Wall clock time and date at job start Wed Apr 1 2020 03:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31809 * 119.11912 * 2 1 4 4 C 1.32319 * 120.81780 * 179.97438 * 3 2 1 5 5 C 1.38614 * 119.10358 * 0.02562 * 4 3 2 6 6 C 1.38581 * 118.40193 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.45278 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47110 * 124.99785 * 7 6 5 9 9 C 1.50699 * 109.47110 * 179.97438 * 8 7 6 10 10 O 1.21274 * 120.00109 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99921 * 179.97438 * 9 8 7 12 12 C 1.47168 * 135.99959 * 359.63870 * 11 9 8 13 13 C 1.52679 * 87.95841 * 206.73219 * 12 11 9 14 14 C 1.47164 * 135.99764 * 180.02562 * 11 9 8 15 15 C 1.52554 * 113.90886 * 88.15432 * 13 12 11 16 16 C 1.53352 * 109.12689 * 190.30394 * 15 13 12 17 17 N 1.46893 * 108.75267 * 307.76216 * 16 15 13 18 18 C 1.36936 * 120.46089 * 235.64432 * 17 16 15 19 19 H 1.08004 * 119.99744 * 28.44050 * 18 17 16 20 20 C 1.38807 * 120.00115 * 208.43246 * 18 17 16 21 21 N 1.31624 * 119.99945 * 17.65753 * 20 18 17 22 22 Si 1.86799 * 120.00281 * 197.65779 * 20 18 17 23 23 H 1.48496 * 109.46940 * 59.99977 * 22 20 18 24 24 H 1.48497 * 109.47187 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46996 * 300.00427 * 22 20 18 26 26 C 1.46889 * 119.07193 * 55.62369 * 17 16 15 27 27 C 1.52556 * 114.24783 * 220.75210 * 13 12 11 28 28 N 1.31780 * 119.12663 * 180.26436 * 2 1 3 29 29 H 1.09005 * 109.47245 * 89.99827 * 1 2 3 30 30 H 1.09008 * 109.46680 * 209.99028 * 1 2 3 31 31 H 1.08993 * 109.47518 * 329.99364 * 1 2 3 32 32 H 1.07997 * 120.44831 * 180.02562 * 4 3 2 33 33 H 1.08003 * 120.80344 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.46599 * 4.99920 * 7 6 5 35 35 H 1.08997 * 109.47474 * 245.00553 * 7 6 5 36 36 H 1.08997 * 109.47579 * 300.00704 * 8 7 6 37 37 H 1.09000 * 109.46817 * 60.00287 * 8 7 6 38 38 H 1.08999 * 113.48696 * 321.42638 * 12 11 9 39 39 H 1.08995 * 113.49253 * 91.94192 * 12 11 9 40 40 H 1.09004 * 113.48691 * 268.06253 * 14 11 9 41 41 H 1.08995 * 113.49177 * 38.57117 * 14 11 9 42 42 H 1.08995 * 109.53039 * 310.19995 * 15 13 12 43 43 H 1.08995 * 109.52502 * 70.41382 * 15 13 12 44 44 H 1.08995 * 109.59597 * 187.97923 * 16 15 13 45 45 H 1.09003 * 109.59077 * 67.54049 * 16 15 13 46 46 H 0.96991 * 119.99978 * 180.02562 * 21 20 18 47 47 H 1.09006 * 109.59191 * 184.59508 * 26 17 16 48 48 H 1.08992 * 109.59988 * 64.14717 * 26 17 16 49 49 H 1.09004 * 109.52397 * 289.74011 * 27 13 12 50 50 H 1.08995 * 109.52612 * 49.94658 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1515 0.0000 4 6 3.4710 1.1907 0.0005 5 6 4.1808 0.0001 0.0005 6 6 3.4713 -1.1903 0.0005 7 6 4.1962 -2.5115 0.0011 8 6 3.7158 -3.3563 1.1827 9 6 4.4402 -4.6777 1.1829 10 8 5.2603 -4.9198 0.3230 11 7 4.1773 -5.5902 2.1394 12 6 3.2930 -5.6688 3.3131 13 6 4.2871 -6.6509 3.9282 14 6 4.6538 -6.9422 2.4722 15 6 5.4011 -5.9832 4.7285 16 6 6.4675 -7.0295 5.0748 17 7 5.8113 -8.1804 5.7093 18 6 6.2125 -8.6141 6.9446 19 1 6.6442 -7.9171 7.6477 20 6 6.0644 -9.9495 7.2932 21 7 5.8744 -10.8565 6.3585 22 14 6.1346 -10.4594 9.0889 23 1 5.0559 -9.7704 9.8416 24 1 5.9509 -11.9293 9.1936 25 1 7.4535 -10.0840 9.6589 26 6 4.7184 -8.8591 5.0003 27 6 3.6393 -7.8261 4.6538 28 7 2.1484 -1.1511 -0.0053 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8902 0.5137 31 1 -0.3634 0.8898 0.5139 32 1 3.9905 2.1376 0.0009 33 1 5.2609 0.0001 0.0013 34 1 5.2685 -2.3375 0.0910 35 1 3.9907 -3.0392 -0.9302 36 1 3.9213 -2.8286 2.1140 37 1 2.6435 -3.5302 1.0927 38 1 3.2154 -4.7304 3.8622 39 1 2.3215 -6.1128 3.0962 40 1 4.0561 -7.7360 2.0242 41 1 5.7234 -7.0775 2.3125 42 1 5.8505 -5.1879 4.1339 43 1 4.9895 -5.5648 5.6469 44 1 7.1935 -6.5974 5.7633 45 1 6.9717 -7.3526 4.1641 46 1 5.7705 -11.7896 6.6021 47 1 4.2923 -9.6321 5.6400 48 1 5.1008 -9.3094 4.0844 49 1 3.1658 -7.4725 5.5698 50 1 2.8899 -8.2844 4.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050601584.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:32 Heat of formation + Delta-G solvation = 44.471393 kcal Electronic energy + Delta-G solvation = -29607.856891 eV Core-core repulsion = 25635.968675 eV Total energy + Delta-G solvation = -3971.888215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.13737 -41.91186 -39.73895 -37.56510 -36.10799 -34.36050 -34.26823 -32.77273 -32.09985 -31.37482 -29.51176 -28.83588 -27.50110 -26.32158 -25.70376 -24.08264 -23.92077 -22.81072 -22.40148 -20.26027 -19.46631 -18.60295 -18.41924 -18.02143 -17.11630 -16.97061 -16.81916 -16.72898 -16.18825 -16.07290 -15.79095 -15.64399 -15.29151 -14.94385 -14.67025 -14.49158 -14.17560 -14.03346 -13.84771 -13.69365 -13.54182 -13.29890 -13.20832 -13.08568 -13.04871 -12.89843 -12.78081 -12.52481 -12.33217 -12.27899 -12.02444 -11.81817 -11.79502 -11.55933 -11.36185 -11.26663 -11.15198 -10.75640 -10.46865 -10.33995 -10.22662 -9.71075 -8.62912 -7.84260 -5.29782 -0.08693 0.07612 1.49356 1.50895 1.57880 1.58306 1.83494 2.53858 2.72544 2.90398 3.14058 3.24919 3.33087 3.43126 3.63704 3.72335 3.84022 3.94665 4.04060 4.08596 4.12234 4.21765 4.27820 4.43096 4.48412 4.50699 4.52665 4.61189 4.62832 4.63458 4.72252 4.73608 4.79506 4.82938 4.84728 4.93886 4.96363 5.04554 5.06967 5.08957 5.15154 5.21358 5.37025 5.38400 5.49657 5.56326 5.68449 5.82959 6.05672 6.43102 6.77272 7.08710 7.12050 7.19016 7.90503 8.41343 9.21070 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023565 B = 0.001897 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.940717 B =14754.826985 C =14898.415126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.302 3.698 3 N -0.545 5.545 4 C 0.149 3.851 5 C -0.229 4.229 6 C 0.170 3.830 7 C -0.050 4.050 8 C -0.109 4.109 9 C 0.536 3.464 10 O -0.590 6.590 11 N -0.643 5.643 12 C 0.118 3.882 13 C -0.078 4.078 14 C 0.109 3.891 15 C -0.091 4.091 16 C 0.143 3.857 17 N -0.607 5.607 18 C -0.261 4.261 19 H 0.064 0.936 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.279 1.279 26 C 0.175 3.825 27 C -0.108 4.108 28 N -0.536 5.536 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.201 0.799 33 H 0.174 0.826 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.004 0.996 46 H 0.249 0.751 47 H 0.056 0.944 48 H -0.006 1.006 49 H 0.066 0.934 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.619 23.223 -11.455 27.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.035 3.965 3 N -0.261 5.261 4 C -0.016 4.016 5 C -0.250 4.250 6 C 0.025 3.975 7 C -0.088 4.088 8 C -0.149 4.149 9 C 0.328 3.672 10 O -0.471 6.471 11 N -0.376 5.376 12 C -0.003 4.003 13 C -0.079 4.079 14 C -0.014 4.014 15 C -0.130 4.130 16 C 0.018 3.982 17 N -0.331 5.331 18 C -0.392 4.392 19 H 0.082 0.918 20 C -0.246 4.246 21 N -0.580 5.580 22 Si 0.793 3.207 23 H -0.202 1.202 24 H -0.222 1.222 25 H -0.205 1.205 26 C 0.049 3.951 27 C -0.148 4.148 28 N -0.252 5.252 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.217 0.783 33 H 0.191 0.809 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.022 0.978 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.012 0.988 49 H 0.084 0.916 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.144 23.104 -12.066 28.348 hybrid contribution 1.504 -1.061 0.671 1.959 sum -9.640 22.043 -11.396 26.622 Atomic orbital electron populations 1.20653 0.84078 1.04854 1.04613 1.23802 0.99436 0.83250 0.90013 1.68332 1.11354 1.30619 1.15775 1.23835 0.89228 1.00069 0.88463 1.23085 1.04396 0.93394 1.04149 1.21807 0.89642 0.96301 0.89768 1.20275 0.99693 0.89751 0.99099 1.21392 1.01844 0.90948 1.00762 1.20740 0.82094 0.85860 0.78475 1.90684 1.37441 1.80570 1.38445 1.49755 1.43069 1.16540 1.28285 1.23209 0.94471 1.00181 0.82464 1.21535 0.96784 0.96620 0.92974 1.23036 0.99932 0.84769 0.93691 1.21502 0.95470 0.96867 0.99125 1.20986 0.93949 0.88410 0.94900 1.44285 1.36984 1.33748 1.18070 1.19456 1.37139 0.91649 0.90907 0.91784 1.25772 1.01893 0.95799 1.01110 1.70180 1.54696 1.00462 1.32623 0.85380 0.78247 0.76289 0.80750 1.20163 1.22244 1.20467 1.20628 0.87403 0.93308 0.93739 1.21833 0.97738 0.95271 0.99936 1.68082 1.10158 1.31129 1.15796 0.88798 0.89044 0.88819 0.78251 0.80879 0.88365 0.89784 0.87505 0.87168 0.88267 0.87282 0.89209 0.93062 0.91719 0.90993 0.93069 0.97836 0.94157 0.92588 0.98774 0.91551 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.32 71.24 0.74 -0.25 16 2 C 0.30 5.44 7.64 138.75 1.06 6.50 16 3 N -0.55 -9.65 10.33 -187.84 -1.94 -11.59 16 4 C 0.15 1.92 11.31 84.71 0.96 2.88 16 5 C -0.23 -2.96 9.80 22.44 0.22 -2.74 16 6 C 0.17 2.94 6.20 42.56 0.26 3.20 16 7 C -0.05 -0.88 4.94 29.85 0.15 -0.74 16 8 C -0.11 -2.00 5.40 29.85 0.16 -1.84 16 9 C 0.54 14.21 8.08 87.66 0.71 14.92 16 10 O -0.59 -20.49 16.76 -3.01 -0.05 -20.54 16 11 N -0.64 -16.38 3.46 -858.45 -2.97 -19.35 16 12 C 0.12 2.37 7.57 83.23 0.63 3.00 16 13 C -0.08 -2.18 0.83 -52.60 -0.04 -2.23 16 14 C 0.11 3.22 7.56 83.32 0.63 3.85 16 15 C -0.09 -2.80 5.25 30.56 0.16 -2.64 16 16 C 0.14 5.83 6.41 86.42 0.55 6.38 16 17 N -0.61 -29.51 2.96 -698.66 -2.07 -31.58 16 18 C -0.26 -14.06 9.56 84.03 0.80 -13.26 16 19 H 0.06 3.37 7.89 -2.91 -0.02 3.35 16 20 C -0.05 -2.76 4.89 84.86 0.42 -2.35 16 21 N -0.93 -54.47 11.21 21.65 0.24 -54.23 16 22 Si 0.97 44.13 29.59 68.60 2.03 46.16 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 C 0.17 7.94 5.27 86.42 0.46 8.39 16 27 C -0.11 -3.48 5.31 30.57 0.16 -3.32 16 28 N -0.54 -10.44 9.94 -176.02 -1.75 -12.19 16 29 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.20 1.07 8.06 -2.91 -0.02 1.04 16 33 H 0.17 1.26 8.01 -2.91 -0.02 1.24 16 34 H 0.10 1.63 7.90 -2.39 -0.02 1.61 16 35 H 0.08 1.71 8.10 -2.39 -0.02 1.69 16 36 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.11 1.89 7.99 -2.39 -0.02 1.87 16 38 H 0.10 1.58 8.10 -2.39 -0.02 1.56 16 39 H 0.11 1.75 8.09 -2.39 -0.02 1.73 16 40 H 0.09 2.52 8.06 -2.38 -0.02 2.50 16 41 H 0.05 1.79 7.53 -2.39 -0.02 1.77 16 42 H 0.06 1.84 7.95 -2.39 -0.02 1.82 16 43 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.05 2.07 7.92 -2.39 -0.02 2.05 16 45 H 0.00 0.16 7.59 -2.39 -0.02 0.14 16 46 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 47 H 0.06 2.92 5.97 -2.38 -0.01 2.91 16 48 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 49 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 Total: -1.00 -73.04 404.46 2.43 -70.60 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.92 Total: 12.93 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 8.02 Total: 19.78 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -8.49 Total: -128.94 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.05 Total: -20.54 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -73.04 2.43 -70.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050601584.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.076 kcal (2) G-P(sol) polarization free energy of solvation -73.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds