.66577 -14.47066 -14.27380 -14.12614 -13.84766 -13.72244 -13.40944 -13.23380 -12.95849 -12.53196 -12.40554 -12.26438 -12.03137 -11.72315 -11.68484 -11.65270 -11.44028 -11.20396 -11.02216 -10.86009 -10.84761 -10.65484 -10.55279 -10.47295 -10.15637 -10.08410 -9.93683 -9.77439 -9.64786 -9.51401 -9.19195 -8.62677 -8.36372 -6.86965 -5.72788 -3.07458 0.35514 0.73748 2.58700 2.94709 3.38860 3.43327 3.44779 3.45184 3.71478 3.81445 4.03891 4.24995 4.46675 4.64629 4.71731 4.92090 4.93668 4.97976 5.02795 5.16972 5.21407 5.28631 5.36756 5.48259 5.50596 5.57052 5.58973 5.69198 5.74090 5.77575 5.78559 5.89495 5.91565 5.98459 6.03633 6.14635 6.17109 6.21215 6.21685 6.31587 6.47710 6.61433 6.64330 6.69959 6.80909 7.07140 7.47129 7.55613 7.61942 7.74166 7.80307 8.16126 8.22289 9.16312 9.80136 10.47579 11.39106 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016986 B = 0.003319 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.985318 B = 8433.369827 C = 9039.518693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.057 4.057 3 C -0.134 4.134 4 C 0.233 3.767 5 N -0.514 5.514 6 C 0.306 3.694 7 N -0.525 5.525 8 C 0.177 3.823 9 C -0.226 4.226 10 C 0.569 3.431 11 O -0.513 6.513 12 N -0.589 5.589 13 C 0.104 3.896 14 C -0.129 4.129 15 C -0.116 4.116 16 C 0.161 3.839 17 H 0.018 0.982 18 C 0.116 3.884 19 H 0.084 0.916 20 C -0.128 4.128 21 C 0.172 3.828 22 N -0.592 5.592 23 C -0.229 4.229 24 H 0.078 0.922 25 C -0.005 4.005 26 N -0.919 5.919 27 Si 0.910 3.090 28 H -0.290 1.290 29 H -0.285 1.285 30 H -0.285 1.285 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.199 0.801 39 H 0.173 0.827 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.058 0.942 49 H 0.040 0.960 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.386 5.973 19.357 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 C -0.191 4.191 4 C 0.086 3.914 5 N -0.227 5.227 6 C 0.018 3.982 7 N -0.239 5.239 8 C 0.011 3.989 9 C -0.234 4.234 10 C 0.354 3.646 11 O -0.390 6.390 12 N -0.322 5.322 13 C -0.019 4.019 14 C -0.168 4.168 15 C -0.154 4.154 16 C 0.052 3.948 17 H 0.036 0.964 18 C 0.012 3.988 19 H 0.102 0.898 20 C -0.166 4.166 21 C 0.048 3.952 22 N -0.316 5.316 23 C -0.357 4.357 24 H 0.096 0.904 25 C -0.202 4.202 26 N -0.566 5.566 27 Si 0.741 3.259 28 H -0.216 1.216 29 H -0.212 1.212 30 H -0.212 1.212 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.216 0.784 39 H 0.190 0.810 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.058 0.942 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.430 6.666 19.583 20.828 hybrid contribution -0.002 -1.170 -1.231 1.698 sum -2.432 5.496 18.352 19.311 Atomic orbital electron populations 1.21778 0.93013 1.02128 1.02784 1.20376 0.96937 0.97201 0.93093 1.21701 1.01450 0.93595 1.02403 1.21826 0.87413 0.88270 0.93908 1.68266 1.26227 1.29684 0.98554 1.25145 0.88321 0.87100 0.97588 1.68441 1.12483 1.14624 1.28328 1.23458 0.93814 0.95250 0.86402 1.21785 1.03517 1.01186 0.96900 1.17715 0.79308 0.82194 0.85341 1.90830 1.43853 1.52701 1.51585 1.47984 1.63961 1.06041 1.14179 1.21916 0.97825 0.90177 0.91949 1.21894 0.97765 0.99457 0.97653 1.21487 1.02098 0.98763 0.93099 1.20847 0.93507 0.94375 0.86100 0.96431 1.22584 0.98970 0.97583 0.79677 0.89771 1.22931 1.01593 0.97090 0.95033 1.21751 0.94327 0.88253 0.90895 1.44068 1.54774 1.30682 1.02125 1.18931 1.23192 1.04100 0.89462 0.90408 1.24799 0.99748 0.98700 0.96954 1.69932 1.38050 1.34642 1.13996 0.86232 0.78358 0.81184 0.80158 1.21596 1.21173 1.21201 0.92887 0.91485 0.91565 0.88068 0.92302 0.91516 0.92053 0.78415 0.81037 0.90861 0.90725 0.90743 0.91923 0.91574 0.91355 0.91765 0.90578 0.92409 0.94202 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.05 37.16 0.34 -1.18 16 2 C -0.06 -0.71 2.88 -91.77 -0.26 -0.97 16 3 C -0.13 -1.50 9.16 37.16 0.34 -1.16 16 4 C 0.23 2.92 5.53 -81.82 -0.45 2.47 16 5 N -0.51 -5.86 9.97 -10.48 -0.10 -5.96 16 6 C 0.31 2.97 12.27 -92.03 -1.13 1.84 16 7 N -0.53 -5.54 10.42 -14.25 -0.15 -5.69 16 8 C 0.18 1.89 8.78 -16.78 -0.15 1.75 16 9 C -0.23 -2.88 5.03 -104.69 -0.53 -3.40 16 10 C 0.57 8.57 6.27 -12.33 -0.08 8.50 16 11 O -0.51 -9.19 12.62 5.32 0.07 -9.12 16 12 N -0.59 -8.59 2.91 -164.90 -0.48 -9.07 16 13 C 0.10 1.17 5.57 -3.44 -0.02 1.15 16 14 C -0.13 -1.56 5.92 -26.42 -0.16 -1.71 16 15 C -0.12 -1.88 5.45 -27.11 -0.15 -2.02 16 16 C 0.16 3.19 2.61 -68.06 -0.18 3.01 16 17 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 18 C 0.12 2.06 3.33 -66.62 -0.22 1.84 16 19 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 20 C -0.13 -2.57 4.93 -25.19 -0.12 -2.69 16 21 C 0.17 4.19 5.47 -1.69 -0.01 4.18 16 22 N -0.59 -14.62 3.35 -162.93 -0.55 -15.17 16 23 C -0.23 -6.14 9.94 -15.06 -0.15 -6.29 16 24 H 0.08 2.00 7.31 -52.48 -0.38 1.62 16 25 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 26 N -0.92 -26.66 10.46 55.49 0.58 -26.08 16 27 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 30 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.69 7.96 -51.93 -0.41 0.27 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.49 5.78 -51.93 -0.30 1.19 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.20 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.17 1.45 7.32 -52.49 -0.38 1.07 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.73 4.80 -51.93 -0.25 0.48 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 45 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.08 1.58 6.40 -51.93 -0.33 1.24 16 48 H 0.06 1.54 7.19 -51.93 -0.37 1.17 16 49 H 0.04 1.07 7.81 -51.93 -0.41 0.66 16 50 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -31.27 384.52 -10.75 -42.02 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.87 Total: 1.54 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -3.02 Total: 5.06 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -0.70 Total: -61.97 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.27 -10.75 -42.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049908626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.874 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds