Wall clock time and date at job start Wed Apr 1 2020 03:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46714 * 2 1 4 4 C 1.38550 * 120.00989 * 125.00122 * 3 2 1 5 5 C 1.40075 * 117.81237 * 180.02562 * 4 3 2 6 6 C 1.48144 * 121.14130 * 179.97438 * 5 4 3 7 7 O 1.21519 * 119.99796 * 214.33934 * 6 5 4 8 8 N 1.34775 * 120.00186 * 34.33779 * 6 5 4 9 9 C 1.47663 * 134.45759 * 184.66552 * 8 6 5 10 10 C 1.53509 * 85.98025 * 204.34133 * 9 8 6 11 11 C 1.47670 * 134.45728 * 4.70771 * 8 6 5 12 12 C 1.52673 * 113.56978 * 91.01858 * 10 9 8 13 13 C 1.53337 * 109.11232 * 73.81858 * 12 10 9 14 14 N 1.46873 * 108.76314 * 52.40253 * 13 12 10 15 15 C 1.36939 * 120.46553 * 124.47881 * 14 13 12 16 16 H 1.08002 * 119.99461 * 326.89990 * 15 14 13 17 17 C 1.38812 * 120.00030 * 147.17957 * 15 14 13 18 18 N 1.31620 * 120.00087 * 345.43445 * 17 15 14 19 19 Si 1.86807 * 119.99647 * 165.43674 * 17 15 14 20 20 H 1.48495 * 109.47276 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46690 * 120.00122 * 19 17 15 22 22 H 1.48500 * 109.46998 * 239.99601 * 19 17 15 23 23 C 1.46885 * 119.07099 * 304.74347 * 14 13 12 24 24 C 1.52672 * 113.56796 * 222.23698 * 10 9 8 25 25 C 1.39757 * 117.71124 * 0.25659 * 5 4 3 26 26 C 1.50700 * 120.17295 * 179.72717 * 25 5 4 27 27 N 1.31902 * 119.65553 * 359.47911 * 25 5 4 28 28 N 1.28275 * 122.32503 * 0.54396 * 27 25 5 29 29 H 1.09004 * 109.47382 * 60.00154 * 1 2 3 30 30 H 1.09004 * 109.47457 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47224 * 299.99833 * 1 2 3 32 32 H 1.08996 * 109.46818 * 240.00205 * 2 1 3 33 33 H 1.08997 * 109.46789 * 120.00147 * 2 1 3 34 34 H 1.07999 * 121.09003 * 0.04299 * 4 3 2 35 35 H 1.08995 * 113.78655 * 90.07799 * 9 8 6 36 36 H 1.09003 * 113.89931 * 318.62099 * 9 8 6 37 37 H 1.09002 * 113.78803 * 41.38353 * 11 8 6 38 38 H 1.09005 * 113.78737 * 269.92680 * 11 8 6 39 39 H 1.09002 * 109.53336 * 313.92259 * 12 10 9 40 40 H 1.09004 * 109.58956 * 193.73875 * 12 10 9 41 41 H 1.09003 * 109.58686 * 292.61408 * 13 12 10 42 42 H 1.09003 * 109.58351 * 172.19058 * 13 12 10 43 43 H 0.97002 * 119.99416 * 180.02562 * 18 17 15 44 44 H 1.08997 * 109.59344 * 175.04499 * 23 14 13 45 45 H 1.09000 * 109.58658 * 295.47902 * 23 14 13 46 46 H 1.09000 * 109.52569 * 46.07169 * 24 10 9 47 47 H 1.08999 * 109.53290 * 166.22413 * 24 10 9 48 48 H 1.08999 * 109.47207 * 84.18405 * 26 25 5 49 49 H 1.09004 * 109.47205 * 204.17666 * 26 25 5 50 50 H 1.08998 * 109.47034 * 324.17944 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9120 1.8449 0.9828 5 6 3.3490 3.1750 0.9391 6 6 4.2892 3.7062 1.9532 7 8 4.1997 4.8617 2.3185 8 7 5.2438 2.9079 2.4708 9 6 6.2628 3.0657 3.5278 10 6 7.0395 1.9641 2.7931 11 6 5.6904 1.5252 2.2076 12 6 8.0152 2.4986 1.7476 13 6 9.2262 3.1139 2.4591 14 7 9.7675 2.1305 3.4063 15 6 11.0822 1.7532 3.3398 16 1 11.5834 1.7085 2.3842 17 6 11.7689 1.4225 4.5000 18 7 11.2666 1.7386 5.6748 19 14 13.4059 0.5289 4.3938 20 1 13.7486 0.2912 2.9686 21 1 14.4640 1.3577 5.0252 22 1 13.3068 -0.7718 5.1033 23 6 8.8775 1.5531 4.4222 24 6 7.6658 0.9318 3.7275 25 6 2.8629 3.9853 -0.0906 26 6 3.2918 5.4268 -0.1868 27 7 2.0305 3.4805 -0.9806 28 7 1.6341 2.2614 -0.9351 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2499 1.1718 1.7569 35 1 5.9168 2.7732 4.5192 36 1 6.7610 4.0352 3.5197 37 1 5.7326 1.2708 1.1485 38 1 5.1742 0.7749 2.8067 39 1 7.5215 3.2602 1.1440 40 1 8.3460 1.6824 1.1053 41 1 8.9171 4.0093 2.9985 42 1 9.9890 3.3724 1.7247 43 1 11.7467 1.5078 6.4855 44 1 9.4107 0.7838 4.9806 45 1 8.5432 2.3362 5.1027 46 1 6.9336 0.6248 4.4744 47 1 7.9839 0.0636 3.1505 48 1 4.2439 5.4882 -0.7137 49 1 2.5377 5.9946 -0.7319 50 1 3.4038 5.8401 0.8155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050602960.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:12 Heat of formation + Delta-G solvation = 71.898091 kcal Electronic energy + Delta-G solvation = -30667.839794 eV Core-core repulsion = 26697.140890 eV Total energy + Delta-G solvation = -3970.698904 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.70157 -40.64719 -38.53695 -36.04091 -35.49573 -33.86965 -32.63634 -31.88640 -30.70271 -29.90788 -28.28954 -27.34883 -26.57624 -25.63484 -24.23767 -23.66314 -22.65488 -22.39131 -21.00839 -19.64049 -18.21338 -17.94521 -17.40895 -16.56883 -16.26283 -15.97973 -15.76409 -15.47897 -15.03550 -14.90139 -14.46134 -14.14379 -13.98083 -13.78888 -13.69302 -13.45735 -13.27952 -13.13704 -12.81532 -12.67206 -12.47700 -12.26742 -12.18157 -12.02918 -11.82347 -11.60438 -11.51059 -11.16755 -11.07128 -10.82165 -10.65407 -10.54134 -10.50176 -10.33298 -10.23627 -9.97722 -9.79573 -9.74053 -9.72569 -9.41801 -8.78905 -8.54277 -6.67361 -5.86713 -3.34633 0.09767 0.52839 2.45609 2.53713 3.22327 3.31367 3.40125 3.41790 3.58407 3.82221 4.04134 4.13185 4.35499 4.41918 4.44552 4.62747 4.76772 4.85476 4.90126 5.02989 5.15177 5.18205 5.21465 5.24817 5.33225 5.35626 5.43458 5.45516 5.47347 5.52559 5.56749 5.62339 5.73158 5.76363 5.82008 5.92304 5.94287 5.95746 6.09520 6.16360 6.33141 6.45860 6.48427 6.55243 6.72654 6.87325 7.21343 7.50203 7.53421 7.74465 7.85500 8.38496 8.41425 9.15015 9.76375 10.35001 11.21581 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.002489 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.862243 B =11246.740322 C =11934.877025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C 0.060 3.940 4 C -0.080 4.080 5 C -0.119 4.119 6 C 0.582 3.418 7 O -0.524 6.524 8 N -0.629 5.629 9 C 0.120 3.880 10 C -0.071 4.071 11 C 0.095 3.905 12 C -0.109 4.109 13 C 0.147 3.853 14 N -0.589 5.589 15 C -0.257 4.257 16 H 0.063 0.937 17 C 0.008 3.992 18 N -0.900 5.900 19 Si 0.901 3.099 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.174 3.826 24 C -0.127 4.127 25 C 0.115 3.885 26 C -0.121 4.121 27 N -0.242 5.242 28 N -0.224 5.224 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.019 0.981 42 H 0.056 0.944 43 H 0.254 0.746 44 H 0.084 0.916 45 H 0.020 0.980 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.377 -3.246 -8.285 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.085 4.085 4 C -0.110 4.110 5 C -0.133 4.133 6 C 0.370 3.630 7 O -0.402 6.402 8 N -0.363 5.363 9 C -0.001 4.001 10 C -0.072 4.072 11 C -0.027 4.027 12 C -0.148 4.148 13 C 0.020 3.980 14 N -0.312 5.312 15 C -0.386 4.386 16 H 0.081 0.919 17 C -0.192 4.192 18 N -0.544 5.544 19 Si 0.731 3.269 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.215 1.215 23 C 0.048 3.952 24 C -0.167 4.167 25 C -0.030 4.030 26 C -0.179 4.179 27 N -0.083 5.083 28 N -0.066 5.066 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.171 0.829 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.038 0.962 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.102 0.898 49 H 0.100 0.900 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -19.395 -2.247 -9.363 21.654 hybrid contribution 1.617 -0.843 1.361 2.275 sum -17.778 -3.089 -8.002 19.739 Atomic orbital electron populations 1.21715 0.93605 1.02263 1.02868 1.20464 0.97393 0.88844 1.03953 1.22855 0.94647 0.98756 0.92219 1.22592 0.95074 0.94753 0.98533 1.21085 0.99760 0.94764 0.97696 1.17518 0.79192 0.85174 0.81148 1.90724 1.71230 1.16463 1.61774 1.50043 1.32903 1.15319 1.37990 1.23388 0.84669 1.01031 0.90986 1.21977 0.92612 0.95865 0.96776 1.23645 0.94014 0.83413 1.01628 1.21788 0.96738 1.00046 0.96259 1.20892 0.93057 0.91350 0.92658 1.43946 1.06849 1.44911 1.35468 1.19170 0.86862 1.40589 0.92012 0.91935 1.25171 0.97687 1.00626 0.95681 1.70014 1.39417 1.48070 0.96867 0.86253 0.83749 0.79308 0.77628 1.20204 1.21640 1.21519 1.20617 0.87858 0.96810 0.89949 1.22079 0.99665 0.97301 0.97665 1.23081 0.91732 0.98589 0.89559 1.21089 1.02107 0.88319 1.06402 1.73072 1.09079 1.05416 1.20780 1.72734 1.17187 0.97522 1.19183 0.91351 0.91746 0.92804 0.89174 0.89774 0.82880 0.89329 0.89415 0.90207 0.89395 0.93022 0.91672 0.96310 0.92541 0.93612 0.89763 0.96225 0.92738 0.91827 0.89803 0.89971 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.77 37.16 0.36 -0.59 16 2 C -0.07 -0.45 6.35 -27.88 -0.18 -0.63 16 3 C 0.06 0.60 6.25 -82.45 -0.52 0.08 16 4 C -0.08 -0.80 8.73 -38.78 -0.34 -1.13 16 5 C -0.12 -1.46 5.76 -104.57 -0.60 -2.06 16 6 C 0.58 8.09 7.52 -12.19 -0.09 8.00 16 7 O -0.52 -8.69 14.92 5.35 0.08 -8.61 16 8 N -0.63 -8.01 3.42 -181.23 -0.62 -8.63 16 9 C 0.12 1.66 7.63 -3.15 -0.02 1.64 16 10 C -0.07 -0.98 0.77 -154.43 -0.12 -1.10 16 11 C 0.10 1.02 5.89 -3.16 -0.02 1.00 16 12 C -0.11 -1.69 5.22 -26.72 -0.14 -1.83 16 13 C 0.15 2.86 6.38 -3.66 -0.02 2.83 16 14 N -0.59 -13.60 2.94 -172.50 -0.51 -14.11 16 15 C -0.26 -6.66 9.52 -15.06 -0.14 -6.81 16 16 H 0.06 1.62 7.87 -52.49 -0.41 1.21 16 17 C 0.01 0.20 4.93 -17.43 -0.09 0.12 16 18 N -0.90 -24.96 11.38 55.49 0.63 -24.32 16 19 Si 0.90 20.81 29.58 -169.99 -5.03 15.79 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.17 3.68 5.16 -3.90 -0.02 3.66 16 24 C -0.13 -1.98 5.24 -26.97 -0.14 -2.12 16 25 C 0.12 1.47 6.90 -81.99 -0.57 0.91 16 26 C -0.12 -1.37 9.63 36.01 0.35 -1.02 16 27 N -0.24 -3.28 11.42 33.81 0.39 -2.89 16 28 N -0.22 -2.82 11.04 33.58 0.37 -2.45 16 29 H 0.07 0.53 7.96 -51.93 -0.41 0.11 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.40 7.92 -51.93 -0.41 -0.02 16 34 H 0.15 1.14 6.55 -52.49 -0.34 0.80 16 35 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 36 H 0.09 1.36 7.41 -51.93 -0.38 0.97 16 37 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 38 H 0.09 0.74 7.85 -51.93 -0.41 0.33 16 39 H 0.05 0.76 8.01 -51.93 -0.42 0.34 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.38 7.49 -51.93 -0.39 -0.01 16 42 H 0.06 1.11 7.92 -51.93 -0.41 0.69 16 43 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.08 2.05 6.25 -51.93 -0.32 1.72 16 45 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 46 H 0.05 0.73 8.12 -51.93 -0.42 0.30 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.11 1.42 5.44 -51.93 -0.28 1.14 16 LS Contribution 396.01 15.07 5.97 5.97 Total: -1.00 -30.74 396.01 -8.99 -39.72 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.97 Total: -1.39 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.30 Total: 0.93 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.26 Total: -52.40 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.08 Total: -8.61 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.74 -8.99 -39.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050602960.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.622 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds