Wall clock time and date at job start Wed Apr 1 2020 03:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31809 * 119.11912 * 2 1 4 4 C 1.32319 * 120.81780 * 179.97438 * 3 2 1 5 5 C 1.38614 * 119.10358 * 0.02562 * 4 3 2 6 6 C 1.38581 * 118.40193 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.45278 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47110 * 124.99785 * 7 6 5 9 9 C 1.50699 * 109.47110 * 179.97438 * 8 7 6 10 10 O 1.21274 * 120.00109 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99921 * 179.97438 * 9 8 7 12 12 C 1.47168 * 135.99959 * 359.63870 * 11 9 8 13 13 C 1.52679 * 87.95841 * 206.73219 * 12 11 9 14 14 C 1.47164 * 135.99764 * 180.02562 * 11 9 8 15 15 C 1.52554 * 113.90886 * 88.15432 * 13 12 11 16 16 C 1.53352 * 109.12689 * 190.30394 * 15 13 12 17 17 N 1.46893 * 108.75267 * 307.76216 * 16 15 13 18 18 C 1.36936 * 120.46089 * 235.64432 * 17 16 15 19 19 H 1.08004 * 119.99744 * 28.44050 * 18 17 16 20 20 C 1.38807 * 120.00115 * 208.43246 * 18 17 16 21 21 N 1.31624 * 119.99945 * 17.65753 * 20 18 17 22 22 Si 1.86799 * 120.00281 * 197.65779 * 20 18 17 23 23 H 1.48496 * 109.46940 * 59.99977 * 22 20 18 24 24 H 1.48497 * 109.47187 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46996 * 300.00427 * 22 20 18 26 26 C 1.46889 * 119.07193 * 55.62369 * 17 16 15 27 27 C 1.52556 * 114.24783 * 220.75210 * 13 12 11 28 28 N 1.31780 * 119.12663 * 180.26436 * 2 1 3 29 29 H 1.09005 * 109.47245 * 89.99827 * 1 2 3 30 30 H 1.09008 * 109.46680 * 209.99028 * 1 2 3 31 31 H 1.08993 * 109.47518 * 329.99364 * 1 2 3 32 32 H 1.07997 * 120.44831 * 180.02562 * 4 3 2 33 33 H 1.08003 * 120.80344 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.46599 * 4.99920 * 7 6 5 35 35 H 1.08997 * 109.47474 * 245.00553 * 7 6 5 36 36 H 1.08997 * 109.47579 * 300.00704 * 8 7 6 37 37 H 1.09000 * 109.46817 * 60.00287 * 8 7 6 38 38 H 1.08999 * 113.48696 * 321.42638 * 12 11 9 39 39 H 1.08995 * 113.49253 * 91.94192 * 12 11 9 40 40 H 1.09004 * 113.48691 * 268.06253 * 14 11 9 41 41 H 1.08995 * 113.49177 * 38.57117 * 14 11 9 42 42 H 1.08995 * 109.53039 * 310.19995 * 15 13 12 43 43 H 1.08995 * 109.52502 * 70.41382 * 15 13 12 44 44 H 1.08995 * 109.59597 * 187.97923 * 16 15 13 45 45 H 1.09003 * 109.59077 * 67.54049 * 16 15 13 46 46 H 0.96991 * 119.99978 * 180.02562 * 21 20 18 47 47 H 1.09006 * 109.59191 * 184.59508 * 26 17 16 48 48 H 1.08992 * 109.59988 * 64.14717 * 26 17 16 49 49 H 1.09004 * 109.52397 * 289.74011 * 27 13 12 50 50 H 1.08995 * 109.52612 * 49.94658 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1515 0.0000 4 6 3.4710 1.1907 0.0005 5 6 4.1808 0.0001 0.0005 6 6 3.4713 -1.1903 0.0005 7 6 4.1962 -2.5115 0.0011 8 6 3.7158 -3.3563 1.1827 9 6 4.4402 -4.6777 1.1829 10 8 5.2603 -4.9198 0.3230 11 7 4.1773 -5.5902 2.1394 12 6 3.2930 -5.6688 3.3131 13 6 4.2871 -6.6509 3.9282 14 6 4.6538 -6.9422 2.4722 15 6 5.4011 -5.9832 4.7285 16 6 6.4675 -7.0295 5.0748 17 7 5.8113 -8.1804 5.7093 18 6 6.2125 -8.6141 6.9446 19 1 6.6442 -7.9171 7.6477 20 6 6.0644 -9.9495 7.2932 21 7 5.8744 -10.8565 6.3585 22 14 6.1346 -10.4594 9.0889 23 1 5.0559 -9.7704 9.8416 24 1 5.9509 -11.9293 9.1936 25 1 7.4535 -10.0840 9.6589 26 6 4.7184 -8.8591 5.0003 27 6 3.6393 -7.8261 4.6538 28 7 2.1484 -1.1511 -0.0053 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8902 0.5137 31 1 -0.3634 0.8898 0.5139 32 1 3.9905 2.1376 0.0009 33 1 5.2609 0.0001 0.0013 34 1 5.2685 -2.3375 0.0910 35 1 3.9907 -3.0392 -0.9302 36 1 3.9213 -2.8286 2.1140 37 1 2.6435 -3.5302 1.0927 38 1 3.2154 -4.7304 3.8622 39 1 2.3215 -6.1128 3.0962 40 1 4.0561 -7.7360 2.0242 41 1 5.7234 -7.0775 2.3125 42 1 5.8505 -5.1879 4.1339 43 1 4.9895 -5.5648 5.6469 44 1 7.1935 -6.5974 5.7633 45 1 6.9717 -7.3526 4.1641 46 1 5.7705 -11.7896 6.6021 47 1 4.2923 -9.6321 5.6400 48 1 5.1008 -9.3094 4.0844 49 1 3.1658 -7.4725 5.5698 50 1 2.8899 -8.2844 4.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050601584.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:33 Heat of formation + Delta-G solvation = 63.297695 kcal Electronic energy + Delta-G solvation = -29607.040521 eV Core-core repulsion = 25635.968675 eV Total energy + Delta-G solvation = -3971.071845 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.46803 -40.77288 -38.54354 -35.94991 -35.35950 -33.77405 -32.55491 -31.84080 -30.63857 -29.78273 -28.91581 -27.56242 -26.35615 -25.29571 -24.13935 -23.38813 -22.41124 -21.98768 -20.89086 -19.07665 -18.03166 -17.95454 -17.24582 -16.60026 -16.20753 -16.01176 -15.76219 -15.51368 -15.41162 -14.85700 -14.78124 -14.01063 -13.85727 -13.66568 -13.55916 -13.34194 -13.24497 -12.96019 -12.87607 -12.72443 -12.58586 -12.41805 -12.23617 -11.88242 -11.61923 -11.51404 -11.43814 -11.20599 -11.08005 -10.85373 -10.73370 -10.50516 -10.34611 -10.10603 -9.93442 -9.82111 -9.74479 -9.63972 -9.57753 -9.36428 -8.57773 -8.46888 -6.68014 -5.80807 -3.23473 0.52723 0.69171 2.65866 2.88548 3.35555 3.37053 3.43201 3.44157 3.51709 3.71206 4.03830 4.41669 4.48013 4.55298 4.66110 4.69582 4.78272 4.84966 4.99928 5.04782 5.10009 5.16578 5.22076 5.28512 5.36711 5.45793 5.48236 5.52097 5.53145 5.57668 5.64517 5.67977 5.75203 5.85138 5.93545 6.05038 6.06817 6.08120 6.24914 6.43318 6.55146 6.59523 6.63758 6.66596 6.79485 6.93792 7.30992 7.62553 7.74809 7.77820 7.84569 8.18493 8.44072 9.19791 9.83099 10.39515 11.27338 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023565 B = 0.001897 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.940717 B =14754.826985 C =14898.415126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.319 3.681 3 N -0.527 5.527 4 C 0.153 3.847 5 C -0.232 4.232 6 C 0.185 3.815 7 C -0.056 4.056 8 C -0.124 4.124 9 C 0.540 3.460 10 O -0.549 6.549 11 N -0.642 5.642 12 C 0.101 3.899 13 C -0.076 4.076 14 C 0.114 3.886 15 C -0.106 4.106 16 C 0.147 3.853 17 N -0.590 5.590 18 C -0.253 4.253 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.171 3.829 27 C -0.125 4.125 28 N -0.517 5.517 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.169 0.831 33 H 0.149 0.851 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.018 0.982 46 H 0.254 0.746 47 H 0.090 0.910 48 H 0.019 0.981 49 H 0.062 0.938 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.201 20.577 -11.848 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 N -0.242 5.242 4 C -0.013 4.013 5 C -0.254 4.254 6 C 0.039 3.961 7 C -0.094 4.094 8 C -0.164 4.164 9 C 0.330 3.670 10 O -0.427 6.427 11 N -0.377 5.377 12 C -0.022 4.022 13 C -0.077 4.077 14 C -0.008 4.008 15 C -0.145 4.145 16 C 0.020 3.980 17 N -0.313 5.313 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.045 3.955 27 C -0.164 4.164 28 N -0.232 5.232 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.186 0.814 33 H 0.167 0.833 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.108 0.892 48 H 0.037 0.963 49 H 0.081 0.919 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.708 20.424 -12.468 25.823 hybrid contribution 0.958 -0.245 0.850 1.304 sum -8.750 20.179 -11.619 24.874 Atomic orbital electron populations 1.20580 0.85647 1.04274 1.03924 1.23299 0.98238 0.83320 0.89956 1.68269 1.10232 1.30530 1.15169 1.23244 0.89668 0.98675 0.89678 1.22811 1.03150 0.94105 1.05327 1.21761 0.89575 0.95896 0.88858 1.20370 0.99389 0.89695 0.99970 1.21449 1.02129 0.93110 0.99711 1.20066 0.82640 0.84980 0.79318 1.90701 1.35516 1.79686 1.36803 1.49694 1.42902 1.17324 1.27746 1.23218 0.94929 0.99990 0.84070 1.21651 0.96006 0.96250 0.93752 1.23069 1.01281 0.83329 0.93134 1.21706 0.96349 0.98055 0.98377 1.20881 0.92692 0.88445 0.95949 1.44014 1.36006 1.32912 1.18336 1.19134 1.37914 0.91505 0.89741 0.91811 1.25041 1.01360 0.95709 0.97500 1.70020 1.53068 1.00572 1.30924 0.86383 0.78102 0.77188 0.85170 1.21042 1.21670 1.20920 1.20789 0.86424 0.92450 0.95847 1.22073 0.99218 0.96149 0.99000 1.68091 1.09585 1.30574 1.14963 0.89609 0.89484 0.89598 0.81395 0.83306 0.88793 0.88422 0.89186 0.87962 0.90832 0.89786 0.89951 0.90343 0.93073 0.91744 0.92657 0.96389 0.93563 0.89165 0.96336 0.91882 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.32 36.01 0.37 -0.19 16 2 C 0.32 3.12 7.64 -157.19 -1.20 1.92 16 3 N -0.53 -5.14 10.33 -10.72 -0.11 -5.25 16 4 C 0.15 1.17 11.31 -17.20 -0.19 0.98 16 5 C -0.23 -1.78 9.80 -39.32 -0.39 -2.17 16 6 C 0.19 1.77 6.20 -82.24 -0.51 1.26 16 7 C -0.06 -0.54 4.94 -27.89 -0.14 -0.68 16 8 C -0.12 -1.28 5.40 -27.89 -0.15 -1.43 16 9 C 0.54 7.60 8.08 -10.98 -0.09 7.52 16 10 O -0.55 -9.62 16.76 5.56 0.09 -9.52 16 11 N -0.64 -8.91 3.46 -185.27 -0.64 -9.55 16 12 C 0.10 1.21 7.57 -8.34 -0.06 1.15 16 13 C -0.08 -1.13 0.83 -155.16 -0.13 -1.26 16 14 C 0.11 1.74 7.56 -8.20 -0.06 1.68 16 15 C -0.11 -1.72 5.25 -26.78 -0.14 -1.86 16 16 C 0.15 2.97 6.41 -3.65 -0.02 2.94 16 17 N -0.59 -14.10 2.96 -172.18 -0.51 -14.61 16 18 C -0.25 -6.73 9.56 -15.06 -0.14 -6.87 16 19 H 0.06 1.67 7.89 -52.48 -0.41 1.26 16 20 C 0.00 0.07 4.89 -17.43 -0.09 -0.02 16 21 N -0.90 -25.48 11.21 55.49 0.62 -24.86 16 22 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.17 3.80 5.27 -3.65 -0.02 3.78 16 27 C -0.12 -2.10 5.31 -26.78 -0.14 -2.24 16 28 N -0.52 -5.44 9.94 -6.99 -0.07 -5.51 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.15 0.77 8.01 -52.48 -0.42 0.35 16 34 H 0.09 0.85 7.90 -51.93 -0.41 0.44 16 35 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.02 7.99 -51.93 -0.41 0.61 16 38 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 40 H 0.08 1.19 8.06 -51.93 -0.42 0.77 16 41 H 0.08 1.34 7.53 -51.93 -0.39 0.95 16 42 H 0.05 0.78 7.95 -51.93 -0.41 0.37 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.11 7.92 -51.93 -0.41 0.70 16 45 H 0.02 0.38 7.59 -51.93 -0.39 -0.02 16 46 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.09 2.28 5.97 -51.93 -0.31 1.97 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 LS Contribution 404.46 15.07 6.10 6.10 Total: -1.00 -32.53 404.46 -10.85 -43.38 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.20 Total: -0.82 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -3.11 Total: 4.49 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.71 Total: -59.79 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.53 -10.85 -43.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050601584.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.677 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds