Wall clock time and date at job start Wed Apr 1 2020 03:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47573 * 2 1 4 4 C 1.50696 * 109.47195 * 120.00285 * 2 1 3 5 5 N 1.32160 * 120.53949 * 306.37567 * 4 2 1 6 6 C 1.31853 * 120.97330 * 180.02562 * 5 4 2 7 7 N 1.31884 * 122.08958 * 0.02562 * 6 5 4 8 8 C 1.32133 * 120.97124 * 359.70609 * 7 6 5 9 9 C 1.39932 * 120.53991 * 126.39549 * 4 2 1 10 10 C 1.47833 * 120.93591 * 359.97438 * 9 4 2 11 11 O 1.21550 * 119.99955 * 53.42277 * 10 9 4 12 12 N 1.34781 * 119.99960 * 233.42132 * 10 9 4 13 13 C 1.47851 * 122.22267 * 354.19464 * 12 10 9 14 14 C 1.52719 * 111.05908 * 127.53846 * 13 12 10 15 15 C 1.53872 * 111.52675 * 48.52815 * 14 13 12 16 16 C 1.51347 * 107.26751 * 302.86200 * 15 14 13 17 17 H 1.09003 * 108.79367 * 308.76407 * 16 15 14 18 18 C 1.45726 * 122.22615 * 174.21532 * 12 10 9 19 19 H 1.08998 * 111.07260 * 118.57881 * 18 12 10 20 20 C 1.53435 * 116.36741 * 350.07366 * 18 12 10 21 21 C 1.55472 * 101.66923 * 207.28276 * 20 18 12 22 22 N 1.45024 * 119.01744 * 183.59467 * 16 15 14 23 23 C 1.36937 * 126.56226 * 29.31567 * 22 16 15 24 24 H 1.08005 * 120.00090 * 359.71785 * 23 22 16 25 25 C 1.38811 * 120.00284 * 179.70887 * 23 22 16 26 26 N 1.31627 * 119.99640 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00380 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47194 * 180.02562 * 27 25 23 29 29 H 1.48497 * 109.47194 * 300.00601 * 27 25 23 30 30 H 1.48507 * 109.47043 * 60.00474 * 27 25 23 31 31 H 1.08998 * 109.47430 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47092 * 299.99917 * 1 2 3 33 33 H 1.09006 * 109.46812 * 59.99834 * 1 2 3 34 34 H 1.09007 * 109.47110 * 240.00346 * 2 1 3 35 35 H 1.08997 * 109.47533 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47249 * 300.00348 * 3 2 1 37 37 H 1.09007 * 109.46620 * 60.00046 * 3 2 1 38 38 H 1.07991 * 118.95588 * 180.02562 * 6 5 4 39 39 H 1.07997 * 120.53829 * 180.30986 * 8 7 6 40 40 H 1.09007 * 109.15969 * 247.93789 * 13 12 10 41 41 H 1.08996 * 109.16467 * 7.12996 * 13 12 10 42 42 H 1.09006 * 109.06960 * 169.06075 * 14 13 12 43 43 H 1.09006 * 109.06761 * 288.00258 * 14 13 12 44 44 H 1.08999 * 109.87882 * 62.53249 * 15 14 13 45 45 H 1.09000 * 109.88247 * 183.54210 * 15 14 13 46 46 H 1.08991 * 110.98583 * 89.18536 * 20 18 12 47 47 H 1.09001 * 111.01704 * 325.38981 * 20 18 12 48 48 H 1.09007 * 109.95504 * 263.21869 * 21 20 18 49 49 H 1.08996 * 109.98937 * 141.99873 * 21 20 18 50 50 H 0.96998 * 119.99725 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.6197 -0.3459 2.4318 6 6 2.0540 -0.9612 3.5141 7 7 2.9130 -1.9602 3.4550 8 6 3.3736 -2.3932 2.2947 9 6 2.9436 -1.7666 1.1194 10 6 3.4344 -2.2111 -0.2023 11 8 3.9263 -1.4071 -0.9698 12 7 3.3365 -3.5079 -0.5563 13 6 2.8641 -4.5479 0.3825 14 6 1.7262 -5.3627 -0.2286 15 6 2.0709 -5.8350 -1.6519 16 6 2.3852 -4.6015 -2.4707 17 1 1.5731 -3.8843 -2.3511 18 6 3.6896 -3.9783 -1.8896 19 1 4.5084 -4.6966 -1.8476 20 6 3.9551 -2.8972 -2.9455 21 6 3.5842 -3.6424 -4.2586 22 7 2.6700 -4.7497 -3.8850 23 6 2.1834 -5.7219 -4.7176 24 1 1.5200 -6.4815 -4.3310 25 6 2.5426 -5.7312 -6.0583 26 7 3.3514 -4.8056 -6.5293 27 14 1.8795 -7.0578 -7.1939 28 1 2.4096 -6.8463 -8.5649 29 1 2.3057 -8.3914 -6.6991 30 1 0.3962 -6.9906 -7.2205 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 3.1301 1.4425 0.0005 36 1 1.6768 1.9564 -0.8899 37 1 1.6768 1.9563 0.8901 38 1 1.6950 -0.6368 4.4796 39 1 4.0730 -3.2151 2.2542 40 1 3.6919 -5.2146 0.6240 41 1 2.5115 -4.0709 1.2970 42 1 1.5346 -6.2333 0.3989 43 1 0.8273 -4.7472 -0.2656 44 1 2.9370 -6.4962 -1.6234 45 1 1.2189 -6.3587 -2.0853 46 1 5.0043 -2.6023 -2.9470 47 1 3.3089 -2.0330 -2.7912 48 1 4.4838 -4.0440 -4.7252 49 1 3.0821 -2.9606 -4.9449 50 1 3.6027 -4.8123 -7.4662 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049908626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:28 Heat of formation + Delta-G solvation = 29.920941 kcal Electronic energy + Delta-G solvation = -32077.798492 eV Core-core repulsion = 28105.279322 eV Total energy + Delta-G solvation = -3972.519170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.63471 -41.35402 -39.25263 -37.31446 -36.84605 -34.53059 -34.13046 -33.79405 -32.70195 -30.72470 -29.73470 -28.13017 -27.03384 -26.40272 -25.97833 -25.21205 -22.90991 -22.67674 -21.87368 -21.56138 -20.54647 -19.06404 -18.60688 -17.83472 -17.76130 -17.19834 -16.92026 -16.41245 -15.92592 -15.79656 -15.74235 -15.46622 -15.36337 -15.07983 -14.91602 -14.55733 -14.30861 -14.14555 -14.10204 -13.95723 -13.45953 -13.18565 -13.12333 -12.96374 -12.72859 -12.68711 -12.56728 -12.36841 -12.25394 -12.16853 -12.04672 -11.91468 -11.78541 -11.72776 -11.64858 -11.50189 -11.44058 -10.80831 -10.72160 -10.43398 -10.35763 -9.64315 -8.91282 -7.83569 -5.20406 -0.50910 -0.12155 1.43755 1.47060 1.49988 1.56008 1.80909 2.50842 2.60318 2.86467 3.05395 3.18872 3.21205 3.35203 3.44812 3.74721 3.84806 3.91804 3.97777 4.00486 4.03481 4.10108 4.17103 4.20660 4.29076 4.40405 4.52769 4.55560 4.57874 4.60041 4.70132 4.72617 4.84143 4.87238 4.89338 4.97558 5.03082 5.07196 5.11183 5.17193 5.23718 5.25946 5.32817 5.37551 5.48426 5.56429 5.58985 5.71916 5.76925 6.18129 6.33378 6.92275 6.98914 7.06023 7.76117 8.45419 9.27861 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016986 B = 0.003319 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.985318 B = 8433.369827 C = 9039.518693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.060 4.060 3 C -0.127 4.127 4 C 0.226 3.774 5 N -0.521 5.521 6 C 0.311 3.689 7 N -0.527 5.527 8 C 0.190 3.810 9 C -0.243 4.243 10 C 0.570 3.430 11 O -0.551 6.551 12 N -0.589 5.589 13 C 0.100 3.900 14 C -0.119 4.119 15 C -0.111 4.111 16 C 0.155 3.845 17 H -0.001 1.001 18 C 0.133 3.867 19 H 0.090 0.910 20 C -0.110 4.110 21 C 0.183 3.817 22 N -0.611 5.611 23 C -0.234 4.234 24 H 0.089 0.911 25 C -0.067 4.067 26 N -0.953 5.953 27 Si 0.977 3.023 28 H -0.298 1.298 29 H -0.273 1.273 30 H -0.279 1.279 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.236 0.764 39 H 0.198 0.802 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.028 0.972 49 H -0.001 1.001 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.189 4.723 23.165 23.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.079 4.079 3 C -0.185 4.185 4 C 0.079 3.921 5 N -0.235 5.235 6 C 0.025 3.975 7 N -0.241 5.241 8 C 0.023 3.977 9 C -0.251 4.251 10 C 0.357 3.643 11 O -0.429 6.429 12 N -0.320 5.320 13 C -0.021 4.021 14 C -0.158 4.158 15 C -0.149 4.149 16 C 0.047 3.953 17 H 0.017 0.983 18 C 0.028 3.972 19 H 0.108 0.892 20 C -0.149 4.149 21 C 0.058 3.942 22 N -0.335 5.335 23 C -0.362 4.362 24 H 0.106 0.894 25 C -0.260 4.260 26 N -0.602 5.602 27 Si 0.805 3.195 28 H -0.224 1.224 29 H -0.198 1.198 30 H -0.205 1.205 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.252 0.748 39 H 0.214 0.786 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.130 0.870 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.046 0.954 49 H 0.018 0.982 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.264 5.398 23.465 24.298 hybrid contribution 0.203 -0.710 -2.338 2.452 sum -3.060 4.688 21.127 21.856 Atomic orbital electron populations 1.21724 0.91897 1.01869 1.03504 1.20321 0.97845 0.97455 0.92297 1.21649 1.00401 0.93196 1.03268 1.21816 0.87605 0.88259 0.94381 1.68332 1.26683 1.30102 0.98382 1.25943 0.87072 0.86054 0.98392 1.68581 1.12733 1.14962 1.27807 1.23822 0.93226 0.95170 0.85519 1.21550 1.04978 1.02439 0.96105 1.18056 0.78461 0.81768 0.85984 1.90807 1.45428 1.53643 1.53058 1.47994 1.63941 1.06898 1.13212 1.22230 0.98588 0.89675 0.91576 1.21863 0.97736 1.00888 0.95311 1.21453 1.01771 0.96777 0.94932 1.21012 0.93851 0.96269 0.84179 0.98349 1.22159 0.97833 0.96160 0.81011 0.89232 1.22651 1.01394 0.96930 0.93920 1.21443 0.92655 0.87865 0.92287 1.44315 1.54621 1.30164 1.04446 1.19359 1.22641 1.04253 0.89993 0.89356 1.25660 1.00620 1.01045 0.98640 1.70165 1.39784 1.36626 1.13664 0.85173 0.77800 0.78938 0.77548 1.22447 1.19840 1.20476 0.93586 0.90469 0.91084 0.91080 0.93812 0.90846 0.90931 0.74781 0.78560 0.87976 0.88488 0.86970 0.92581 0.91153 0.92502 0.91393 0.91486 0.95418 0.98243 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.05 71.98 0.65 -2.15 16 2 C -0.06 -1.49 2.88 -11.54 -0.03 -1.52 16 3 C -0.13 -2.85 9.16 71.98 0.66 -2.19 16 4 C 0.23 5.38 5.53 42.92 0.24 5.62 16 5 N -0.52 -10.56 9.97 -187.07 -1.87 -12.43 16 6 C 0.31 4.91 12.27 180.84 2.22 7.13 16 7 N -0.53 -9.07 10.42 -198.99 -2.07 -11.14 16 8 C 0.19 3.39 8.78 85.07 0.75 4.14 16 9 C -0.24 -5.75 5.03 -19.91 -0.10 -5.85 16 10 C 0.57 16.83 6.27 86.78 0.54 17.37 16 11 O -0.55 -20.22 12.62 -3.87 -0.05 -20.26 16 12 N -0.59 -16.33 2.91 -793.89 -2.31 -18.64 16 13 C 0.10 1.88 5.57 86.03 0.48 2.36 16 14 C -0.12 -2.48 5.92 30.80 0.18 -2.30 16 15 C -0.11 -3.41 5.45 30.35 0.17 -3.25 16 16 C 0.16 6.21 2.61 45.70 0.12 6.32 16 17 H 0.00 -0.04 8.05 -2.39 -0.02 -0.06 16 18 C 0.13 4.75 3.33 46.26 0.15 4.90 16 19 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 20 C -0.11 -4.66 4.93 31.59 0.16 -4.50 16 21 C 0.18 9.50 5.47 86.87 0.47 9.97 16 22 N -0.61 -31.32 3.35 -669.39 -2.24 -33.56 16 23 C -0.23 -12.84 9.94 84.03 0.84 -12.01 16 24 H 0.09 4.55 7.31 -2.91 -0.02 4.53 16 25 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 26 N -0.95 -58.09 10.46 21.65 0.23 -57.86 16 27 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 30 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 31 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.47 7.96 -2.39 -0.02 1.45 16 33 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.07 2.21 5.78 -2.38 -0.01 2.19 16 35 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.24 1.74 8.06 -2.92 -0.02 1.72 16 39 H 0.20 2.43 7.32 -2.91 -0.02 2.41 16 40 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.10 1.45 4.80 -2.39 -0.01 1.44 16 42 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 45 H 0.06 1.87 7.70 -2.39 -0.02 1.85 16 46 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 47 H 0.07 2.96 6.40 -2.39 -0.02 2.94 16 48 H 0.03 1.58 7.19 -2.38 -0.02 1.56 16 49 H 0.00 -0.04 7.81 -2.39 -0.02 -0.06 16 50 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -72.45 384.52 2.61 -69.84 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.94 Total: 15.81 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 7.96 Total: 20.71 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -8.26 Total: -133.63 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.05 Total: -20.26 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -72.45 2.61 -69.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049908626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.764 kcal (2) G-P(sol) polarization free energy of solvation -72.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds